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{{UBERON
{{UBERON
|id=UBERON:0001277
|alt_id=UBERON:FMA_17229-ZFA_0005124
|name=intestinal epithelium
|namespace=
|def="Simple columnar epithelium that lines the intestine, sometimes pseudostratified, with absorptive brush-border cells and mucous goblet cells clearly visible. <a href='ZFIN_jump?record=ZDB-PUB-050209-3'>Crosnier et al. 2005</a>" [Wikipedia:Intestinal_epithelium, ZFIN:curator]
|xref=BTO:0000781;;FMA:17229;;MA:0001536;;ncithesaurus:Intestinal_Epithelium;;SCTID:266135004;;TAO:0005124;;ZFA:0005124
|is_a=UBERON:0000485;;UBERON:0003350;;UBERON:0003929;;UBERON:0004808
|synonym="bowel epithelial tissue" EXACT [OBOL:automatic];;"bowel epithelium" EXACT [OBOL:automatic];;"epithelial tissue of bowel" EXACT [OBOL:automatic];;"epithelial tissue of intestine" EXACT [OBOL:automatic];;"epithelium of bowel" EXACT [OBOL:automatic];;"epithelium of intestine" EXACT [OBOL:automatic];;"intestine epithelial tissue" EXACT [OBOL:automatic];;"intestine epithelium" RELATED [];;"villous epithelium" EXACT [ZFA:0005124]
|comment=This class was created automatically from a combination of ontologies
|comment=This class was created automatically from a combination of ontologies
|alt_id=UBERON:FMA_17229-ZFA_0005124
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Simple columnar epithelium that lines the intestine, sometimes pseudostratified, with absorptive brush-border cells and mucous goblet cells clearly visible. <a href
|subset=uberon_slim;;vertebrate_core
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001277
|is_a=UBERON:0000485 ;;UBERON:0003350 ;;UBERON:0003929 ;;UBERON:0004808
|is_obsolete=
|located_in=
|located_in=
|name=intestinal epithelium
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000160;;UBERON:0001242
|part_of=UBERON:0000160;;UBERON:0001242
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Simple columnar epithelium that lines the intestine, sometimes pseudostratified, with absorptive brush-border cells and mucous goblet cells clearly visible. Crosnier et al. 2005[TAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Simple columnar epithelium that lines the intestine, sometimes pseudostratified, with absorptive brush-border cells and mucous goblet cells clearly visible. Crosnier et al. 2005[TAO]" xsd:string
|is_obsolete=
|subset=uberon_slim;;vertebrate_core
|preceded_by=
|synonym="bowel epithelial tissue" EXACT [OBOL:automatic];;"bowel epithelium" EXACT [OBOL:automatic];;"epithelial tissue of bowel" EXACT [OBOL:automatic];;"epithelial tissue of intestine" EXACT [OBOL:automatic];;"epithelium of bowel" EXACT [OBOL:automatic];;"epithelium of intestine" EXACT [OBOL:automatic];;"intestine epithelial tissue" EXACT [OBOL:automatic];;"intestine epithelium" RELATED [];;"villous epithelium" EXACT [ZFA:0005124]
|union_of=
|xref=BTO:0000781;;FMA:17229;;MA:0001536;;ncithesaurus:Intestinal_Epithelium;;SCTID:266135004;;TAO:0005124;;ZFA:0005124
}}
}}

Latest revision as of 17:17, 12 September 2014

Name:intestinal epithelium
Namespace:FANTOM
Definition:"Simple columnar epithelium that lines the intestine, sometimes pseudostratified, with absorptive brush-border cells and mucous goblet cells clearly visible. <a href
Xrefs:
links:

BTO:0000781
FMA:17229
MA:0001536
ncithesaurus:Intestinal_Epithelium
SCTID:266135004
TAO:0005124

ZFA:0005124
Synonyms: "bowel epithelial tissue" EXACT [OBOL:automatic]
"bowel epithelium" EXACT [OBOL:automatic]
"epithelial tissue of bowel" EXACT [OBOL:automatic]
"epithelial tissue of intestine" EXACT [OBOL:automatic]
"epithelium of bowel" EXACT [OBOL:automatic]
"epithelium of intestine" EXACT [OBOL:automatic]
"intestine epithelial tissue" EXACT [OBOL:automatic]
"intestine epithelium" RELATED []
"villous epithelium" EXACT [ZFA:0005124]
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_17229-ZFA_0005124
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000485(simple columnar epithelium),UBERON:0003350(epithelium of mucosa),UBERON:0003929(gut epithelium),UBERON:0004808(gastrointestinal system epithelium)
part_of:UBERON:0000160(intestine),UBERON:0001242(intestinal mucosa)



Children

is a:UBERON:0001902 (epithelium of small intestine)
part of:CL:0000510 (paneth cell),UBERON:0001213 (intestinal villus),CL:0002563 (intestinal epithelial cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001277 (intestinal epithelium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.55e-98FFCP PHASE1:Hg19::chr9:35801527..35801540,+#_5f14daa9cb2e9b8e2c2d0c5211b5176ep@chr9:35801527..35801540, +
1.55e-98FFCP PHASE2:Hg19::chr9:35801527..35801540,+#_5f14daa9cb2e9b8e2c2d0c5211b5176ep@chr9:35801527..35801540, +
4.97e-77FFCP PHASE1:Mm9::chr8:122335239..122335244,+#_22372d00caf071c04e6e1e73cc442dc2p@chr8:122335239..122335244, +
4.97e-77FFCP PHASE2:Mm9::chr8:122335239..122335244,+#_22372d00caf071c04e6e1e73cc442dc2p@chr8:122335239..122335244, +
1.86e-71FFCP PHASE2:Mm9::chr17:57201412..57201418,-#_2e0e0751050731fe732ef2d8550e752bp@chr17:57201412..57201418, -
1.86e-71FFCP PHASE1:Mm9::chr17:57201412..57201418,-#_2e0e0751050731fe732ef2d8550e752bp@chr17:57201412..57201418, -
1.41e-68FFCP PHASE2:Mm9::chr4:155434167..155434177,+#_12736514d8c7e7f7ad4978884648f0e1p@chr4:155434167..155434177, +
1.41e-68FFCP PHASE1:Mm9::chr4:155434167..155434177,+#_12736514d8c7e7f7ad4978884648f0e1p@chr4:155434167..155434177, +
1.7e-67FFCP PHASE2:Mm9::chr8:64192378..64192389,+#_c2532a5063daf34237811b0b9fcd774fp@chr8:64192378..64192389, +
1.7e-67FFCP PHASE1:Mm9::chr8:64192378..64192389,+#_c2532a5063daf34237811b0b9fcd774fp@chr8:64192378..64192389, +
2.4e-66FFCP PHASE1:Hg19::chr9:129830560..129830568,+#_7048fba6bc3dda713b803b2881392f00p@chr9:129830560..129830568, +
2.4e-66FFCP PHASE2:Hg19::chr2:127873614..127873626,+#_7048fba6bc3dda713b803b2881392f00p@chr2:127873614..127873626, +
2.4e-66FFCP PHASE1:Hg19::chr7:117329764..117329777,+#_7048fba6bc3dda713b803b2881392f00p1@ENST00000429014
2.4e-66FFCP PHASE2:Hg19::chr1:111023361..111023366,+#_7048fba6bc3dda713b803b2881392f00p1@CYMP
2.4e-66FFCP PHASE2:Hg19::chr18:7034928..7034943,-#_7048fba6bc3dda713b803b2881392f00p@chr18:7034928..7034943, -
2.4e-66FFCP PHASE1:Hg19::chr2:127873614..127873626,+#_7048fba6bc3dda713b803b2881392f00p@chr2:127873614..127873626, +
2.4e-66FFCP PHASE1:Hg19::chr1:111023361..111023366,+#_7048fba6bc3dda713b803b2881392f00p1@CYMP
2.4e-66FFCP PHASE2:Hg19::chr13:46093155..46093164,+#_7048fba6bc3dda713b803b2881392f00p@chr13:46093155..46093164, +
2.4e-66FFCP PHASE2:Hg19::chr9:129830560..129830568,+#_7048fba6bc3dda713b803b2881392f00p@chr9:129830560..129830568, +
2.4e-66FFCP PHASE1:Hg19::chr18:7034928..7034943,-#_7048fba6bc3dda713b803b2881392f00p@chr18:7034928..7034943, -
2.4e-66FFCP PHASE2:Hg19::chr7:117329764..117329777,+#_7048fba6bc3dda713b803b2881392f00p1@ENST00000429014
2.4e-66FFCP PHASE2:Hg19::chr6:22919616..22919625,-#_7048fba6bc3dda713b803b2881392f00p@chr6:22919616..22919625, -
2.4e-66FFCP PHASE1:Hg19::chr13:46093155..46093164,+#_7048fba6bc3dda713b803b2881392f00p@chr13:46093155..46093164, +
2.4e-66FFCP PHASE1:Hg19::chr6:22919616..22919625,-#_7048fba6bc3dda713b803b2881392f00p@chr6:22919616..22919625, -
3.35e-66FFCP PHASE2:Hg19::chr20:17691468..17691474,-#_c5fbe3a48348b1afe09da4496ffa7bc7p@chr20:17691468..17691474, -
3.35e-66FFCP PHASE2:Hg19::chrX:21849506..21849512,-#_c5fbe3a48348b1afe09da4496ffa7bc7p@chrX:21849506..21849512, -
3.35e-66FFCP PHASE1:Hg19::chr20:17691468..17691474,-#_c5fbe3a48348b1afe09da4496ffa7bc7p@chr20:17691468..17691474, -
3.35e-66FFCP PHASE2:Hg19::chr2:205409703..205409714,+#_c5fbe3a48348b1afe09da4496ffa7bc7p@chr2:205409703..205409714, +
3.35e-66FFCP PHASE2:Hg19::chr1:6420713..6420725,-#_c5fbe3a48348b1afe09da4496ffa7bc7p16@ACOT7
3.35e-66FFCP PHASE1:Hg19::chr2:205409703..205409714,+#_c5fbe3a48348b1afe09da4496ffa7bc7p@chr2:205409703..205409714, +
3.35e-66FFCP PHASE1:Hg19::chr1:6420713..6420725,-#_c5fbe3a48348b1afe09da4496ffa7bc7p16@ACOT7
3.35e-66FFCP PHASE1:Hg19::chrX:21849506..21849512,-#_c5fbe3a48348b1afe09da4496ffa7bc7p@chrX:21849506..21849512, -
4.67e-66FFCP PHASE2:Hg19::chr2:28340361..28340371,+#_8f14625ba3d0d7ad5b1f0609d35ac5c6p@chr2:28340361..28340371, +
4.67e-66FFCP PHASE1:Hg19::chr11:89925073..89925074,+#_8f14625ba3d0d7ad5b1f0609d35ac5c6p@chr11:89925073..89925074, +
4.67e-66FFCP PHASE1:Hg19::chr2:28340361..28340371,+#_8f14625ba3d0d7ad5b1f0609d35ac5c6p@chr2:28340361..28340371, +
4.67e-66FFCP PHASE1:Hg19::chr9:138591077..138591111,-#_8f14625ba3d0d7ad5b1f0609d35ac5c6p@chr9:138591077..138591111, -
4.67e-66FFCP PHASE2:Hg19::chr11:89925073..89925074,+#_8f14625ba3d0d7ad5b1f0609d35ac5c6p@chr11:89925073..89925074, +
4.67e-66FFCP PHASE2:Hg19::chr9:138591077..138591111,-#_8f14625ba3d0d7ad5b1f0609d35ac5c6p@chr9:138591077..138591111, -
3.55e-65FFCP PHASE2:Mm9::chr3:122215917..122215967,-#_e57ca6e9a27e2ce1565ab3232c79b402p@chr3:122215917..122215967, -
3.55e-65FFCP PHASE1:Mm9::chr3:122215917..122215967,-#_e57ca6e9a27e2ce1565ab3232c79b402p@chr3:122215917..122215967, -
7.03e-65FFCP PHASE2:Mm9::chr2:143738263..143738267,+#_3d94fb60b4518756f0b5c8b80b70e547p@chr2:143738263..143738267, +
7.03e-65FFCP PHASE1:Mm9::chr2:143738263..143738267,+#_3d94fb60b4518756f0b5c8b80b70e547p@chr2:143738263..143738267, +
2.43e-61FFCP PHASE1:Mm9::chr5:135465906..135465912,+#_b8033ce264f1e858348835f254ab4fc5p@chr5:135465906..135465912, +
2.43e-61FFCP PHASE2:Mm9::chr5:135465906..135465912,+#_b8033ce264f1e858348835f254ab4fc5p@chr5:135465906..135465912, +
5.84e-61FFCP PHASE2:Mm9::chr7:4101973..4101978,-#_7ce70bdbf2d222efae735b37c899894dp4@Leng9
5.84e-61FFCP PHASE1:Mm9::chr7:4101973..4101978,-#_7ce70bdbf2d222efae735b37c899894dp4@Leng9
1.29e-60FFCP PHASE1:Mm9::chr7:4101821..4101832,-#_06426ab8272a70a48ba6cd8c5891a0a1p5@Leng9
1.29e-60FFCP PHASE2:Mm9::chr7:4101821..4101832,-#_06426ab8272a70a48ba6cd8c5891a0a1p5@Leng9
5.24e-58FFCP PHASE2:Mm9::chr12:86771033..86771037,-#_9613e0aa713778bcac15063a2d63a1fap@chr12:86771033..86771037, -
5.24e-58FFCP PHASE1:Mm9::chr12:86771033..86771037,-#_9613e0aa713778bcac15063a2d63a1fap@chr12:86771033..86771037, -
6.35e-57FFCP PHASE2:Mm9::chr5:145119593..145119596,+#_57aaec4fc472d7acdccd74d4ae5d240dp@chr5:145119593..145119596, +
6.35e-57FFCP PHASE1:Mm9::chr5:145119593..145119596,+#_57aaec4fc472d7acdccd74d4ae5d240dp@chr5:145119593..145119596, +
8.86e-57FFCP PHASE2:Mm9::chr13:49066571..49066574,-#_ff21f4706f2a54f972a3c44d2365c16dp@chr13:49066571..49066574, -
8.86e-57FFCP PHASE1:Mm9::chr13:49066571..49066574,-#_ff21f4706f2a54f972a3c44d2365c16dp@chr13:49066571..49066574, -
1.46e-56FFCP PHASE2:Mm9::chr11:96797681..96797709,-#_de10b43fb802cbf0365aa2c0716678b3p@chr11:96797681..96797709, -
1.46e-56FFCP PHASE1:Mm9::chr11:96797681..96797709,-#_de10b43fb802cbf0365aa2c0716678b3p@chr11:96797681..96797709, -
2.19e-56FFCP PHASE2:Mm9::chr18:36576247..36576252,-#_7d32566913575c760bd7b489b327a79ep@chr18:36576247..36576252, -
2.19e-56FFCP PHASE1:Mm9::chr18:36576247..36576252,-#_7d32566913575c760bd7b489b327a79ep@chr18:36576247..36576252, -
5.47e-56FFCP PHASE1:Mm9::chr9:66888939..66888949,+#_9f764d1715a8d5192e3ca90a8d106d49p@chr9:66888939..66888949, +
5.47e-56FFCP PHASE2:Mm9::chr9:66888939..66888949,+#_9f764d1715a8d5192e3ca90a8d106d49p@chr9:66888939..66888949, +
6.45e-56FFCP PHASE1:Mm9::chr17:46693370..46693378,+#_ca05fcaebac12321071eab5e6c35ac8dp@chr17:46693370..46693378, +
6.45e-56FFCP PHASE2:Mm9::chr17:46693370..46693378,+#_ca05fcaebac12321071eab5e6c35ac8dp@chr17:46693370..46693378, +
1.93e-53FFCP PHASE2:Mm9::chr7:52317191..52317193,+#_5fb4dac18f4de899971cb843c2652fbap@chr7:52317191..52317193, +
1.93e-53FFCP PHASE1:Mm9::chr7:52317191..52317193,+#_5fb4dac18f4de899971cb843c2652fbap@chr7:52317191..52317193, +
2.55e-53FFCP PHASE2:Mm9::chr5:135442713..135442733,+#_a62e44d360f7f8f8b40867882353a6acp@chr5:135442713..135442733, +
2.55e-53FFCP PHASE1:Mm9::chr5:135442713..135442733,+#_a62e44d360f7f8f8b40867882353a6acp@chr5:135442713..135442733, +
5.3e-53FFCP PHASE1:Mm9::chr2:38781010..38781017,+#_b5ea6a098da589319097c6d8b76e1277p@chr2:38781010..38781017, +
5.3e-53FFCP PHASE2:Mm9::chr2:38781010..38781017,+#_b5ea6a098da589319097c6d8b76e1277p@chr2:38781010..38781017, +
3.46e-52FFCP PHASE2:Mm9::chr10:80565428..80565433,+#_abb205a18436bbc3925f8c5982a3ea41p@chr10:80565428..80565433, +
3.46e-52FFCP PHASE1:Mm9::chr10:80565428..80565433,+#_abb205a18436bbc3925f8c5982a3ea41p@chr10:80565428..80565433, +
7.4e-52FFCP PHASE2:Mm9::chr11:35759012..35759018,+#_584a424fda2a68fe4c4181b41852d720p@chr11:35759012..35759018, +
7.4e-52FFCP PHASE1:Mm9::chr11:35759012..35759018,+#_584a424fda2a68fe4c4181b41852d720p@chr11:35759012..35759018, +
1.0e-51FFCP PHASE1:Mm9::chr18:66636209..66636215,-#_5f0875edfb8ca63afae5d304b4dbe500p@chr18:66636209..66636215, -
1.0e-51FFCP PHASE2:Mm9::chr18:66636209..66636215,-#_5f0875edfb8ca63afae5d304b4dbe500p@chr18:66636209..66636215, -
1.17e-51FFCP PHASE2:Mm9::chr16:78268076..78268083,-#_ff045949e558e5a6c13189d8f6867e55p@chr16:78268076..78268083, -
1.17e-51FFCP PHASE1:Mm9::chr16:78268076..78268083,-#_ff045949e558e5a6c13189d8f6867e55p@chr16:78268076..78268083, -
3.1e-50FFCP PHASE2:Hg19::chr2:127711472..127711475,+#_849581c949fa06749f8828a1928efcb7p@chr2:127711472..127711475, +
3.1e-50FFCP PHASE1:Hg19::chr3:185823573..185823578,-#_849581c949fa06749f8828a1928efcb7p26@ETV5
3.1e-50FFCP PHASE2:Hg19::chr13:48703799..48703838,-#_849581c949fa06749f8828a1928efcb7p@chr13:48703799..48703838, -
3.1e-50FFCP PHASE1:Hg19::chr7:137749883..137749887,+#_849581c949fa06749f8828a1928efcb7p@chr7:137749883..137749887, +
3.1e-50FFCP PHASE1:Hg19::chr2:127711416..127711419,+#_849581c949fa06749f8828a1928efcb7p@chr2:127711416..127711419, +
3.1e-50FFCP PHASE2:Hg19::chr18:28720966..28720970,+#_849581c949fa06749f8828a1928efcb7p@chr18:28720966..28720970, +
3.1e-50FFCP PHASE1:Hg19::chr13:46093198..46093203,+#_849581c949fa06749f8828a1928efcb7p@chr13:46093198..46093203, +
3.1e-50FFCP PHASE1:Hg19::chr4:157174075..157174084,+#_849581c949fa06749f8828a1928efcb7p@chr4:157174075..157174084, +
3.1e-50FFCP PHASE2:Hg19::chr13:32790605..32790619,+#_849581c949fa06749f8828a1928efcb7p@chr13:32790605..32790619, +
3.1e-50FFCP PHASE2:Hg19::chr7:87232419..87232430,-#_849581c949fa06749f8828a1928efcb7p@chr7:87232419..87232430, -
3.1e-50FFCP PHASE2:Hg19::chr2:163302780..163302789,-#_849581c949fa06749f8828a1928efcb7p@chr2:163302780..163302789, -
3.1e-50FFCP PHASE1:Hg19::chr8:128419359..128419367,-#_849581c949fa06749f8828a1928efcb7p@chr8:128419359..128419367, -
3.1e-50FFCP PHASE1:Hg19::chr1:118658073..118658082,-#_849581c949fa06749f8828a1928efcb7p@chr1:118658073..118658082, -
3.1e-50FFCP PHASE2:Hg19::chr4:157174108..157174136,+#_849581c949fa06749f8828a1928efcb7p@chr4:157174108..157174136, +
3.1e-50FFCP PHASE2:Hg19::chr3:171088092..171088113,-#_849581c949fa06749f8828a1928efcb7p@chr3:171088092..171088113, -
3.1e-50FFCP PHASE1:Hg19::chr8:39792182..39792188,+#_849581c949fa06749f8828a1928efcb7p14@IDO2
3.1e-50FFCP PHASE1:Hg19::chr7:89797154..89797172,+#_849581c949fa06749f8828a1928efcb7p9@STEAP2
3.1e-50FFCP PHASE2:Hg19::chr9:98505341..98505348,+#_849581c949fa06749f8828a1928efcb7p@chr9:98505341..98505348, +
3.1e-50FFCP PHASE2:Hg19::chr4:71222797..71222807,+#_849581c949fa06749f8828a1928efcb7p@chr4:71222797..71222807, +
3.1e-50FFCP PHASE2:Hg19::chr3:24797832..24797838,-#_849581c949fa06749f8828a1928efcb7p@chr3:24797832..24797838, -
3.1e-50FFCP PHASE1:Hg19::chr8:128259602..128259609,-#_849581c949fa06749f8828a1928efcb7p@chr8:128259602..128259609, -
3.1e-50FFCP PHASE1:Hg19::chr3:24797750..24797759,-#_849581c949fa06749f8828a1928efcb7p@chr3:24797750..24797759, -
3.1e-50FFCP PHASE1:Hg19::chr13:28541442..28541451,-#_849581c949fa06749f8828a1928efcb7p@chr13:28541442..28541451, -
3.1e-50FFCP PHASE2:Hg19::chr8:127568784..127568794,+#_849581c949fa06749f8828a1928efcb7p6@ENST00000524320










Property "Property value" (as page type) with input value "UBPROP:0000001 "Simple columnar epithelium that lines the intestine, sometimes pseudostratified, with absorptive brush-border cells and mucous goblet cells clearly visible. Crosnier et al. 2005[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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