FFCP PHASE1:Hg19::chr10:28367236..28367266,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr10:28367236..28367266,+ | |||
|coexpression_cluster_id=C429 | |coexpression_cluster_id=C429 | ||
|description=CAGE_peak_at_chr10:28367236..28367266,+ | |description=CAGE_peak_at_chr10:28367236..28367266,+ | ||
|id=chr10:28367236..28367266,+ | |id=chr10:28367236..28367266,+ | ||
|ontology_enrichment_celltype=CL:0002166;4.11e-14;3!CL:0002620;1.58e-11;23!CL:0002149;2.93e-07;6!CL:0002255;2.93e-07;6 | |ontology_enrichment_celltype=CL:0002620!8.42e-16!23;CL:0002166!3.00e-07!3 | ||
| | |ontology_enrichment_celltype_v019=CL:0002166;4.11e-14;3!CL:0002620;1.58e-11;23!CL:0002149;2.93e-07;6!CL:0002255;2.93e-07;6 | ||
|ontology_enrichment_disease=DOID:120;9.36e-21;27!DOID:193;3.78e-19;29!DOID:4468;8.98e-10;2!DOID:2394;1.43e-07;14!DOID:3001;2.93e-07;6 | |ontology_enrichment_celltype_v019_2=CL:0002166,4.12e-14,3;CL:0002620,1.69e-11,23;CL:0002149,2.49e-07,6;CL:0002255,2.49e-07,6 | ||
|ontology_enrichment_uberon=UBERON:0003134;9.62e-11;33!UBERON:0001708;1.06e-10;4!UBERON:0008895;1.06e-10;4!UBERON:0004175;2.88e-09;21!UBERON:0000474;5.39e-09;37!UBERON:0000995;9.53e-09;17!UBERON:0011159;1.20e-08;5!UBERON:0003975;3.16e-08;18!UBERON:0003133;2.92e-07;44!UBERON:0003100;3.48e-07;41!UBERON:0001723;4.66e-07;3!UBERON:0001033;4.66e-07;3 | |ontology_enrichment_development_v019=UBERON:0005795;2.75e-07;10 | ||
|ontology_enrichment_disease=DOID:120!1.24e-13!27;DOID:193!2.12e-12!29 | |||
|ontology_enrichment_disease_v019=DOID:120;9.36e-21;27!DOID:193;3.78e-19;29!DOID:4468;8.98e-10;2!DOID:2394;1.43e-07;14!DOID:3001;2.93e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:120,6.46e-21,27;DOID:193,2.68e-19,29;DOID:4468,6.58e-10,2;DOID:2394,1.19e-07,14;DOID:3001,2.49e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0005156!4.34e-12!59;UBERON:0000990!4.34e-12!59;UBERON:0003102!2.26e-11!95;UBERON:0002097!8.39e-10!40;UBERON:0001557!9.26e-10!19;UBERON:0003064!1.29e-09!37;UBERON:0001737!3.46e-09!9;UBERON:0001708!1.23e-08!4;UBERON:0001704!1.23e-08!4;UBERON:0005795!1.57e-08!22;UBERON:0000162!1.72e-08!14;UBERON:0001353!1.72e-08!14;UBERON:0000163!1.72e-08!14;UBERON:0006866!1.72e-08!14;UBERON:0000164!1.72e-08!14;UBERON:0000931!1.72e-08!14;UBERON:0003134!1.78e-08!37;UBERON:0000474!1.78e-08!37;UBERON:0003937!2.92e-08!12;UBERON:0005399!2.92e-08!12;UBERON:0002199!3.14e-08!45;UBERON:0002416!3.14e-08!45;UBERON:0002090!4.19e-08!6;UBERON:0004122!8.23e-08!15;UBERON:0003133!1.28e-07!48;UBERON:0000995!2.02e-07!21;UBERON:0006554!2.19e-07!44;UBERON:0003100!2.76e-07!41;UBERON:0004175!3.20e-07!25;UBERON:0001008!3.90e-07!45;UBERON:0003975!5.53e-07!22;UBERON:0000161!6.46e-07!35;UBERON:0002367!6.68e-07!11;UBERON:0010147!6.68e-07!11;UBERON:0009846!6.68e-07!11;UBERON:0003353!6.68e-07!11;UBERON:0004902!6.68e-07!11;UBERON:0003820!6.68e-07!11;UBERON:0009847!6.68e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0003134;9.62e-11;33!UBERON:0001708;1.06e-10;4!UBERON:0008895;1.06e-10;4!UBERON:0004175;2.88e-09;21!UBERON:0000474;5.39e-09;37!UBERON:0000995;9.53e-09;17!UBERON:0011159;1.20e-08;5!UBERON:0003975;3.16e-08;18!UBERON:0003133;2.92e-07;44!UBERON:0003100;3.48e-07;41!UBERON:0001723;4.66e-07;3!UBERON:0001033;4.66e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0008814,2.03e-11,18;UBERON:0001708,1.06e-10,4;UBERON:0008895,1.06e-10,4;UBERON:0003134,6.34e-10,37;UBERON:0000474,6.34e-10,37;UBERON:0003100,8.90e-09,41;UBERON:0003133,9.31e-09,48;UBERON:0011159,1.20e-08,5;UBERON:0005156,4.44e-08,59;UBERON:0000990,4.44e-08,59;UBERON:0003102,6.11e-08,99;UBERON:0004175,1.32e-07,25;UBERON:0002097,2.21e-07,41;UBERON:0010188,2.84e-07,6;UBERON:0002539,2.84e-07,6;UBERON:0008816,2.84e-07,6;UBERON:0001723,5.02e-07,3;UBERON:0001033,5.02e-07,3;UBERON:0010056,5.02e-07,3;UBERON:0000995,5.97e-07,21 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.436882744260345,0.263766978228454,0.123766352960047,0,0.672325146451775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0.221729397462564,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234321431833797,0,0,0,0.117434498643765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.40840307808838,0,0.211931901159562,2.70081986475962,0.412210116953756,14.1702297025096,5.3973888336161,0.506328996723799,0.0974370051611986,2.77677151668526,0.736399189138395,0,7.10019185033229,5.64211750074785,5.4259389539356,0.386521706326594,0,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0.828147600278907,1.68584690078102,0,0.661763836394364,0.217879444092406,0.237270619111097,0.539325232640658,0,0.38474715694639,0,0,0,0,0,0,0,0,0,0,0.219500570817251,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.62403003920662,5.54341023056236,1.41775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0.542621605391443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,1.04260337361699,0,0,0,0,0,0.303127571446259,0,0,0.248107807818777,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0,0.802025881213139,0.0920809889358963,0.114814448164607,0.546273504020151,0.131124414959424,0.451199612907412,0.0770153371044148,0,0,1.58327443339314,0,0,0.215915916102139,0,0,1.00337954770971,0,0,0.671624264166535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272999822815972,0,0,0,0,0.438450885253763,0,0,0.202910376962704,0,0,0,0.196498082026242,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,95.1689427945845,0,0,0,0,0,16.6697952478512,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.23077990845765,0.615602068030377,9.5711326911481,0,0,0,0.638002319463839,0,0,0,0,0,0,0,0,0,0,2.95397290339238,2.93819054686466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.554698692052555,0,0,1.30588809870604,0,0,0,0,0,0.581934098930517,0,0,0,1.78843150532691,0,0,0.480952921509202,0,0,0,0,0,0,2.73355578243952,0,74.2036965161933,81.5902201236199,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.28611152076586,4.7892076624995,0,1.36310417428337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75226443880073,0,4.81315166316404,0,0,3.1304703708704,0,0.380805212168795,0.813741466409323,0,1.8259794697223,0,2.78667122089031,0,0,0,0,0,0,0,0,0,1.71315693154527,0,0,0,0,0,0,0,0.345430341731199,0,0,0,0,0,0,0.491545817507439,0,0,0,0,0.567515953566836,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352675943690684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21023041222112,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0,0,0,1.66847102838104,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,1.27016115057279,2.97838929107265,5.58371494195776,2.8666168169323,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.849635573439084,0,0,0,0,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.75731751132648,0,0,0.0620747142958579,1.79410980128981,0,0,3.04803447055746,5.4757328173645,2.02056159043763,0,0,0.569822880276821,0,0,0,0,0.122241444182866,0.813792356631477,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.436882744260345,0.263766978228454,0.123766352960047,0,0.672325146451775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0.221729397462564,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234321431833797,0,0,0,0.117434498643765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.40840307808838,0,0.211931901159562,2.70081986475962,0.412210116953756,14.1702297025096,5.3973888336161,0.506328996723799,0.0974370051611986,2.77677151668526,0.736399189138395,0,7.10019185033229,5.64211750074785,5.4259389539356,0.386521706326594,0,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0.828147600278907,1.68584690078102,0,0.661763836394364,0.217879444092406,0.237270619111097,0.539325232640658,0,0.38474715694639,0,0,0,0,0,0,0,0,0,0,0.219500570817251,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.62403003920662,5.54341023056236,1.41775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0.542621605391443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,1.04260337361699,0,0,0,0,0,0.303127571446259,0,0,0.248107807818777,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0,0.802025881213139,0.0920809889358963,0.114814448164607,0.546273504020151,0.131124414959424,0.451199612907412,0.0770153371044148,0,0,1.58327443339314,0,0,0.215915916102139,0,0,1.00337954770971,0,0,0.671624264166535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272999822815972,0,0,0,0,0.438450885253763,0,0,0.202910376962704,0,0,0,0.196498082026242,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,95.1689427945845,0,0,0,0,0,16.6697952478512,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.23077990845765,0.615602068030377,9.5711326911481,0,0,0,0.638002319463839,0,0,0,0,0,0,0,0,0,0,2.95397290339238,2.93819054686466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.554698692052555,0,0,1.30588809870604,0,0,0,0,0,0.581934098930517,0,0,0,1.78843150532691,0,0,0.480952921509202,0,0,0,0,0,0,2.73355578243952,0,74.2036965161933,81.5902201236199,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.28611152076586,4.7892076624995,0,1.36310417428337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75226443880073,0,4.81315166316404,0,0,3.1304703708704,0,0.380805212168795,0.813741466409323,0,1.8259794697223,0,2.78667122089031,0,0,0,0,0,0,0,0,0,1.71315693154527,0,0,0,0,0,0,0,0.345430341731199,0,0,0,0,0,0,0.491545817507439,0,0,0,0,0.567515953566836,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352675943690684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21023041222112,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0,0,0,1.66847102838104,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,1.27016115057279,2.97838929107265,5.58371494195776,2.8666168169323,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.849635573439084,0,0,0,0,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.75731751132648,0,0,0.0620747142958579,1.79410980128981,0,0,3.04803447055746,5.4757328173645,2.02056159043763,0,0,0.569822880276821,0,0,0,0,0.122241444182866,0.813792356631477,0,0,0 | ||
|short_description=p@chr10:28367236..28367266,+ | |short_description=p@chr10:28367236..28367266,+ | ||
}} | }} |
Latest revision as of 12:57, 23 July 2015
Short description: | p@chr10:28367236..28367266, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr10:28367236..28367266, + |
Coexpression cluster: | C429_anaplastic_Mast_clear_Neutrophils_squamous_Eosinophils_oral |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of Malassez | 4.12e-14 | 3 |
skin fibroblast | 1.69e-11 | 23 |
epithelial cell of uterus | 2.49e-07 | 6 |
stromal cell of endometrium | 2.49e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
pharyngeal arch system | 2.03e-11 | 18 |
jaw skeleton | 1.06e-10 | 4 |
splanchnocranium | 1.06e-10 | 4 |
female reproductive organ | 6.34e-10 | 37 |
female reproductive system | 6.34e-10 | 37 |
female organism | 8.90e-09 | 41 |
reproductive organ | 9.31e-09 | 48 |
primary subdivision of cranial skeletal system | 1.20e-08 | 5 |
reproductive structure | 4.44e-08 | 59 |
reproductive system | 4.44e-08 | 59 |
surface structure | 6.11e-08 | 99 |
internal genitalia | 1.32e-07 | 25 |
skin of body | 2.21e-07 | 41 |
protuberance | 2.84e-07 | 6 |
pharyngeal arch | 2.84e-07 | 6 |
embryonic head | 2.84e-07 | 6 |
tongue | 5.02e-07 | 3 |
gustatory system | 5.02e-07 | 3 |
future tongue | 5.02e-07 | 3 |
uterus | 5.97e-07 | 21 |
Ontology term | p-value | n |
---|---|---|
female reproductive organ cancer | 6.46e-21 | 27 |
reproductive organ cancer | 2.68e-19 | 29 |
clear cell adenocarcinoma | 6.58e-10 | 2 |
ovarian cancer | 1.19e-07 | 14 |
female reproductive endometrioid cancer | 2.49e-07 | 6 |