FFCP PHASE1:Hg19::chr1:203148408..203148431,+: Difference between revisions
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|id=chr1:203148408..203148431,+
|short_description=p2@CU678996
|description=CAGE_peak_2_at_CU678996_5end
|association_with_transcript=-142bp_to_CU678996_5end
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-142bp_to_CU678996_5end | |||
|cluster_id=chr1:203148408..203148431,+ | |||
|coexpression_cluster_id=C283 | |||
|description=CAGE_peak_2_at_CU678996_5end | |||
|id=chr1:203148408..203148431,+ | |||
|ontology_enrichment_celltype=CL:0000153!3.37e-15!9;CL:0000447!3.37e-15!9;CL:0000667!5.10e-12!6;CL:0000058!5.10e-12!6;CL:0000138!5.10e-12!6;CL:0000499!1.78e-10!27;CL:0000135!2.05e-09!3;CL:0000386!2.05e-09!3;CL:0000388!2.05e-09!3;CL:0000327!2.56e-09!14 | |||
|ontology_enrichment_celltype_v019=CL:0000153;1.22e-34;9!CL:0000447;1.22e-34;9!CL:0000138;2.15e-23;6!CL:0000327;1.19e-20;15!CL:0000499;3.37e-19;28!CL:0002540;7.31e-14;6!CL:0000235;8.51e-14;6!CL:0000135;4.34e-13;3!CL:0000388;4.34e-13;3!CL:0000214;5.51e-13;3!CL:0000182;9.79e-12;12!CL:0002092;1.60e-08;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000153,1.18e-34,9;CL:0000447,1.18e-34,9;CL:0000058,2.09e-23,6;CL:0000138,2.09e-23,6;CL:0000327,1.17e-20,15;CL:0000499,3.33e-19,28;CL:0002540,7.00e-14,6;CL:0000235,9.09e-14,6;CL:0000135,4.34e-13,3;CL:0000388,4.34e-13,3;CL:0000214,5.51e-13,3;CL:0000182,9.39e-12,12;CL:0002092,1.56e-08,10;CL:0000151,2.40e-08,36;CL:0000134,1.62e-07,354;CL:0002320,2.66e-07,361 | |||
|ontology_enrichment_development_v019=UBERON:0010115;9.40e-10;1!UBERON:0004161;1.11e-07;11 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:5662;2.97e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:5662,2.84e-10,1 | |||
|ontology_enrichment_uberon=UBERON:0000043!2.05e-09!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0007846;4.34e-13;3!UBERON:0000043;4.34e-13;3!UBERON:0007845;4.34e-13;3!UBERON:0006915;5.51e-13;3!UBERON:0007616;5.51e-13;3!UBERON:0002217;5.51e-13;3!UBERON:0002018;5.51e-13;3!UBERON:0002107;3.50e-11;19!UBERON:0006925;3.50e-11;19!UBERON:0001282;3.40e-10;1!UBERON:0009842;3.40e-10;1!UBERON:0003704;3.40e-10;1!UBERON:0001171;3.40e-10;1!UBERON:0001172;3.40e-10;1!UBERON:0002363;9.40e-10;1!UBERON:0002423;1.83e-08;25!UBERON:0002371;3.53e-07;12!UBERON:0002365;8.59e-07;31!UBERON:0002330;8.59e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007846,4.34e-13,3;UBERON:0000043,4.34e-13,3;UBERON:0007845,4.34e-13,3;UBERON:0006915,5.51e-13,3;UBERON:0007616,5.51e-13,3;UBERON:0002217,5.51e-13,3;UBERON:0002018,5.51e-13,3;UBERON:0002107,3.42e-11,19;UBERON:0006925,3.42e-11,19;UBERON:0008836,3.42e-11,19;UBERON:0001282,3.40e-10,1;UBERON:0009842,3.40e-10,1;UBERON:0003704,3.40e-10,1;UBERON:0001171,3.40e-10,1;UBERON:0001172,3.40e-10,1;UBERON:0002363,8.24e-10,1;UBERON:0007645,8.24e-10,1;UBERON:0007647,8.24e-10,1;UBERON:0010115,8.24e-10,1;UBERON:0008835,1.20e-09,22;UBERON:0003894,1.20e-09,22;UBERON:0009854,3.20e-09,23;UBERON:0007499,1.80e-08,25;UBERON:0009497,1.80e-08,25;UBERON:0000015,1.80e-08,25;UBERON:0002423,1.80e-08,25;UBERON:0006235,1.80e-08,25;UBERON:0004161,1.80e-08,25;UBERON:0009856,3.88e-08,26;UBERON:0002384,5.21e-07,371;UBERON:0002365,8.51e-07,31;UBERON:0002330,8.51e-07,31 | |||
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| ||
|short_description=p2@CU678996 | |||
}} | }} |
Latest revision as of 02:23, 28 July 2015
Short description: | p2@CU678996 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CU678996_5end |
Coexpression cluster: | C283_tenocyte_Chondrocyte_mesenchymal_Macrophage_pleomorphic_Synoviocyte_cholangiocellular |
Association with transcript: | -142bp_to_CU678996_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 1.18e-34 | 9 |
carbohydrate secreting cell | 1.18e-34 | 9 |
chondroblast | 2.09e-23 | 6 |
chondrocyte | 2.09e-23 | 6 |
extracellular matrix secreting cell | 1.17e-20 | 15 |
stromal cell | 3.33e-19 | 28 |
mesenchymal stem cell of the bone marrow | 7.00e-14 | 6 |
macrophage | 9.09e-14 | 6 |
fibrocyte | 4.34e-13 | 3 |
tendon cell | 4.34e-13 | 3 |
synovial cell | 5.51e-13 | 3 |
hepatocyte | 9.39e-12 | 12 |
bone marrow cell | 1.56e-08 | 10 |
secretory cell | 2.40e-08 | 36 |
mesenchymal cell | 1.62e-07 | 354 |
connective tissue cell | 2.66e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
dense regular connective tissue | 4.34e-13 | 3 |
tendon | 4.34e-13 | 3 |
regular connective tissue | 4.34e-13 | 3 |
stratified squamous epithelium | 5.51e-13 | 3 |
layer of synovial tissue | 5.51e-13 | 3 |
synovial joint | 5.51e-13 | 3 |
synovial membrane of synovial joint | 5.51e-13 | 3 |
liver | 3.42e-11 | 19 |
digestive gland | 3.42e-11 | 19 |
liver bud | 3.42e-11 | 19 |
intralobular bile duct | 3.40e-10 | 1 |
acinus | 3.40e-10 | 1 |
intrahepatic bile duct | 3.40e-10 | 1 |
portal lobule | 3.40e-10 | 1 |
hepatic acinus | 3.40e-10 | 1 |
dura mater | 8.24e-10 | 1 |
future meninx | 8.24e-10 | 1 |
ectomeninx | 8.24e-10 | 1 |
future dura mater | 8.24e-10 | 1 |
hepatic diverticulum | 1.20e-09 | 22 |
liver primordium | 1.20e-09 | 22 |
digestive tract diverticulum | 3.20e-09 | 23 |
epithelial sac | 1.80e-08 | 25 |
epithelium of foregut-midgut junction | 1.80e-08 | 25 |
anatomical boundary | 1.80e-08 | 25 |
hepatobiliary system | 1.80e-08 | 25 |
foregut-midgut junction | 1.80e-08 | 25 |
septum transversum | 1.80e-08 | 25 |
sac | 3.88e-08 | 26 |
connective tissue | 5.21e-07 | 371 |
exocrine gland | 8.51e-07 | 31 |
exocrine system | 8.51e-07 | 31 |
Ontology term | p-value | n |
---|---|---|
pleomorphic carcinoma | 2.84e-10 | 1 |