FFCP PHASE1:Hg19::chr16:55689970..55689985,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6530 | |EntrezGene=6530 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11048 | |HGNC=11048 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-36bp_to_uc002eif.2,uc010ccd.2_5end | |association_with_transcript=-36bp_to_uc002eif.2,uc010ccd.2_5end | ||
|cluster_id=chr16:55689970..55689985,+ | |||
|coexpression_cluster_id=C3572 | |coexpression_cluster_id=C3572 | ||
|description=CAGE_peak_4_at_SLC6A2_5end | |description=CAGE_peak_4_at_SLC6A2_5end | ||
|id=chr16:55689970..55689985,+ | |id=chr16:55689970..55689985,+ | ||
|ontology_enrichment_celltype=CL:0002541;1.04e-54;3!CL:0000349;1.39e-15;19!CL:0000307;2.79e-07;3 | |ontology_enrichment_celltype=CL:0002541!7.85e-13!3;CL:0000223!2.17e-07!59 | ||
| | |ontology_enrichment_celltype_v019=CL:0002541;1.04e-54;3!CL:0000349;1.39e-15;19!CL:0000307;2.79e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0002541,8.69e-55,3;CL:0000349,1.29e-15,19;CL:0000068,3.35e-07,3;CL:0000069,3.35e-07,3;CL:0000307,3.35e-07,3;CL:0000377,3.35e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0003124;1.30e-19;1!UBERON:0008801;3.25e-19;1!CL:0000377;2.79e-07;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0003124;1.04e-54;3!UBERON:0000920;1.04e-54;3!UBERON:0005631;3.40e-29;10!UBERON:0000158;3.40e-29;10!UBERON:0001831;3.25e-19;1!UBERON:0001567;3.25e-19;1!UBERON:0000478;5.84e-19;24!UBERON:0001829;2.72e-10;2!UBERON:0004089;2.72e-10;2 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000476!7.85e-13!3;UBERON:0000920!7.85e-13!3;UBERON:0003124!1.85e-09!7;UBERON:0004175!3.39e-08!25;UBERON:0005631!5.88e-07!14;UBERON:0000158!5.88e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0003124;1.04e-54;3!UBERON:0000920;1.04e-54;3!UBERON:0005631;3.40e-29;10!UBERON:0000158;3.40e-29;10!UBERON:0001831;3.25e-19;1!UBERON:0001567;3.25e-19;1!UBERON:0000478;5.84e-19;24!UBERON:0001829;2.72e-10;2!UBERON:0004089;2.72e-10;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000920,8.69e-55,3;UBERON:0003124,8.85e-42,7;UBERON:0005631,2.03e-32,14;UBERON:0000158,2.03e-32,14;UBERON:0001831,4.69e-19,1;UBERON:0001567,4.69e-19,1;UBERON:0008801,4.69e-19,1;UBERON:0000478,5.22e-19,24;UBERON:0001829,3.27e-10,2;UBERON:0004089,3.27e-10,2;UBERON:0004923,5.93e-07,66 | |||
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| ||
|short_description=p4@SLC6A2 | |short_description=p4@SLC6A2 | ||
}} | }} |
Latest revision as of 00:34, 17 September 2015
Short description: | p4@SLC6A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SLC6A2_5end |
Coexpression cluster: | C3572_neuroblastoma_placenta_chorionic_amniotic_epididymis_Urothelial_Placental |
Association with transcript: | -36bp_to_uc002eif.2, uc010ccd.2_5end |
EntrezGene: | SLC6A2 |
HGNC: | 11048 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 8.69e-55 | 3 |
extraembryonic cell | 1.29e-15 | 19 |
duct epithelial cell | 3.35e-07 | 3 |
branched duct epithelial cell | 3.35e-07 | 3 |
tracheal epithelial cell | 3.35e-07 | 3 |
tracheoblast | 3.35e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
egg chorion | 8.69e-55 | 3 |
chorion | 8.85e-42 | 7 |
extraembryonic membrane | 2.03e-32 | 14 |
membranous layer | 2.03e-32 | 14 |
parotid gland | 4.69e-19 | 1 |
cheek | 4.69e-19 | 1 |
parotid gland primordium | 4.69e-19 | 1 |
extraembryonic structure | 5.22e-19 | 24 |
major salivary gland | 3.27e-10 | 2 |
midface | 3.27e-10 | 2 |
organ component layer | 5.93e-07 | 66 |