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{{UBERON
{{UBERON
|id=UBERON:0010359
|alt_id=
|name=pharyngeal arch mesenchyme from neural crest
|namespace=
|def=
|xref=
|is_a=UBERON:0003104;;UBERON:0005291;;UBERON:0010313
|synonym=
|comment=Partially implements UBERONREF:0000002 NC meeting scheme
|comment=Partially implements UBERONREF:0000002 NC meeting scheme
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=UBERON:0002342
|develops_from=UBERON:0002342
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0010359
|is_a=UBERON:0004119 ;;UBERON:0005291 ;;UBERON:0014387
|is_obsolete=
|located_in=
|located_in=
|name=pharyngeal arch mesenchyme from neural crest
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0010046
|part_of=UBERON:0010046
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Latest revision as of 18:09, 12 September 2014

Name:pharyngeal arch mesenchyme from neural crest
Namespace:FANTOM
Comments:Partially implements UBERONREF:0000002 NC meeting scheme

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004119(endoderm-derived structure),UBERON:0005291(embryonic tissue),UBERON:0014387(mesenchyme derived from neural crest)
develops_from:UBERON:0002342(neural crest)
part_of:UBERON:0010046(entire pharyngeal arch associated mesenchyme)



Children

is a:UBERON:0010259 (1st arch mesenchyme from neural crest)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010359 (pharyngeal arch mesenchyme from neural crest), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_5229b2548a1ef10bfa83466212b3d17ep14@C17orf67
5.42e-195FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_5229b2548a1ef10bfa83466212b3d17ep14@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_64c5d793ba2a39c36fd0dab1164eb368p11@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_64c5d793ba2a39c36fd0dab1164eb368p12@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_64c5d793ba2a39c36fd0dab1164eb368p@chr8:57353655..57353662, -
9.37e-99FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_64c5d793ba2a39c36fd0dab1164eb368p13@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_64c5d793ba2a39c36fd0dab1164eb368p11@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_64c5d793ba2a39c36fd0dab1164eb368p13@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_64c5d793ba2a39c36fd0dab1164eb368p@chr8:57353655..57353662, -
9.37e-99FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_64c5d793ba2a39c36fd0dab1164eb368p12@C17orf67
2.39e-66FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_c1763e31642d00d431883dd097348763p@chr5:75912402..75912418, -
2.39e-66FFCP PHASE1:Hg19::chr4:151503647..151503656,+#_c1763e31642d00d431883dd097348763p14@MAB21L2
2.39e-66FFCP PHASE2:Hg19::chr4:151503647..151503656,+#_c1763e31642d00d431883dd097348763p14@MAB21L2
2.39e-66FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_c1763e31642d00d431883dd097348763p@chr5:75912402..75912418, -
4.66e-66FFCP PHASE1:Hg19::chr4:151505582..151505614,+#_2f7e313c01840b2f4b8107264d61ba0dp@chr4:151505582..151505614, +
4.66e-66FFCP PHASE2:Hg19::chr4:151505582..151505614,+#_2f7e313c01840b2f4b8107264d61ba0dp@chr4:151505582..151505614, +
1.46e-50FFCP PHASE1:Hg19::chr3:157823323..157823328,+#_cac2d57d7484e62e06767b93c101b3fdp17@RSRC1
1.46e-50FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_cac2d57d7484e62e06767b93c101b3fdp@chr8:57354278..57354286, +
1.46e-50FFCP PHASE1:Hg19::chr17:54893196..54893207,-#_cac2d57d7484e62e06767b93c101b3fdp9@C17orf67
1.46e-50FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_cac2d57d7484e62e06767b93c101b3fdp@chr8:57354278..57354286, +
1.46e-50FFCP PHASE2:Hg19::chr17:54893196..54893207,-#_cac2d57d7484e62e06767b93c101b3fdp9@C17orf67
1.46e-50FFCP PHASE2:Hg19::chr3:157823323..157823328,+#_cac2d57d7484e62e06767b93c101b3fdp17@RSRC1
2.42e-50FFCP PHASE2:Hg19::chr8:57802672..57802682,-#_9a00300ea9e2e0c455bbd8f82aff9b56p@chr8:57802672..57802682, -
2.42e-50FFCP PHASE1:Hg19::chr8:57802672..57802682,-#_9a00300ea9e2e0c455bbd8f82aff9b56p@chr8:57802672..57802682, -
3.99e-50FFCP PHASE2:Hg19::chr12:85673913..85673919,+#_cbf17f5bdf5115eb05ac38d87a024efdp7@ALX1
3.99e-50FFCP PHASE1:Hg19::chr5:75913767..75913778,-#_cbf17f5bdf5115eb05ac38d87a024efdp@chr5:75913767..75913778, -
3.99e-50FFCP PHASE1:Hg19::chr17:76930661..76930674,+#_cbf17f5bdf5115eb05ac38d87a024efdp1@AK123925
3.99e-50FFCP PHASE1:Hg19::chr12:85673913..85673919,+#_cbf17f5bdf5115eb05ac38d87a024efdp7@ALX1
3.99e-50FFCP PHASE2:Hg19::chr5:75913767..75913778,-#_cbf17f5bdf5115eb05ac38d87a024efdp@chr5:75913767..75913778, -
3.99e-50FFCP PHASE2:Hg19::chr17:76930661..76930674,+#_cbf17f5bdf5115eb05ac38d87a024efdp1@AK123925
6.58e-50FFCP PHASE1:Hg19::chr2:33519090..33519092,+#_212b0282c64f9022aa27bef333539601p@chr2:33519090..33519092, +
6.58e-50FFCP PHASE2:Hg19::chr13:28961248..28961262,-#_212b0282c64f9022aa27bef333539601p23@FLT1
6.58e-50FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_212b0282c64f9022aa27bef333539601p@chr2:33519090..33519092, +
6.58e-50FFCP PHASE1:Hg19::chr13:28961248..28961262,-#_212b0282c64f9022aa27bef333539601p23@FLT1
6.62e-41FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_3a0de850a933738d84f153e54fb26d67p@chr8:57354143..57354152, +
6.62e-41FFCP PHASE2:Hg19::chr8:57353779..57353790,-#_3a0de850a933738d84f153e54fb26d67p@chr8:57353779..57353790, -
6.62e-41FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_3a0de850a933738d84f153e54fb26d67p@chr8:57353666..57353675, -
6.62e-41FFCP PHASE1:Hg19::chr8:57353779..57353790,-#_3a0de850a933738d84f153e54fb26d67p@chr8:57353779..57353790, -
6.62e-41FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_3a0de850a933738d84f153e54fb26d67p@chr8:57354143..57354152, +
6.62e-41FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_3a0de850a933738d84f153e54fb26d67p@chr8:57353666..57353675, -
1.48e-40FFCP PHASE2:Hg19::chr20:49253452..49253461,-#_aad05e3dc4ae5af5d30c85167cd819b9p12@FAM65C
1.48e-40FFCP PHASE1:Hg19::chr1:75600308..75600316,+#_aad05e3dc4ae5af5d30c85167cd819b9p8@LHX8
1.48e-40FFCP PHASE2:Hg19::chr1:6615391..6615401,+#_aad05e3dc4ae5af5d30c85167cd819b9p2@TAS1R1
1.48e-40FFCP PHASE2:Hg19::chr1:75600308..75600316,+#_aad05e3dc4ae5af5d30c85167cd819b9p8@LHX8
1.48e-40FFCP PHASE1:Hg19::chr20:49253452..49253461,-#_aad05e3dc4ae5af5d30c85167cd819b9p12@FAM65C
1.48e-40FFCP PHASE1:Hg19::chr1:6615391..6615401,+#_aad05e3dc4ae5af5d30c85167cd819b9p2@TAS1R1
2.21e-40FFCP PHASE1:Hg19::chr5:75912831..75912842,-#_2457e99c137acb2994afc425eec10654p@chr5:75912831..75912842, -
2.21e-40FFCP PHASE1:Hg19::chr16:67687543..67687559,-#_2457e99c137acb2994afc425eec10654p@chr16:67687543..67687559, -
2.21e-40FFCP PHASE2:Hg19::chr5:75912831..75912842,-#_2457e99c137acb2994afc425eec10654p@chr5:75912831..75912842, -
2.21e-40FFCP PHASE2:Hg19::chr16:67687543..67687559,-#_2457e99c137acb2994afc425eec10654p@chr16:67687543..67687559, -
3.3e-40FFCP PHASE1:Hg19::chr6:46190219..46190230,-#_36b21cf007f092be76db258a1212f06ap@chr6:46190219..46190230, -
3.3e-40FFCP PHASE2:Hg19::chr9:125165007..125165016,+#_36b21cf007f092be76db258a1212f06ap@chr9:125165007..125165016, +
3.3e-40FFCP PHASE2:Hg19::chr6:46190219..46190230,-#_36b21cf007f092be76db258a1212f06ap@chr6:46190219..46190230, -
3.3e-40FFCP PHASE1:Hg19::chr9:125165007..125165016,+#_36b21cf007f092be76db258a1212f06ap@chr9:125165007..125165016, +
1.84e-34FFCP PHASE1:Hg19::chr4:8594472..8594473,+#_a41273d7148f418f746aa603d1e7952cp4@CPZ
1.84e-34FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_a41273d7148f418f746aa603d1e7952cp@chr10:15760985..15760992, -
1.84e-34FFCP PHASE2:Hg19::chr4:8594472..8594473,+#_a41273d7148f418f746aa603d1e7952cp4@CPZ
1.84e-34FFCP PHASE1:Hg19::chr8:57359557..57359570,-#_a41273d7148f418f746aa603d1e7952cp5@PENK
1.84e-34FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_a41273d7148f418f746aa603d1e7952cp@chr10:15760985..15760992, -
1.84e-34FFCP PHASE2:Hg19::chr8:57359557..57359570,-#_a41273d7148f418f746aa603d1e7952cp5@PENK
2.58e-34FFCP PHASE1:Hg19::chr14:61125018..61125037,-#_df9a5cc24d7e29c51ef8b49f7a896df3p9@SIX1
2.58e-34FFCP PHASE2:Hg19::chr14:61125018..61125037,-#_df9a5cc24d7e29c51ef8b49f7a896df3p9@SIX1
5.05e-34FFCP PHASE2:Hg19::chr6:134327986..134327991,-#_6a073dfbcf9d594c3c4272dc01a2f62fp@chr6:134327986..134327991, -
5.05e-34FFCP PHASE1:Hg19::chr6:134327986..134327991,-#_6a073dfbcf9d594c3c4272dc01a2f62fp@chr6:134327986..134327991, -
7.06e-34FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_4d99bcfe1a2d9a2052111a6c61fb0b80p@chr8:57353676..57353688, -
7.06e-34FFCP PHASE2:Hg19::chr13:58291223..58291226,+#_4d99bcfe1a2d9a2052111a6c61fb0b80p@chr13:58291223..58291226, +
7.06e-34FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_4d99bcfe1a2d9a2052111a6c61fb0b80p@chr8:57353676..57353688, -
7.06e-34FFCP PHASE1:Hg19::chr13:58291223..58291226,+#_4d99bcfe1a2d9a2052111a6c61fb0b80p@chr13:58291223..58291226, +
9.85e-34FFCP PHASE1:Hg19::chr5:127873659..127873667,-#_634c2e344b012e7defb13ed759e54a14p12@FBN2
9.85e-34FFCP PHASE1:Hg19::chr5:19721484..19721507,-#_634c2e344b012e7defb13ed759e54a14p@chr5:19721484..19721507, -
9.85e-34FFCP PHASE1:Hg19::chrX:133792540..133792551,-#_634c2e344b012e7defb13ed759e54a14p4@PLAC1
9.85e-34FFCP PHASE2:Hg19::chr5:127873659..127873667,-#_634c2e344b012e7defb13ed759e54a14p12@FBN2
9.85e-34FFCP PHASE2:Hg19::chr5:19721484..19721507,-#_634c2e344b012e7defb13ed759e54a14p@chr5:19721484..19721507, -
9.85e-34FFCP PHASE2:Hg19::chrX:133792540..133792551,-#_634c2e344b012e7defb13ed759e54a14p4@PLAC1
7.48e-30FFCP PHASE1:Hg19::chr8:57353804..57353821,-#_7b5a21cb970af421c857d98607a57dd9p@chr8:57353804..57353821, -
7.48e-30FFCP PHASE1:Hg19::chr8:57354360..57354367,+#_7b5a21cb970af421c857d98607a57dd9p@chr8:57354360..57354367, +
7.48e-30FFCP PHASE2:Hg19::chr8:57353804..57353821,-#_7b5a21cb970af421c857d98607a57dd9p@chr8:57353804..57353821, -
7.48e-30FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_7b5a21cb970af421c857d98607a57dd9p@chr8:57353982..57353991, -
7.48e-30FFCP PHASE2:Hg19::chr8:57354360..57354367,+#_7b5a21cb970af421c857d98607a57dd9p@chr8:57354360..57354367, +
7.48e-30FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_7b5a21cb970af421c857d98607a57dd9p@chr8:57353982..57353991, -
9.99e-30FFCP PHASE2:Hg19::chr10:15762107..15762114,-#_d4e3fab8a5b564837c096da968d7d5cbp10@ITGA8
9.99e-30FFCP PHASE1:Hg19::chr3:157824322..157824334,-#_d4e3fab8a5b564837c096da968d7d5cbp7@SHOX2
9.99e-30FFCP PHASE1:Hg19::chr10:15762107..15762114,-#_d4e3fab8a5b564837c096da968d7d5cbp10@ITGA8
9.99e-30FFCP PHASE2:Hg19::chr3:157824322..157824334,-#_d4e3fab8a5b564837c096da968d7d5cbp7@SHOX2
1.33e-29FFCP PHASE1:Hg19::chrX:132670143..132670152,-#_073b199083361d3b6481421ec51ec226p@chrX:132670143..132670152, -
1.33e-29FFCP PHASE1:Hg19::chr17:79071218..79071221,-#_073b199083361d3b6481421ec51ec226p@chr17:79071218..79071221, -
1.33e-29FFCP PHASE1:Hg19::chr22:28193943..28193956,-#_073b199083361d3b6481421ec51ec226p@chr22:28193943..28193956, -
1.33e-29FFCP PHASE2:Hg19::chrX:132670143..132670152,-#_073b199083361d3b6481421ec51ec226p@chrX:132670143..132670152, -
1.33e-29FFCP PHASE2:Hg19::chr17:79071218..79071221,-#_073b199083361d3b6481421ec51ec226p@chr17:79071218..79071221, -
1.33e-29FFCP PHASE2:Hg19::chr22:28193943..28193956,-#_073b199083361d3b6481421ec51ec226p@chr22:28193943..28193956, -
1.78e-29FFCP PHASE1:Hg19::chr1:21904551..21904569,-#_943cadccb61e314a691abe84567c3793p@chr1:21904551..21904569, -
1.78e-29FFCP PHASE2:Hg19::chr1:21904551..21904569,-#_943cadccb61e314a691abe84567c3793p@chr1:21904551..21904569, -
3.16e-29FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_55521dbd832614524899be834613990fp@chr8:57359975..57359992, -
3.16e-29FFCP PHASE1:Hg19::chr1:156470861..156470868,-#_55521dbd832614524899be834613990fp18@MEF2D
3.16e-29FFCP PHASE1:Hg19::chr14:89044406..89044416,+#_55521dbd832614524899be834613990fp@chr14:89044406..89044416, +
3.16e-29FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_55521dbd832614524899be834613990fp@chr8:57359975..57359992, -
3.16e-29FFCP PHASE2:Hg19::chr1:156470861..156470868,-#_55521dbd832614524899be834613990fp18@MEF2D
3.16e-29FFCP PHASE2:Hg19::chr14:89044406..89044416,+#_55521dbd832614524899be834613990fp@chr14:89044406..89044416, +
4.2e-29FFCP PHASE2:Hg19::chr4:151503350..151503358,+#_d3d743ac5dcff89455207629a0380996p11@MAB21L2
4.2e-29FFCP PHASE1:Hg19::chr1:6615468..6615485,+#_d3d743ac5dcff89455207629a0380996p1@TAS1R1

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