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{{CL
{{CL
|id=CL:0002681
|alt_id=
|name=kidney cortical cell
|namespace=cell
|def=
|xref=
|is_a=CL:1000497
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=terryh
|created_by=terryh
|obo_creation_date=2011-10-25T03:49:41Z
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002681
|is_a=CL:1000497
|is_obsolete=
|located_in=
|located_in=
|name=kidney cortical cell
|namespace=FANTOM
|obo_creation_date=2011-10-25T03:49:41Z
|part_of=UBERON:0001225
|part_of=UBERON:0001225
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Latest revision as of 16:46, 12 September 2014

Name:kidney cortical cell
Namespace:FANTOM
Created by:terryh
Creation date:2011-10-25T03:49:41Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:1000497(kidney cell)
part_of:UBERON:0001225(cortex of kidney)



Children


is a:CL:0002584 (renal cortical epithelial cell),CL:1000618 (juxtaglomerular complex cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002681 (kidney cortical cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.8e-58FFCP PHASE2:Hg19::chr2:693380..693398,+#_be5c7f0d2b230cee508970350e6b7da8p@chr2:693380..693398, +
4.8e-58FFCP PHASE1:Hg19::chr2:693380..693398,+#_be5c7f0d2b230cee508970350e6b7da8p@chr2:693380..693398, +
4.05e-52FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_53aca6883dfb74b9d0869f44ab5f5b69p7@HOXA10
4.05e-52FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_53aca6883dfb74b9d0869f44ab5f5b69p7@HOXA10
1.06e-50FFCP PHASE2:Hg19::chr5:74244100..74244117,+#_74b37f2dfe62e458ab48f9e26752c3b1p@chr5:74244100..74244117, +
1.06e-50FFCP PHASE1:Hg19::chr5:74244100..74244117,+#_74b37f2dfe62e458ab48f9e26752c3b1p@chr5:74244100..74244117, +
5.59e-50FFCP PHASE2:Hg19::chr1:20465872..20465881,+#_339d185baf8a9a278517569b84217e44p2@PLA2G2F
5.59e-50FFCP PHASE1:Hg19::chr1:20465872..20465881,+#_339d185baf8a9a278517569b84217e44p2@PLA2G2F
6.11e-42FFCP PHASE2:Hg19::chr16:86768403..86768437,+#_be6d3ac9e0a39ff71a9d420269a2f59fp@chr16:86768403..86768437, +
6.11e-42FFCP PHASE1:Hg19::chr16:86768403..86768437,+#_be6d3ac9e0a39ff71a9d420269a2f59fp@chr16:86768403..86768437, +
3.58e-41FFCP PHASE1:Hg19::chr15:66420804..66420837,-#_118d654b8cedd8865499fa509a9f8652p4@MEGF11
3.58e-41FFCP PHASE2:Hg19::chr15:66420804..66420837,-#_118d654b8cedd8865499fa509a9f8652p4@MEGF11
1.0e-40FFCP PHASE2:Hg19::chr1:94713418..94713436,+#_85e67dd00bea930892ccb588bf82d699p1@ENST00000413103
1.0e-40FFCP PHASE1:Hg19::chr1:94713418..94713436,+#_85e67dd00bea930892ccb588bf82d699p1@ENST00000413103
6.83e-40FFCP PHASE2:Hg19::chr7:140227303..140227330,-#_cc671f0aab62e14e0f3175c10b38ccf3p@chr7:140227303..140227330, -
6.83e-40FFCP PHASE1:Hg19::chr7:140227303..140227330,-#_cc671f0aab62e14e0f3175c10b38ccf3p@chr7:140227303..140227330, -
9.22e-40FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_80955c5ae69e349d142505541db48179p3@PAX2
9.22e-40FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_80955c5ae69e349d142505541db48179p3@PAX2
1.79e-39FFCP PHASE2:Hg19::chr18:3456189..3456200,+#_5688483b86100329624263f4dd34d46bp@chr18:3456189..3456200, +
1.79e-39FFCP PHASE1:Hg19::chr18:3456189..3456200,+#_5688483b86100329624263f4dd34d46bp@chr18:3456189..3456200, +
4.5e-38FFCP PHASE1:Hg19::chr6:30890456..30890482,+#_6a34be03897d247f38b7066393d0643bp11@VARS2
4.5e-38FFCP PHASE2:Hg19::chr6:30890456..30890482,+#_6a34be03897d247f38b7066393d0643bp11@VARS2
8.61e-38FFCP PHASE2:Hg19::chr2:120409486..120409492,+#_6293049d85c0e496c3d207e51f577e05p@chr2:120409486..120409492, +
8.61e-38FFCP PHASE1:Hg19::chr2:120409486..120409492,+#_6293049d85c0e496c3d207e51f577e05p@chr2:120409486..120409492, +
5.07e-37FFCP PHASE1:Hg19::chr20:6033532..6033548,-#_d5c659695dceacf5d701189225fdd88dp2@AB527789
5.07e-37FFCP PHASE2:Hg19::chr20:6033532..6033548,-#_d5c659695dceacf5d701189225fdd88dp2@AB527789
6.37e-37FFCP PHASE2:Hg19::chr1:1100457..1100470,+#_77d569951a1f9825d68722bf353193d4p@chr1:1100457..1100470, +
6.37e-37FFCP PHASE1:Hg19::chr1:1100457..1100470,+#_77d569951a1f9825d68722bf353193d4p@chr1:1100457..1100470, +
1.63e-36FFCP PHASE2:Hg19::chr20:6034607..6034616,-#_94c9928b9d586607911eec00a419d02bp6@LRRN4
1.63e-36FFCP PHASE1:Hg19::chr20:6034607..6034616,-#_94c9928b9d586607911eec00a419d02bp6@LRRN4
2.81e-35FFCP PHASE2:Hg19::chr17:36104873..36104903,-#_21dd759b8822655efb65b39cdbfbf258p3@HNF1B
2.81e-35FFCP PHASE1:Hg19::chr17:36104873..36104903,-#_21dd759b8822655efb65b39cdbfbf258p3@HNF1B
4.37e-35FFCP PHASE2:Hg19::chr9:133986782..133986794,+#_4f84e703fba8d5ecda60292ed4d2b737p4@AIF1L
4.37e-35FFCP PHASE1:Hg19::chr9:133986782..133986794,+#_4f84e703fba8d5ecda60292ed4d2b737p4@AIF1L
1.19e-34FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_5b6bd808d957730d22ce4ff983c6baaap4@PAX2
1.19e-34FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_5b6bd808d957730d22ce4ff983c6baaap4@PAX2
5.98e-34FFCP PHASE2:Hg19::chr5:167718782..167718785,+#_3acf62c15b953bc22bb229851fc3df05p10@WWC1
5.98e-34FFCP PHASE1:Hg19::chr5:167718782..167718785,+#_3acf62c15b953bc22bb229851fc3df05p10@WWC1
2.93e-33FFCP PHASE1:Hg19::chr20:6034672..6034714,-#_5e99fb3a252f1606f60a7c495d4be6d3p2@LRRN4
2.93e-33FFCP PHASE2:Hg19::chr20:6034672..6034714,-#_5e99fb3a252f1606f60a7c495d4be6d3p2@LRRN4
1.44e-32FFCP PHASE2:Hg19::chr16:3068288..3068312,-#_a1677dae13f1daf5dcdc6fdab5bc876cp2@CLDN6
1.44e-32FFCP PHASE1:Hg19::chr16:3068288..3068312,-#_a1677dae13f1daf5dcdc6fdab5bc876cp2@CLDN6
1.85e-32FFCP PHASE2:Hg19::chr20:6034828..6034857,-#_3850bd90e5afb3c608c5295fb20f164cp5@LRRN4
1.85e-32FFCP PHASE1:Hg19::chr20:6034828..6034857,-#_3850bd90e5afb3c608c5295fb20f164cp5@LRRN4
4.69e-32FFCP PHASE2:Hg19::chr7:140227349..140227360,-#_8e2b286225d8ed77d600ef7ab3cffebbp@chr7:140227349..140227360, -
4.69e-32FFCP PHASE1:Hg19::chr7:140227349..140227360,-#_8e2b286225d8ed77d600ef7ab3cffebbp@chr7:140227349..140227360, -
1.23e-31FFCP PHASE2:Hg19::chr17:27970385..27970397,-#_67c455c7cced73ccbf14f8b7244ac5aap@chr17:27970385..27970397, -
1.23e-31FFCP PHASE1:Hg19::chr17:27970385..27970397,-#_67c455c7cced73ccbf14f8b7244ac5aap@chr17:27970385..27970397, -
2.99e-30FFCP PHASE1:Hg19::chr15:85403302..85403304,+#_3e47810af720bbfb0a8e4aa2dd354b02p@chr15:85403302..85403304, +
2.99e-30FFCP PHASE2:Hg19::chr15:85403302..85403304,+#_3e47810af720bbfb0a8e4aa2dd354b02p@chr15:85403302..85403304, +
3.02e-30FFCP PHASE2:Hg19::chr21:41029235..41029269,+#_25b2cf3372bea6057729bba7e23f7cb5p2@B3GALT5
3.02e-30FFCP PHASE1:Hg19::chr21:41029235..41029269,+#_25b2cf3372bea6057729bba7e23f7cb5p2@B3GALT5
1.06e-29FFCP PHASE2:Hg19::chr19:50390837..50390847,+#_e81e99d179045c0af2ed600a241dbcd5p@chr19:50390837..50390847, +
1.06e-29FFCP PHASE1:Hg19::chr19:50390837..50390847,+#_e81e99d179045c0af2ed600a241dbcd5p@chr19:50390837..50390847, +
1.26e-29FFCP PHASE2:Hg19::chr20:6034576..6034592,-#_7422b40bfd908d4d2e5dd7673a7bb411p3@LRRN4
1.26e-29FFCP PHASE1:Hg19::chr20:6034576..6034592,-#_7422b40bfd908d4d2e5dd7673a7bb411p3@LRRN4
1.54e-29FFCP PHASE2:Hg19::chr17:171147..171161,+#_aee733494d5a0258750c1cff57172b94p@chr17:171147..171161, +
1.54e-29FFCP PHASE1:Hg19::chr17:171147..171161,+#_aee733494d5a0258750c1cff57172b94p@chr17:171147..171161, +
3.11e-29FFCP PHASE1:Hg19::chr21:46826248..46826282,-#_c7d54908387f44a1be5d7b6ac7f3baa3p@chr21:46826248..46826282, -
3.11e-29FFCP PHASE2:Hg19::chr21:46826248..46826282,-#_c7d54908387f44a1be5d7b6ac7f3baa3p@chr21:46826248..46826282, -
4.34e-29FFCP PHASE2:Hg19::chr1:81001398..81001426,+#_7454260a86fdb57d9d4ba78626b124d6p1@ENST00000418041, p1@ENST00000443104
4.34e-29FFCP PHASE1:Hg19::chr1:81001398..81001426,+#_7454260a86fdb57d9d4ba78626b124d6p1@ENST00000418041, p1@ENST00000443104
1.58e-28FFCP PHASE1:Hg19::chr9:133986807..133986821,+#_4926faaac55f2ac67fcd2174091040f5p3@AIF1L
1.58e-28FFCP PHASE2:Hg19::chr9:133986807..133986821,+#_4926faaac55f2ac67fcd2174091040f5p3@AIF1L
2.94e-28FFCP PHASE1:Hg19::chr7:7606139..7606151,-#_70cfade61b2b7c8e677d22dd01c63970p@chr7:7606139..7606151, -
2.94e-28FFCP PHASE2:Hg19::chr7:7606139..7606151,-#_70cfade61b2b7c8e677d22dd01c63970p@chr7:7606139..7606151, -
6.08e-28FFCP PHASE1:Hg19::chr10:91043420..91043437,+#_de858ffeca668dd9d0c0d6c9bb1313c6p1@ENST00000444849
6.08e-28FFCP PHASE2:Hg19::chr10:91043420..91043437,+#_de858ffeca668dd9d0c0d6c9bb1313c6p1@ENST00000444849
1.11e-27FFCP PHASE1:Hg19::chr10:102505493..102505546,+#_9e221a3386fe2d2b809549f0d77bd52cp2@PAX2
1.11e-27FFCP PHASE2:Hg19::chr10:102505493..102505546,+#_9e221a3386fe2d2b809549f0d77bd52cp2@PAX2
2.09e-27FFCP PHASE1:Hg19::chr9:71735910..71735923,+#_29f449e29d99570a3dd101c05123add0p16@TJP2
2.09e-27FFCP PHASE2:Hg19::chr9:71735910..71735923,+#_29f449e29d99570a3dd101c05123add0p16@TJP2
2.35e-27FFCP PHASE1:Hg19::chr16:86604624..86604648,+#_d3880d5b350874b383bd71a7253ccde6p@chr16:86604624..86604648, +
2.35e-27FFCP PHASE2:Hg19::chr16:86604624..86604648,+#_d3880d5b350874b383bd71a7253ccde6p@chr16:86604624..86604648, +
3.45e-27FFCP PHASE2:Hg19::chr20:6034598..6034603,-#_4456118844137abfdb3b78a4e26975f9p7@LRRN4
3.45e-27FFCP PHASE1:Hg19::chr20:6034598..6034603,-#_4456118844137abfdb3b78a4e26975f9p7@LRRN4
7.25e-27FFCP PHASE2:Hg19::chr17:171082..171101,+#_59db684392678092d125e5fd5ade5159p@chr17:171082..171101, +
7.25e-27FFCP PHASE1:Hg19::chr17:171082..171101,+#_59db684392678092d125e5fd5ade5159p@chr17:171082..171101, +
4.96e-26FFCP PHASE2:Hg19::chr20:6033140..6033181,-#_4c3bba65b982f98549d00a5046eef123p1@AB527789
4.96e-26FFCP PHASE1:Hg19::chr20:6033140..6033181,-#_4c3bba65b982f98549d00a5046eef123p1@AB527789
7.1e-26FFCP PHASE2:Hg19::chr2:108994633..108994650,+#_c76fa72f110dcd701ec8a482bd861cedp4@SULT1C4
7.1e-26FFCP PHASE1:Hg19::chr2:108994633..108994650,+#_c76fa72f110dcd701ec8a482bd861cedp4@SULT1C4
9.68e-25FFCP PHASE2:Hg19::chr6:24358114..24358125,-#_d7e996521aa98432de9a220ff2bc4275p4@DCDC2
9.68e-25FFCP PHASE1:Hg19::chr6:24358114..24358125,-#_d7e996521aa98432de9a220ff2bc4275p4@DCDC2
1.6e-24FFCP PHASE2:Hg19::chr7:27219754..27219759,-#_0bb2eb7e83156d1c699d1b19601aa0afp16@HOXA10
1.6e-24FFCP PHASE2:Hg19::chr2:177053683..177053697,-#_0bb2eb7e83156d1c699d1b19601aa0afp1@LOC401022
1.6e-24FFCP PHASE1:Hg19::chr7:27219754..27219759,-#_0bb2eb7e83156d1c699d1b19601aa0afp16@HOXA10
1.6e-24FFCP PHASE1:Hg19::chr2:177053683..177053697,-#_0bb2eb7e83156d1c699d1b19601aa0afp1@LOC401022
1.66e-24FFCP PHASE2:Hg19::chr22:37823036..37823049,-#_d232e27a3a1827f87d7ea6c6c5dfde74p1@ENST00000451509
1.66e-24FFCP PHASE1:Hg19::chr22:37823036..37823049,-#_d232e27a3a1827f87d7ea6c6c5dfde74p1@ENST00000451509
1.87e-24FFCP PHASE2:Hg19::chr17:46675539..46675551,-#_330cbee8c9f8080ea8a0aaacecb4d38bp7@HOXB6
1.87e-24FFCP PHASE1:Hg19::chr17:46675539..46675551,-#_330cbee8c9f8080ea8a0aaacecb4d38bp7@HOXB6
2.63e-24FFCP PHASE2:Hg19::chr13:26619917..26619921,-#_d60b543821e83724dc687c93953f0219p@chr13:26619917..26619921, -
2.63e-24FFCP PHASE1:Hg19::chr13:26619917..26619921,-#_d60b543821e83724dc687c93953f0219p@chr13:26619917..26619921, -
2.91e-24FFCP PHASE2:Hg19::chr2:177016336..177016350,+#_f853cf9727353070f85b4c78f9d8e74bp1@HOXD4
2.91e-24FFCP PHASE1:Hg19::chr2:177016336..177016350,+#_f853cf9727353070f85b4c78f9d8e74bp1@HOXD4
2.98e-24FFCP PHASE1:Hg19::chr7:98453821..98453843,-#_fb8630d61a8d9477bf16ebcc1ffcd471p@chr7:98453821..98453843, -
2.98e-24FFCP PHASE2:Hg19::chr7:98453821..98453843,-#_fb8630d61a8d9477bf16ebcc1ffcd471p@chr7:98453821..98453843, -
3.49e-24FFCP PHASE1:Hg19::chr12:6485243..6485254,-#_a7b5dbc1f1de71024df8225f99beeee4p18@SCNN1A
3.49e-24FFCP PHASE2:Hg19::chr12:6485243..6485254,-#_a7b5dbc1f1de71024df8225f99beeee4p18@SCNN1A

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