FFCP PHASE1:Hg19::chr1:173174630..173174644,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
|||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7292 | |EntrezGene=7292 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11934 | |HGNC=11934 | ||
|TSSclassifier=strong | |||
|UniProt=Q8IV74 | |UniProt=Q8IV74 | ||
|association_with_transcript=-18bp_to_ENST00000545292_5end | |association_with_transcript=-18bp_to_ENST00000545292_5end | ||
|cluster_id=chr1:173174630..173174644,- | |||
|coexpression_cluster_id=C725 | |coexpression_cluster_id=C725 | ||
|description=CAGE_peak_7_at_TNFSF4_5end | |description=CAGE_peak_7_at_TNFSF4_5end | ||
|id=chr1:173174630..173174644,- | |id=chr1:173174630..173174644,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!7.20e-08!14 | |ontology_enrichment_disease=DOID:2394!7.20e-08!14 | ||
|ontology_enrichment_disease_v019=DOID:2394;1.64e-10;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.67e-10,14 | |||
|ontology_enrichment_uberon=UBERON:0004535!1.63e-17!110;UBERON:0000178!5.53e-17!15;UBERON:0000179!5.53e-17!15;UBERON:0000463!5.53e-17!15;UBERON:0001009!1.13e-16!113;UBERON:0001981!4.68e-11!60;UBERON:0007500!4.68e-11!60;UBERON:0004537!4.68e-11!60;UBERON:0006965!4.68e-11!60;UBERON:0004872!8.43e-11!84;UBERON:0000055!2.59e-10!69;UBERON:0001637!1.12e-09!42;UBERON:0003509!1.12e-09!42;UBERON:0004572!1.12e-09!42;UBERON:0002049!7.52e-09!79;UBERON:0007798!7.52e-09!79;UBERON:0000490!1.98e-08!138;UBERON:0003914!2.90e-07!118;UBERON:0003081!4.58e-07!216;UBERON:0002066!6.98e-07!5 | |ontology_enrichment_uberon=UBERON:0004535!1.63e-17!110;UBERON:0000178!5.53e-17!15;UBERON:0000179!5.53e-17!15;UBERON:0000463!5.53e-17!15;UBERON:0001009!1.13e-16!113;UBERON:0001981!4.68e-11!60;UBERON:0007500!4.68e-11!60;UBERON:0004537!4.68e-11!60;UBERON:0006965!4.68e-11!60;UBERON:0004872!8.43e-11!84;UBERON:0000055!2.59e-10!69;UBERON:0001637!1.12e-09!42;UBERON:0003509!1.12e-09!42;UBERON:0004572!1.12e-09!42;UBERON:0002049!7.52e-09!79;UBERON:0007798!7.52e-09!79;UBERON:0000490!1.98e-08!138;UBERON:0003914!2.90e-07!118;UBERON:0003081!4.58e-07!216;UBERON:0002066!6.98e-07!5 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.73e-35;15!UBERON:0000179;4.73e-35;15!UBERON:0000463;4.73e-35;15!UBERON:0002390;2.88e-17;32!UBERON:0002193;1.91e-08;42!UBERON:0002331;9.47e-08;10!UBERON:0000991;8.27e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,3.97e-35,15;UBERON:0000179,3.97e-35,15;UBERON:0000463,3.97e-35,15;UBERON:0004535,6.41e-08,109;UBERON:0002331,9.31e-08,10;UBERON:0000358,9.31e-08,10;UBERON:0000307,9.31e-08,10;UBERON:0000091,9.31e-08,10;UBERON:0000087,9.31e-08,10;UBERON:0007010,9.31e-08,10;UBERON:0007806,9.31e-08,10;UBERON:0008780,9.31e-08,10;UBERON:0005728,9.31e-08,10;UBERON:0001009,1.31e-07,112;UBERON:0000991,7.91e-07,21;UBERON:0009196,7.91e-07,21;UBERON:0009117,7.91e-07,21;UBERON:0005564,7.91e-07,21 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.737201809504527,0,0,0,0,0,0,0,0,0.487932798790507,0,0,0,0,0,0,0,0,0,0.786728553697808,0.383829398097213,0,0,0,0,0,0,2.34880351467878,0,0,0,0,0,0,0,0,0,0.232429036905685,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.800791974072025,0,0,0,0,0,0,0,0.560508562981536,1.05353633910031,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0.476981248610684,0,0,1.59009925893364,0,0.694281003215189,0.56530794192401,0.419499436209906,0,1.46296476575767,0.258416759169329,0.35576626268671,0,0,0,0,0.735326160691737,0,0.446498641420399,0.22452937262617,0.112611480483322,0,0,0,0,0,0,0,0.633152558322899,1.98613771219828,0.286836620748814,0.354668382198357,0,0,0,0,0.67355336034844,0.490385709340376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.81491493056034,2.15267562826634,6.83383644219416,0.211931901159562,0,0.412210116953756,0.515281080091258,3.16398655763703,0,0.0974370051611986,0,0.828449087780694,0,0,1.41052937518696,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0,0,0.290633938513962,0,11.3312544716067,0.088048434013226,0,0,0,0,0,0,0,0,0,0,0,0,0,6.85140093516222,0,0,1.86156681609409,1.04007436911366,0,0,0,0,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0.749007023947182,5.9832291840805,0.828831026872071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0,0.106727557803444,0,0,0,0,0.153461973288062,0,0,0.511707249066704,0,0,0,0,0.0821271560138091,0,0,0,0,0,0.34444334449382,0.364182336013434,0,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.21367859688319,0.193341436584244,0,0,0,0,0,0.0852266274161009,0,0,0,0.127612712494584,0,0,0,0.6970372701606,0,0,0,0.18532421910392,0.858749320451947,0,0,1.14378116354295,0,0,0,0,0.359744915166629,0,0.235624804691373,0.202182481573316,0,0,0,0.243713489631284,0,0,0.141405431953713,0,0,0.66343897524122,0,0.578775534266688,0.655894752046633,0.202910376962704,0,0.281695602532241,1.14729081763241,0.491245205065606,0.35667105148125,0,0,0,0,0,0,0,0,0,0,0,0,0,4.56702848308952,3.0585488285695,2.84823593587081,4.52640373369799,4.11362273086194,3.8908398671563,5.40031437238115,1.58625035258854,0,0,0,0,0.144269212976445,0,0.159426272728822,0.798317485731266,0.766021480529467,2.32840940996271,0,0,0.228234679033192,0,0,0.169291777801603,0,0,0,1.37402137902306,0,0,0,0.390776190804081,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.445234820091624,0,0,0,0,0,0,0,2.48831670129446,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.824378340616761,0,0,0.470940769185074,0,0,0,0,0,0,0,0,0,0,0,0,0,6.22694370229306,5.06612149680662,3.86361213170185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.98989253361951,2.92887969674533,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0.0671834724867263,4.32359860250884,0,0.472699093843342,0.329663433524666,0.202210631562555,0,0.254019996197353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.314408610199332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303298235083296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11507737014592,0,1.24210365501008,0.414706207840855,3.19010057469594,0,0.601030435988874,1.52322084867518,2.44122439922797,0,0.537052785212442,0,1.99047944349308,3.20022211730523,0,0,0,0.192619830407303,0,0,0,0.231522474323834,0,0.358177682162975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.954013051960256,1.49837315502381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18332000730565,2.55640214277473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150962843566674,0,0,0,0,0,0,0,0,0,0.0939839179798536,0.257831551894309,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606229585745915,1.60778478093707,0,0,0,0,0,0,0.224263725161227,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.737201809504527,0,0,0,0,0,0,0,0,0.487932798790507,0,0,0,0,0,0,0,0,0,0.786728553697808,0.383829398097213,0,0,0,0,0,0,2.34880351467878,0,0,0,0,0,0,0,0,0,0.232429036905685,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.800791974072025,0,0,0,0,0,0,0,0.560508562981536,1.05353633910031,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0.476981248610684,0,0,1.59009925893364,0,0.694281003215189,0.56530794192401,0.419499436209906,0,1.46296476575767,0.258416759169329,0.35576626268671,0,0,0,0,0.735326160691737,0,0.446498641420399,0.22452937262617,0.112611480483322,0,0,0,0,0,0,0,0.633152558322899,1.98613771219828,0.286836620748814,0.354668382198357,0,0,0,0,0.67355336034844,0.490385709340376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.81491493056034,2.15267562826634,6.83383644219416,0.211931901159562,0,0.412210116953756,0.515281080091258,3.16398655763703,0,0.0974370051611986,0,0.828449087780694,0,0,1.41052937518696,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0,0,0.290633938513962,0,11.3312544716067,0.088048434013226,0,0,0,0,0,0,0,0,0,0,0,0,0,6.85140093516222,0,0,1.86156681609409,1.04007436911366,0,0,0,0,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0.749007023947182,5.9832291840805,0.828831026872071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0,0.106727557803444,0,0,0,0,0.153461973288062,0,0,0.511707249066704,0,0,0,0,0.0821271560138091,0,0,0,0,0,0.34444334449382,0.364182336013434,0,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.21367859688319,0.193341436584244,0,0,0,0,0,0.0852266274161009,0,0,0,0.127612712494584,0,0,0,0.6970372701606,0,0,0,0.18532421910392,0.858749320451947,0,0,1.14378116354295,0,0,0,0,0.359744915166629,0,0.235624804691373,0.202182481573316,0,0,0,0.243713489631284,0,0,0.141405431953713,0,0,0.66343897524122,0,0.578775534266688,0.655894752046633,0.202910376962704,0,0.281695602532241,1.14729081763241,0.491245205065606,0.35667105148125,0,0,0,0,0,0,0,0,0,0,0,0,0,4.56702848308952,3.0585488285695,2.84823593587081,4.52640373369799,4.11362273086194,3.8908398671563,5.40031437238115,1.58625035258854,0,0,0,0,0.144269212976445,0,0.159426272728822,0.798317485731266,0.766021480529467,2.32840940996271,0,0,0.228234679033192,0,0,0.169291777801603,0,0,0,1.37402137902306,0,0,0,0.390776190804081,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.445234820091624,0,0,0,0,0,0,0,2.48831670129446,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.824378340616761,0,0,0.470940769185074,0,0,0,0,0,0,0,0,0,0,0,0,0,6.22694370229306,5.06612149680662,3.86361213170185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.98989253361951,2.92887969674533,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0.0671834724867263,4.32359860250884,0,0.472699093843342,0.329663433524666,0.202210631562555,0,0.254019996197353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.314408610199332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303298235083296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11507737014592,0,1.24210365501008,0.414706207840855,3.19010057469594,0,0.601030435988874,1.52322084867518,2.44122439922797,0,0.537052785212442,0,1.99047944349308,3.20022211730523,0,0,0,0.192619830407303,0,0,0,0.231522474323834,0,0.358177682162975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.954013051960256,1.49837315502381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18332000730565,2.55640214277473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150962843566674,0,0,0,0,0,0,0,0,0,0.0939839179798536,0.257831551894309,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606229585745915,1.60778478093707,0,0,0,0,0,0,0.224263725161227,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p7@TNFSF4 | |short_description=p7@TNFSF4 | ||
}} | }} |
Latest revision as of 17:24, 18 September 2015
Short description: | p7@TNFSF4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_TNFSF4_5end |
Coexpression cluster: | C725_Mast_cord_mycosis_mesenchymal_Endothelial_hepatic_Mesenchymal |
Association with transcript: | -18bp_to_ENST00000545292_5end |
EntrezGene: | TNFSF4 |
HGNC: | 11934 |
UniProt: | Q8IV74 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
blood | 3.97e-35 | 15 |
haemolymphatic fluid | 3.97e-35 | 15 |
organism substance | 3.97e-35 | 15 |
cardiovascular system | 6.41e-08 | 109 |
umbilical cord | 9.31e-08 | 10 |
blastocyst | 9.31e-08 | 10 |
blastula | 9.31e-08 | 10 |
bilaminar disc | 9.31e-08 | 10 |
inner cell mass | 9.31e-08 | 10 |
cleaving embryo | 9.31e-08 | 10 |
connecting stalk | 9.31e-08 | 10 |
inner cell mass derived epiblast | 9.31e-08 | 10 |
extraembryonic mesoderm | 9.31e-08 | 10 |
circulatory system | 1.31e-07 | 112 |
gonad | 7.91e-07 | 21 |
indifferent external genitalia | 7.91e-07 | 21 |
indifferent gonad | 7.91e-07 | 21 |
gonad primordium | 7.91e-07 | 21 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.67e-10 | 14 |