FFCP PHASE1:Hg19::chr19:35739897..35739920,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=51599 | |EntrezGene=51599 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29572 | |HGNC=29572 | ||
|TSSclassifier=strong | |||
|UniProt=B4DKL4 | |UniProt=B4DKL4 | ||
|association_with_transcript=0bp_to_ENST00000427250_5end | |association_with_transcript=0bp_to_ENST00000427250_5end | ||
|cluster_id=chr19:35739897..35739920,+ | |||
|coexpression_cluster_id=C1817 | |coexpression_cluster_id=C1817 | ||
|description=CAGE_peak_1_at_LSR_5end | |description=CAGE_peak_1_at_LSR_5end | ||
|id=chr19:35739897..35739920,+ | |id=chr19:35739897..35739920,+ | ||
|ontology_enrichment_celltype=CL:0002076;3.11e-11;42!CL:0002251;5.20e-07;20 | |ontology_enrichment_celltype=CL:0000066!1.55e-29!254;CL:0000223!9.81e-15!59;CL:0002076!3.47e-13!43 | ||
| | |ontology_enrichment_celltype_v019=CL:0002076;3.11e-11;42!CL:0002251;5.20e-07;20 | ||
|ontology_enrichment_disease=DOID:299;1.54e-09;25!DOID:1749;1.90e-09;14!DOID:305;4.94e-09;106 | |ontology_enrichment_celltype_v019_2=CL:0000066,1.10e-29,253;CL:0000223,3.78e-16,58;CL:0002076,2.37e-14,42;CL:0002251,5.00e-07,20 | ||
|ontology_enrichment_uberon=UBERON:0006554;5.65e-10;30!UBERON:0001008;5.65e-10;30!UBERON:0000489;1.17e-07;29!UBERON:0002113;2.43e-07;24!UBERON:0011143;2.43e-07;24 | |ontology_enrichment_development_v019=CL:0000223;3.18e-09;58 | ||
|ontology_enrichment_disease=DOID:305!5.46e-26!106;DOID:0050687!2.77e-16!143;DOID:299!7.06e-10!25;DOID:1749!3.90e-09!14 | |||
|ontology_enrichment_disease_v019=DOID:299;1.54e-09;25!DOID:1749;1.90e-09;14!DOID:305;4.94e-09;106 | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.77e-26,106;DOID:0050687,1.24e-16,143;DOID:299,1.53e-09,25;DOID:1749,1.89e-09,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!3.88e-16!169;UBERON:0000925!3.88e-16!169;UBERON:0006595!3.88e-16!169;UBERON:0005177!2.02e-13!107;UBERON:0004921!1.00e-12!129;UBERON:0004185!1.00e-12!129;UBERON:0001007!1.32e-12!155;UBERON:0001555!1.32e-12!155;UBERON:0007026!1.32e-12!155;UBERON:0000077!8.72e-12!130;UBERON:0000466!1.65e-10!126;UBERON:0001041!6.82e-10!98;UBERON:0005911!1.86e-09!82;UBERON:0005172!2.60e-09!55;UBERON:0005173!2.60e-09!55;UBERON:0001008!4.48e-09!45;UBERON:0006554!5.98e-09!44;UBERON:0007023!6.30e-09!115;UBERON:0000464!1.25e-08!104;UBERON:0009569!4.69e-08!113;UBERON:0000062!6.22e-08!511;UBERON:0000064!1.14e-07!219;UBERON:0000489!1.48e-07!32;UBERON:0002113!3.16e-07!27;UBERON:0003918!3.16e-07!27;UBERON:0005095!3.16e-07!27;UBERON:0007687!3.16e-07!27;UBERON:0001004!3.36e-07!72;UBERON:0005153!8.77e-07!37 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;5.65e-10;30!UBERON:0001008;5.65e-10;30!UBERON:0000489;1.17e-07;29!UBERON:0002113;2.43e-07;24!UBERON:0011143;2.43e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,2.20e-16,160;UBERON:0000925,2.20e-16,160;UBERON:0006595,2.20e-16,160;UBERON:0005177,8.75e-16,101;UBERON:0004921,1.03e-13,118;UBERON:0001007,5.62e-13,145;UBERON:0001555,5.62e-13,145;UBERON:0007026,5.62e-13,145;UBERON:0001008,2.22e-11,48;UBERON:0006554,2.98e-11,47;UBERON:0001041,1.18e-10,87;UBERON:0005172,2.39e-10,54;UBERON:0005173,2.39e-10,54;UBERON:0005911,4.69e-10,82;UBERON:0007023,2.35e-09,114;UBERON:0009569,2.59e-09,112;UBERON:0000489,3.21e-08,31;UBERON:0002113,6.43e-08,26;UBERON:0003918,6.43e-08,26;UBERON:0011143,6.43e-08,26;UBERON:0005095,6.43e-08,26;UBERON:0007687,6.43e-08,26;UBERON:0002417,1.54e-07,60;UBERON:0000916,1.54e-07,60;UBERON:0001004,4.35e-07,74;UBERON:0011216,6.03e-07,223;UBERON:0005153,7.89e-07,37 | |||
|phase1_expression=0,0,0,0,0,0.872338524100369,0,0,0,166.11614107502,757.812068418056,146.574160699346,180.944147064719,0,0,0,0,0.730310090387373,0,0,0,0,0,0.410623275218653,0.125542639594803,38.8944235257072,44.0059159451709,40.7721847204858,3.93364276848904,0.383829398097213,8.05043841243595,180.20655999787,217.169467439118,189.683807215562,12.9370224969104,11.5157078314811,3.52320527201817,1.10799081706375,4.01088894940283,6.72733699219141,1.79132379391939,2.59114932815184,0,1.01778767145695,1.13362783106643,0.485168122375632,1.16214518452842,1.23350366406548,1.54853185447552,0.863077176966451,2.56160706529101,0.47296445977717,1.37898272294647,2.5819387343353,0,0.188242339542605,2.18324920046277,0,0.612167784741805,1.60464513538047,0.639337125799041,0.989553900560148,0.199463657621632,0,0.290209238628584,5.10646702222026,1.24564449799115,1.00499466102697,3.12889751052121,0.868755378820466,13.9241885605675,2.94622108790052,1.26584954976354,0,0,0,0,0,0,0,0,0,19.3595868907455,16.3841583378639,9.7846017924991,9.38806489646316,9.6095036888643,16.66782075868,21.8144808019005,18.1270213361719,33.014352208348,51.0896354752717,39.3741424968986,7.93027971474155,6.1655941927969,0.790152254325231,25.965689655026,43.2311839024081,60.2412392068562,26.4154662717271,65.1844533267181,74.8047533060879,75.9824240790854,14.8175907657281,35.3527088969805,39.4330332358846,21.3935052374362,35.9936608429147,35.7663205789665,2.13769275984779,1.93445012450094,1.15921234294021,16.7563816373128,18.1927763101005,30.3153019034433,1.69964014046349,14.562378756873,20.2740192834752,16.4462799812677,17.2025323735012,22.7879208849746,22.810849066761,14.0034860742329,12.6706745042874,16.240994451805,15.6272986349051,27.9183518953156,48.3856183739358,60.9763646386397,60.1021276113616,0,0,0.639312809217652,0,0,0,0,3.40644409211845,3.78139268656271,2.4390233720882,5.18225235589444,42.4372204612589,225.863078741376,181.68437696437,1.9472843619281,1.56716763569341,3.32394901297163,0.953962497221368,0,1.11437250398869,0,0,0,0,0,0,0,0,0,0,0.805658634218294,0,0.24406205754817,0,0,0,0,0,0,0,0,1.31780417436063,0,168.768398179161,0,0,0,0,2.83734705758686,3.36406560085384,0,0.24666754841716,0,0,0,0.151357427644931,0,0,0,3.4228309292667,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0.150238058906597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,172.775202727987,131.736376245373,206.786113275472,144.416868057441,139.818905579167,137.341240471771,121.076112257953,160.223740306024,121.902437931327,0,0,0,0,0,6.03364680203204,4.04603256187444,6.50729780685401,7.61028411853518,7.40790109914181,5.93176547777742,6.20224017536756,7.84885860501384,6.54070166808864,0,0,6.5851841813024,0,455.050575010373,204.428061068946,243.99623145942,0,229.127461005821,1.3725424823882,163.527925258852,155.114419495515,136.81993145223,85.7369002167984,0,0,0,13.3319965721338,0.117408694235822,0,0,0.190254152234598,286.844196459217,296.177725922731,0.246217006087397,0.468008530278475,1.18904929830983,103.107217385455,172.853609916626,121.643033433968,129.591182351021,108.697093004222,290.220688128065,0.492663237895943,3.16974362447614,39.5996700682875,52.7479029506079,53.4005493393587,0.253991577168676,0.381988425558278,0,6.84289784090821,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602878754119172,0.871533458600294,10.6971100564801,6.08118903205952,2.00902836572851,2.10833939483032,0,0,0,0,0,0,0,17.7327684181734,21.3471299110922,19.1231124056825,0.254094624222463,0,0,0,0,0,0,0.414415513436035,0,0.500170521059677,0,0,0,0,0,0,0,13.4514992680256,0,0.368738337083406,0,0,0,15.3008339330937,17.6885644671266,21.7724217919026,153.9888062947,178.085920276232,201.996715944226,0,0,0,0,0,0,2.96836132889982,0,0,0,0,0,240.752023586511,294.744511345829,157.182248113575,0,0,0.655622074797121,211.612618453576,122.685432007333,186.675245064092,160.753147118587,94.3631562302309,4.54933536283586,0.340187410553031,3.02282282542995,13.880452742126,47.1446801326304,138.46637758394,163.37569102187,231.870206491114,108.579256040256,0,0,14.6176571316342,35.4255817355682,48.8067591996455,144.154375295163,0,0,133.803870353108,172.265965199678,0,0,0,0,0,0,0,0.255679882248303,0,143.797876364051,175.661721571707,72.3564079844292,210.307026398688,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438450885253763,0,0,0,0.92947049429925,0,0,0,0,0,0,0,0,0,96.1258906127865,167.575568883947,227.582158360164,146.017035004784,232.042395869793,208.904629827856,324.590872388847,151.617444136593,9.64150457541122,5.35246044999663,7.97506062043828,8.81457569193819,9.87269455406866,3.8908398671563,6.48037724685738,10.3106272918255,64.3080908187388,79.8858279868588,572.904024963652,0,0,0,0,0,0,0,0,0,0,0,2.50634477090067,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,253.949713333954,8.64398257704175,124.7586163585,0,0,252.591664852476,137.494647225512,199.9616170666,2.98244294329889,6.18945432206256,0.111308705022906,0,127.941997325564,22.5150226723709,75.1492250244722,64.4947834506947,21.2718859604482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| ||
|short_description=p1@LSR | |short_description=p1@LSR | ||
}} | }} |
Latest revision as of 10:58, 17 September 2015
Short description: | p1@LSR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LSR_5end |
Coexpression cluster: | C1817_Alveolar_smallcell_acantholytic_Hepatocyte_squamous_liver_mesothelioma |
Association with transcript: | 0bp_to_ENST00000427250_5end |
EntrezGene: | LSR |
HGNC: | 29572 |
UniProt: | B4DKL4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.10e-29 | 253 |
endodermal cell | 3.78e-16 | 58 |
endo-epithelial cell | 2.37e-14 | 42 |
epithelial cell of alimentary canal | 5.00e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 2.20e-16 | 160 |
endoderm | 2.20e-16 | 160 |
presumptive endoderm | 2.20e-16 | 160 |
trunk region element | 8.75e-16 | 101 |
subdivision of digestive tract | 1.03e-13 | 118 |
digestive system | 5.62e-13 | 145 |
digestive tract | 5.62e-13 | 145 |
primitive gut | 5.62e-13 | 145 |
renal system | 2.22e-11 | 48 |
urinary system structure | 2.98e-11 | 47 |
foregut | 1.18e-10 | 87 |
abdomen element | 2.39e-10 | 54 |
abdominal segment element | 2.39e-10 | 54 |
endo-epithelium | 4.69e-10 | 82 |
adult organism | 2.35e-09 | 114 |
subdivision of trunk | 2.59e-09 | 112 |
cavitated compound organ | 3.21e-08 | 31 |
kidney | 6.43e-08 | 26 |
kidney mesenchyme | 6.43e-08 | 26 |
upper urinary tract | 6.43e-08 | 26 |
kidney rudiment | 6.43e-08 | 26 |
kidney field | 6.43e-08 | 26 |
abdominal segment of trunk | 1.54e-07 | 60 |
abdomen | 1.54e-07 | 60 |
respiratory system | 4.35e-07 | 74 |
organ system subdivision | 6.03e-07 | 223 |
epithelial bud | 7.89e-07 | 37 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.77e-26 | 106 |
cell type cancer | 1.24e-16 | 143 |
adenocarcinoma | 1.53e-09 | 25 |
squamous cell carcinoma | 1.89e-09 | 14 |