FFCP PHASE1:Hg19::chr1:209603797..209603808,+: Difference between revisions
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|id=chr1:209603797..209603808,+
|short_description=p1@AK002208
|description=CAGE_peak_1_at_AK002208_5end
|association_with_transcript=-222bp_to_AK002208_5end
|Entr...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-222bp_to_AK002208_5end | |||
|cluster_id=chr1:209603797..209603808,+ | |||
|coexpression_cluster_id=C2561 | |||
|description=CAGE_peak_1_at_AK002208_5end | |||
|id=chr1:209603797..209603808,+ | |||
|ontology_enrichment_celltype=CL:0002076!2.89e-37!43;CL:0000223!4.12e-25!59;CL:0002368!9.93e-21!13;CL:0000066!2.65e-20!254;CL:0002251!7.64e-19!21;CL:0000622!1.91e-14!5;CL:0002159!8.77e-13!13;CL:0000154!5.78e-12!6;CL:0000244!7.98e-12!4;CL:0000731!7.98e-12!4;CL:0002202!2.68e-11!9;CL:0002632!2.68e-11!9;CL:0002328!1.11e-09!3;CL:0000068!2.12e-09!3;CL:0000069!2.12e-09!3;CL:0000307!2.12e-09!3;CL:0000377!2.12e-09!3;CL:0002077!2.18e-09!33;CL:0002623!2.50e-09!3;CL:0002166!5.54e-09!3;CL:0002321!1.42e-08!248;CL:0000076!1.96e-08!62;CL:0000220!4.17e-08!246;CL:0000150!7.99e-08!9;CL:0000317!8.60e-07!2;CL:1000448!8.60e-07!2;CL:0002308!8.60e-07!2;CL:0002140!8.60e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0002368;4.35e-24;13!CL:0000307;1.33e-17;3!CL:0000244;3.02e-13;4!CL:0000731;3.02e-13;4!CL:0002202;3.37e-13;9!CL:0002632;3.37e-13;9!CL:0002076;2.14e-12;42!CL:0000622;6.63e-11;5!CL:0000154;3.08e-09;6!CL:0002159;1.74e-08;14!CL:0000317;1.87e-07;2!CL:1000448;1.87e-07;2!CL:0002308;1.87e-07;2!CL:0000575;1.87e-07;2!CL:0002140;1.87e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002368,4.91e-24,13;CL:0002076,2.24e-18,42;CL:0000068,1.64e-17,3;CL:0000069,1.64e-17,3;CL:0000307,1.64e-17,3;CL:0000377,1.64e-17,3;CL:0000244,3.21e-13,4;CL:0000731,3.21e-13,4;CL:0002202,3.74e-13,9;CL:0002632,3.74e-13,9;CL:0000223,4.30e-13,58;CL:0000622,5.29e-11,5;CL:0000154,2.56e-09,6;CL:0000066,2.70e-09,253;CL:0002159,1.66e-08,14;CL:0000317,1.45e-07,2;CL:1000448,1.45e-07,2;CL:0002308,1.45e-07,2;CL:0002140,1.45e-07,2;CL:0000575,1.64e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000377;1.33e-17;3!CL:0000223;3.18e-10;58 | |||
|ontology_enrichment_disease=DOID:1749!8.85e-21!14 | |||
|ontology_enrichment_disease_v019=DOID:3151;6.23e-14;1!DOID:3149;6.23e-14;1!DOID:3451;1.32e-07;2!DOID:4159;1.32e-07;2!DOID:0060122;1.32e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,6.65e-14,1;DOID:3149,6.65e-14,1;DOID:3451,1.36e-07,2;DOID:4159,1.36e-07,2;DOID:0060122,1.36e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0003729!2.35e-13!5;UBERON:0000166!2.95e-13!21;UBERON:0001004!6.24e-13!72;UBERON:0000165!3.00e-11!28;UBERON:0000930!3.00e-11!28;UBERON:0003343!6.51e-11!4;UBERON:0004785!6.51e-11!4;UBERON:0004119!1.37e-10!169;UBERON:0000925!1.37e-10!169;UBERON:0006595!1.37e-10!169;UBERON:0000161!3.27e-10!35;UBERON:0004815!1.11e-09!3;UBERON:0002031!1.11e-09!3;UBERON:0000365!1.90e-09!5;UBERON:0001723!2.39e-08!3;UBERON:0001033!2.39e-08!3;UBERON:0010056!2.39e-08!3;UBERON:0005910!7.33e-08!6;UBERON:0002185!2.47e-07!4;UBERON:0000065!3.88e-07!53;UBERON:0007196!5.83e-07!14;UBERON:0001558!5.83e-07!14;UBERON:0001708!8.07e-07!4;UBERON:0001704!8.07e-07!4;UBERON:0002419!8.60e-07!2;UBERON:0007771!8.60e-07!2;UBERON:0003297!8.60e-07!2;UBERON:0001821!8.60e-07!2;UBERON:0003487!8.60e-07!2;UBERON:0001820!8.60e-07!2;UBERON:0005089!8.60e-07!2;UBERON:0005088!8.60e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0000365;8.71e-11;5!UBERON:0005910;3.86e-09;6!UBERON:0007196;3.87e-08;15!UBERON:0001558;3.87e-08;15!UBERON:0003126;4.50e-08;7!UBERON:0001005;4.50e-08;7!UBERON:0002419;1.87e-07;2!UBERON:0007771;1.87e-07;2!UBERON:0003297;1.87e-07;2!UBERON:0001821;1.87e-07;2!UBERON:0003487;1.87e-07;2!UBERON:0001820;1.87e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000365,9.16e-11,5;UBERON:0005910,4.03e-09,6;UBERON:0007196,4.12e-08,15;UBERON:0001558,4.12e-08,15;UBERON:0003126,4.92e-08,7;UBERON:0001005,4.92e-08,7;UBERON:0001004,9.54e-08,74;UBERON:0002419,1.45e-07,2;UBERON:0007771,1.45e-07,2;UBERON:0003297,1.45e-07,2;UBERON:0001821,1.45e-07,2;UBERON:0003487,1.45e-07,2;UBERON:0001820,1.45e-07,2;UBERON:0005089,1.45e-07,2;UBERON:0005088,1.45e-07,2 | |||
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| ||
|short_description=p1@AK002208 | |||
}} | }} |
Latest revision as of 03:18, 28 July 2015
Short description: | p1@AK002208 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_AK002208_5end |
Coexpression cluster: | C2561_Prostate_Small_salivary_oral_Bronchial_nasal_squamous |
Association with transcript: | -222bp_to_AK002208_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory epithelial cell | 4.91e-24 | 13 |
endo-epithelial cell | 2.24e-18 | 42 |
duct epithelial cell | 1.64e-17 | 3 |
branched duct epithelial cell | 1.64e-17 | 3 |
tracheal epithelial cell | 1.64e-17 | 3 |
tracheoblast | 1.64e-17 | 3 |
transitional epithelial cell | 3.21e-13 | 4 |
urothelial cell | 3.21e-13 | 4 |
epithelial cell of tracheobronchial tree | 3.74e-13 | 9 |
epithelial cell of lower respiratory tract | 3.74e-13 | 9 |
endodermal cell | 4.30e-13 | 58 |
acinar cell | 5.29e-11 | 5 |
protein secreting cell | 2.56e-09 | 6 |
epithelial cell | 2.70e-09 | 253 |
general ecto-epithelial cell | 1.66e-08 | 14 |
sebum secreting cell | 1.45e-07 | 2 |
epithelial cell of sweat gland | 1.45e-07 | 2 |
epithelial cell of skin gland | 1.45e-07 | 2 |
acinar cell of sebaceous gland | 1.45e-07 | 2 |
corneal epithelial cell | 1.64e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
urothelium | 9.16e-11 | 5 |
transitional epithelium | 4.03e-09 | 6 |
tracheobronchial tree | 4.12e-08 | 15 |
lower respiratory tract | 4.12e-08 | 15 |
trachea | 4.92e-08 | 7 |
respiratory airway | 4.92e-08 | 7 |
respiratory system | 9.54e-08 | 74 |
skin gland | 1.45e-07 | 2 |
epidermis gland | 1.45e-07 | 2 |
gland of integumental system | 1.45e-07 | 2 |
sebaceous gland | 1.45e-07 | 2 |
skin sebaceous gland | 1.45e-07 | 2 |
sweat gland | 1.45e-07 | 2 |
sweat gland placode | 1.45e-07 | 2 |
sebaceous gland placode | 1.45e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 6.65e-14 | 1 |
keratoacanthoma | 6.65e-14 | 1 |
skin carcinoma | 1.36e-07 | 2 |
skin cancer | 1.36e-07 | 2 |
integumentary system cancer | 1.36e-07 | 2 |