UBERON:0010912: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment=AO notes: VSAO def logically wrong | |comment=AO notes: VSAO def logically wrong | ||
|created_by= | |created_by= | ||
| | |def="Anatomical cluster consisting of the skeletal elements (i.e. bone elements, cartilage elements, cartilage condensations) that are part of an individual subdivision of the organism. Excludes joints." [UBERON:cjm, UBERONREF:0000003] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0010912 | |||
|is_a=UBERON:0011216 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=subdivision of skeleton | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0000075;;UBERON:0004288 | |part_of=UBERON:0000075;;UBERON:0004288 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical cluster consisting of the skeletal elements that are part of the skeleton.[VSAO]" xsd:string | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical cluster consisting of the skeletal elements that are part of the skeleton.[VSAO]" xsd:string | ||
| | |subset= | ||
| | |synonym="skeletal subdivision" EXACT [VSAO:0000042];;"subdivision of skeleton (in vivo)" RELATED [FMA:23879] | ||
|union_of= | |||
|xref=FMA:23879;;SCTID:129140006;;VSAO:0000042 | |||
}} | }} | ||
Latest revision as of 18:10, 12 September 2014
| Name: | subdivision of skeleton | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Anatomical cluster consisting of the skeletal elements (i.e. bone elements, cartilage elements, cartilage condensations) that are part of an individual subdivision of the organism. Excludes joints." [UBERON:cjm, UBERONREF:0000003] | ||
| Xrefs: |
| ||
| Synonyms: |
"skeletal subdivision" EXACT [VSAO:0000042] "subdivision of skeleton (in vivo)" RELATED [FMA:23879] | ||
| Comments: | AO notes: VSAO def logically wrong |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0011216(organ system subdivision) |
|---|---|
| part_of: | UBERON:0000075(subdivision of skeletal system),UBERON:0004288(skeleton) |
Children
| is a: | UBERON:0001708 (jaw skeleton),UBERON:0002091 (appendicular skeleton),UBERON:0003277 (skeleton of upper jaw),UBERON:0010364 (dermal skeleton),UBERON:0010712 (limb skeleton subdivision),UBERON:0011582 (paired limb/fin skeleton),UBERON:0012476 (skeleton of pelvic complex) |
|---|---|
| disjoint from: | UBERON:0002529 (limb segment),UBERON:0010538 (paired limb/fin segment) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
- 1350-25C3 (bone (os femoris), neonate N20)
- 1525-43A6 (bone (os femoris), neonate N16)
- 1985-43F5 (bone (os femoris), neonate N02)
- 56-12G2 (bone (os femoris), adult)
Mouse (Mus musculus)
- 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
- 1350-25C3 (bone (os femoris), neonate N20)
- 1525-43A6 (bone (os femoris), neonate N16)
- 1985-43F5 (bone (os femoris), neonate N02)
- 56-12G2 (bone (os femoris), adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010912 (subdivision of skeleton), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_e65afa4e69e81d10b3d1b435bf09ce7c | p14@C17orf67 |
| 5.42e-195 | FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_e65afa4e69e81d10b3d1b435bf09ce7c | p14@C17orf67 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_b5fb1371b858e40ca80326f6756e8bab | p13@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_b5fb1371b858e40ca80326f6756e8bab | p12@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_b5fb1371b858e40ca80326f6756e8bab | p@chr8:57353655..57353662, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_b5fb1371b858e40ca80326f6756e8bab | p@chr8:57353655..57353662, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_b5fb1371b858e40ca80326f6756e8bab | p12@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_b5fb1371b858e40ca80326f6756e8bab | p11@C17orf67 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_b5fb1371b858e40ca80326f6756e8bab | p11@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_b5fb1371b858e40ca80326f6756e8bab | p13@C17orf67 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr4:151503647..151503656,+#_d6b7e48d65de67b857ad275cd4d5a90e | p14@MAB21L2 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_d6b7e48d65de67b857ad275cd4d5a90e | p@chr5:75912402..75912418, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_d6b7e48d65de67b857ad275cd4d5a90e | p@chr5:75912402..75912418, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr4:151503647..151503656,+#_d6b7e48d65de67b857ad275cd4d5a90e | p14@MAB21L2 |
| 4.66e-66 | FFCP PHASE2:Hg19::chr4:151505582..151505614,+#_8282dc2f06076968cef0d41cb79118d9 | p@chr4:151505582..151505614, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr4:151505582..151505614,+#_8282dc2f06076968cef0d41cb79118d9 | p@chr4:151505582..151505614, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_cf5ecc009d8fa308bfb7fdd7a6066408 | p@chr8:57354278..57354286, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr17:54893196..54893207,-#_cf5ecc009d8fa308bfb7fdd7a6066408 | p9@C17orf67 |
| 1.46e-50 | FFCP PHASE2:Hg19::chr3:157823323..157823328,+#_cf5ecc009d8fa308bfb7fdd7a6066408 | p17@RSRC1 |
| 1.46e-50 | FFCP PHASE1:Hg19::chr3:157823323..157823328,+#_cf5ecc009d8fa308bfb7fdd7a6066408 | p17@RSRC1 |
| 1.46e-50 | FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_cf5ecc009d8fa308bfb7fdd7a6066408 | p@chr8:57354278..57354286, + |
| 1.46e-50 | FFCP PHASE1:Hg19::chr17:54893196..54893207,-#_cf5ecc009d8fa308bfb7fdd7a6066408 | p9@C17orf67 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr8:57802672..57802682,-#_1669097a203b3c4c7eb83afd5c9447d9 | p@chr8:57802672..57802682, - |
| 2.42e-50 | FFCP PHASE1:Hg19::chr8:57802672..57802682,-#_1669097a203b3c4c7eb83afd5c9447d9 | p@chr8:57802672..57802682, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr5:75913767..75913778,-#_64ae8e5826146c33d082c753768dbe3b | p@chr5:75913767..75913778, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr17:76930661..76930674,+#_64ae8e5826146c33d082c753768dbe3b | p1@AK123925 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr17:76930661..76930674,+#_64ae8e5826146c33d082c753768dbe3b | p1@AK123925 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr5:75913767..75913778,-#_64ae8e5826146c33d082c753768dbe3b | p@chr5:75913767..75913778, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr12:85673913..85673919,+#_64ae8e5826146c33d082c753768dbe3b | p7@ALX1 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr12:85673913..85673919,+#_64ae8e5826146c33d082c753768dbe3b | p7@ALX1 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr13:28961248..28961262,-#_9ad92169fd82d05b3954f3bc6b09098f | p23@FLT1 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_9ad92169fd82d05b3954f3bc6b09098f | p@chr2:33519090..33519092, + |
| 6.58e-50 | FFCP PHASE1:Hg19::chr13:28961248..28961262,-#_9ad92169fd82d05b3954f3bc6b09098f | p23@FLT1 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr2:33519090..33519092,+#_9ad92169fd82d05b3954f3bc6b09098f | p@chr2:33519090..33519092, + |
| 3.4e-49 | FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_1bed47d0ec30050f811e40e463f20adb | p26@Myo18a |
| 3.4e-49 | FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_1bed47d0ec30050f811e40e463f20adb | p26@Myo18a |
| 4.96e-49 | FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_272bea4f947ac2c52d43ec6c6f50e806 | p@chr8:75097542..75097549, + |
| 4.96e-49 | FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_272bea4f947ac2c52d43ec6c6f50e806 | p@chr2:32482372..32482381, + |
| 4.96e-49 | FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_272bea4f947ac2c52d43ec6c6f50e806 | p@chr2:32482372..32482381, + |
| 4.96e-49 | FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_272bea4f947ac2c52d43ec6c6f50e806 | p@chr9:21934585..21934591, - |
| 4.96e-49 | FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_272bea4f947ac2c52d43ec6c6f50e806 | p@chr9:21934585..21934591, - |
| 4.96e-49 | FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_272bea4f947ac2c52d43ec6c6f50e806 | p@chr8:75097542..75097549, + |
| 3.15e-44 | FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_ca135afc4680b3f0bf21e567d1daefbc | p@chr6:51525810..51525817, + |
| 3.15e-44 | FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_ca135afc4680b3f0bf21e567d1daefbc | p@chr6:51525810..51525817, + |
| 6.62e-41 | FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_acb75afce4a90d297e0a7085c1613631 | p@chr8:57354143..57354152, + |
| 6.62e-41 | FFCP PHASE2:Hg19::chr8:57353779..57353790,-#_acb75afce4a90d297e0a7085c1613631 | p@chr8:57353779..57353790, - |
| 6.62e-41 | FFCP PHASE1:Hg19::chr8:57353779..57353790,-#_acb75afce4a90d297e0a7085c1613631 | p@chr8:57353779..57353790, - |
| 6.62e-41 | FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_acb75afce4a90d297e0a7085c1613631 | p@chr8:57354143..57354152, + |
| 6.62e-41 | FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_acb75afce4a90d297e0a7085c1613631 | p@chr8:57353666..57353675, - |
| 6.62e-41 | FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_acb75afce4a90d297e0a7085c1613631 | p@chr8:57353666..57353675, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr20:49253452..49253461,-#_2cf6a12954f7353e314f26ca3277bb1d | p12@FAM65C |
| 1.48e-40 | FFCP PHASE1:Hg19::chr20:49253452..49253461,-#_2cf6a12954f7353e314f26ca3277bb1d | p12@FAM65C |
| 1.48e-40 | FFCP PHASE2:Hg19::chr1:6615391..6615401,+#_2cf6a12954f7353e314f26ca3277bb1d | p2@TAS1R1 |
| 1.48e-40 | FFCP PHASE1:Hg19::chr1:6615391..6615401,+#_2cf6a12954f7353e314f26ca3277bb1d | p2@TAS1R1 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr1:75600308..75600316,+#_2cf6a12954f7353e314f26ca3277bb1d | p8@LHX8 |
| 1.48e-40 | FFCP PHASE1:Hg19::chr1:75600308..75600316,+#_2cf6a12954f7353e314f26ca3277bb1d | p8@LHX8 |
| 2.21e-40 | FFCP PHASE1:Hg19::chr16:67687543..67687559,-#_0e92d60c63e7c80b99c032d30cf880a4 | p@chr16:67687543..67687559, - |
| 2.21e-40 | FFCP PHASE2:Hg19::chr5:75912831..75912842,-#_0e92d60c63e7c80b99c032d30cf880a4 | p@chr5:75912831..75912842, - |
| 2.21e-40 | FFCP PHASE1:Hg19::chr5:75912831..75912842,-#_0e92d60c63e7c80b99c032d30cf880a4 | p@chr5:75912831..75912842, - |
| 2.21e-40 | FFCP PHASE2:Hg19::chr16:67687543..67687559,-#_0e92d60c63e7c80b99c032d30cf880a4 | p@chr16:67687543..67687559, - |
| 3.3e-40 | FFCP PHASE2:Hg19::chr9:125165007..125165016,+#_4cf92d3eb870506b7e9f08e354698737 | p@chr9:125165007..125165016, + |
| 3.3e-40 | FFCP PHASE1:Hg19::chr9:125165007..125165016,+#_4cf92d3eb870506b7e9f08e354698737 | p@chr9:125165007..125165016, + |
| 3.3e-40 | FFCP PHASE2:Hg19::chr6:46190219..46190230,-#_4cf92d3eb870506b7e9f08e354698737 | p@chr6:46190219..46190230, - |
| 3.3e-40 | FFCP PHASE1:Hg19::chr6:46190219..46190230,-#_4cf92d3eb870506b7e9f08e354698737 | p@chr6:46190219..46190230, - |
| 9.78e-40 | FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_33c3385048cf118c0d648ae911d97dea | p@chr19:4876870..4876880, - |
| 9.78e-40 | FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_33c3385048cf118c0d648ae911d97dea | p@chr19:4876870..4876880, - |
| 1.15e-39 | FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_e9337534b889ef68b395634fc8a55c2b | p@chr6:4490674..4490679, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_e9337534b889ef68b395634fc8a55c2b | p@chr11:67063327..67063335, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_e9337534b889ef68b395634fc8a55c2b | p@chr11:67063327..67063335, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_e9337534b889ef68b395634fc8a55c2b | p@chr6:4490674..4490679, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_e9337534b889ef68b395634fc8a55c2b | p@chr16:24096441..24096449, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_e9337534b889ef68b395634fc8a55c2b | p@chr1:174140324..174140335, - |
| 1.15e-39 | FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_e9337534b889ef68b395634fc8a55c2b | p@chr1:174140324..174140335, - |
| 1.15e-39 | FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_e9337534b889ef68b395634fc8a55c2b | p@chr16:24096441..24096449, + |
| 1.55e-39 | FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_d4f366fc53dfb99cd9b6dfc374d69c41 | p@chr1:174143249..174143260, - |
| 1.55e-39 | FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_d4f366fc53dfb99cd9b6dfc374d69c41 | p@chr1:174143249..174143260, - |
| 3.03e-39 | FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_897037edf0d784d7d1d0ae11a70692bd | p@chr6:51525869..51525891, + |
| 3.03e-39 | FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_897037edf0d784d7d1d0ae11a70692bd | p@chr6:51525869..51525891, + |
| 9.31e-39 | FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_044e6d7050ee2805f20b8d87bdfa827d | p3@Asb16 |
| 9.31e-39 | FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_044e6d7050ee2805f20b8d87bdfa827d | p3@Asb16 |
| 2.41e-35 | FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_fc93a779d55ca5699127e920bdad43c5 | p@chr7:133604286..133604297, - |
| 2.41e-35 | FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_fc93a779d55ca5699127e920bdad43c5 | p@chr7:133604286..133604297, - |
| 2.95e-35 | FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_b080f9c477c4d6b5782bec3587ec80a2 | p5@Pla2g5 |
| 2.95e-35 | FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_b080f9c477c4d6b5782bec3587ec80a2 | p5@Pla2g5 |
| 1.84e-34 | FFCP PHASE2:Hg19::chr8:57359557..57359570,-#_2980b43b1d26238154ed90865e39dbdd | p5@PENK |
| 1.84e-34 | FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_2980b43b1d26238154ed90865e39dbdd | p@chr10:15760985..15760992, - |
| 1.84e-34 | FFCP PHASE1:Hg19::chr8:57359557..57359570,-#_2980b43b1d26238154ed90865e39dbdd | p5@PENK |
| 1.84e-34 | FFCP PHASE2:Hg19::chr4:8594472..8594473,+#_2980b43b1d26238154ed90865e39dbdd | p4@CPZ |
| 1.84e-34 | FFCP PHASE1:Hg19::chr4:8594472..8594473,+#_2980b43b1d26238154ed90865e39dbdd | p4@CPZ |
| 1.84e-34 | FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_2980b43b1d26238154ed90865e39dbdd | p@chr10:15760985..15760992, - |
| 2.58e-34 | FFCP PHASE1:Hg19::chr14:61125018..61125037,-#_7faa7adcef287dce5ad94534dc810b93 | p9@SIX1 |
| 2.58e-34 | FFCP PHASE2:Hg19::chr14:61125018..61125037,-#_7faa7adcef287dce5ad94534dc810b93 | p9@SIX1 |
| 5.05e-34 | FFCP PHASE2:Hg19::chr6:134327986..134327991,-#_0176910b868671e121828f2c60bd518b | p@chr6:134327986..134327991, - |
| 5.05e-34 | FFCP PHASE1:Hg19::chr6:134327986..134327991,-#_0176910b868671e121828f2c60bd518b | p@chr6:134327986..134327991, - |
| 7.06e-34 | FFCP PHASE2:Hg19::chr13:58291223..58291226,+#_62fd4e8a6e835696d1a0a7ef15d091d9 | p@chr13:58291223..58291226, + |
| 7.06e-34 | FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_62fd4e8a6e835696d1a0a7ef15d091d9 | p@chr8:57353676..57353688, - |
| 7.06e-34 | FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_62fd4e8a6e835696d1a0a7ef15d091d9 | p@chr8:57353676..57353688, - |
| 7.06e-34 | FFCP PHASE1:Hg19::chr13:58291223..58291226,+#_62fd4e8a6e835696d1a0a7ef15d091d9 | p@chr13:58291223..58291226, + |
| 9.53e-34 | FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_9137eb4b1a96f25435bac9bff1dcd16a | p2@uc009mdq.1 |
| 9.53e-34 | FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_9137eb4b1a96f25435bac9bff1dcd16a | p2@uc009mdq.1 |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical cluster consisting of the skeletal elements that are part of the skeleton.[VSAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
