FFCP PHASE1:Hg19::chr3:82040169..82040171,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:82040169..82040171,+ | |||
|coexpression_cluster_id=C4346 | |coexpression_cluster_id=C4346 | ||
|description=CAGE_peak_at_chr3:82040169..82040171,+ | |description=CAGE_peak_at_chr3:82040169..82040171,+ | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000039!1.29e-17!7;CL:0000586!1.29e-17!7;CL:0000181!1.66e-10!12;CL:0000417!1.66e-10!12;CL:0000668!1.66e-10!12;CL:0000414!1.66e-10!12;CL:0000412!1.66e-10!12;CL:0000182!1.66e-10!12 | |ontology_enrichment_celltype=CL:0000039!1.29e-17!7;CL:0000586!1.29e-17!7;CL:0000181!1.66e-10!12;CL:0000417!1.66e-10!12;CL:0000668!1.66e-10!12;CL:0000414!1.66e-10!12;CL:0000412!1.66e-10!12;CL:0000182!1.66e-10!12 | ||
|ontology_enrichment_celltype_v019=CL:0000039;4.66e-26;7!CL:0000586;4.66e-26;7!CL:0000182;1.61e-15;12 | |ontology_enrichment_celltype_v019=CL:0000039;4.66e-26;7!CL:0000586;4.66e-26;7!CL:0000182;1.61e-15;12 | ||
|ontology_enrichment_celltype_v019_2=CL:0000039,5.78e-26,7;CL:0000586,5.78e-26,7;CL:0000182,1.29e-15,12 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.78e-18;10!UBERON:0005564;1.78e-18;10!UBERON:0004161;7.28e-17;11!UBERON:0009497;2.22e-14;13 | |ontology_enrichment_development_v019=UBERON:0009117;1.78e-18;10!UBERON:0005564;1.78e-18;10!UBERON:0004161;7.28e-17;11!UBERON:0009497;2.22e-14;13 | ||
|ontology_enrichment_disease=DOID:3095!5.10e-13!22;DOID:2994!5.10e-13!22 | |ontology_enrichment_disease=DOID:3095!5.10e-13!22;DOID:2994!5.10e-13!22 | ||
|ontology_enrichment_disease_v019=DOID:3095;9.30e-09;22!DOID:2994;9.30e-09;22 | |ontology_enrichment_disease_v019=DOID:3095;9.30e-09;22!DOID:2994;9.30e-09;22 | ||
|ontology_enrichment_disease_v019_2=DOID:3095,9.94e-09,22;DOID:2994,9.94e-09,22 | |||
|ontology_enrichment_uberon=UBERON:0000473!6.67e-22!8;UBERON:0003135!9.08e-16!11;UBERON:0000991!5.86e-08!21;UBERON:0009196!5.86e-08!21;UBERON:0009117!5.86e-08!21;UBERON:0005564!5.86e-08!21;UBERON:0004176!1.44e-07!22;UBERON:0003101!1.44e-07!22;UBERON:0000079!1.44e-07!22 | |ontology_enrichment_uberon=UBERON:0000473!6.67e-22!8;UBERON:0003135!9.08e-16!11;UBERON:0000991!5.86e-08!21;UBERON:0009196!5.86e-08!21;UBERON:0009117!5.86e-08!21;UBERON:0005564!5.86e-08!21;UBERON:0004176!1.44e-07!22;UBERON:0003101!1.44e-07!22;UBERON:0000079!1.44e-07!22 | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;6.67e-23;8!UBERON:0003135;7.28e-17;11!UBERON:0002107;4.80e-10;19!UBERON:0006925;4.80e-10;19!UBERON:0000991;3.80e-09;21!UBERON:0003101;9.30e-09;22!UBERON:0000079;9.30e-09;22!UBERON:0002423;8.92e-08;25 | |ontology_enrichment_uberon_v019=UBERON:0000473;6.67e-23;8!UBERON:0003135;7.28e-17;11!UBERON:0002107;4.80e-10;19!UBERON:0006925;4.80e-10;19!UBERON:0000991;3.80e-09;21!UBERON:0003101;9.30e-09;22!UBERON:0000079;9.30e-09;22!UBERON:0002423;8.92e-08;25 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,8.05e-23,8;UBERON:0003135,8.34e-17,11;UBERON:0002107,4.17e-10,19;UBERON:0006925,4.17e-10,19;UBERON:0008836,4.17e-10,19;UBERON:0000991,4.08e-09,21;UBERON:0009196,4.08e-09,21;UBERON:0009117,4.08e-09,21;UBERON:0005564,4.08e-09,21;UBERON:0008835,8.25e-09,22;UBERON:0003894,8.25e-09,22;UBERON:0004176,9.94e-09,22;UBERON:0003101,9.94e-09,22;UBERON:0000079,9.94e-09,22;UBERON:0009854,1.88e-08,23;UBERON:0007499,8.03e-08,25;UBERON:0009497,8.03e-08,25;UBERON:0000015,8.03e-08,25;UBERON:0002423,8.03e-08,25;UBERON:0006235,8.03e-08,25;UBERON:0004161,8.03e-08,25;UBERON:0009856,1.53e-07,26 | |||
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|short_description=p@chr3:82040169..82040171,+ | |short_description=p@chr3:82040169..82040171,+ | ||
}} | }} |
Latest revision as of 23:44, 29 July 2015
Short description: | p@chr3:82040169..82040171, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:82040169..82040171, + |
Coexpression cluster: | C4346_testicular_acute_hepatocellular_cholangiocellular_hepatoblastoma_teratocarcinoma_gastric |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 5.78e-26 | 7 |
germ cell | 5.78e-26 | 7 |
hepatocyte | 1.29e-15 | 12 |
Ontology term | p-value | n |
---|---|---|
testis | 8.05e-23 | 8 |
male reproductive organ | 8.34e-17 | 11 |
liver | 4.17e-10 | 19 |
digestive gland | 4.17e-10 | 19 |
liver bud | 4.17e-10 | 19 |
gonad | 4.08e-09 | 21 |
indifferent external genitalia | 4.08e-09 | 21 |
indifferent gonad | 4.08e-09 | 21 |
gonad primordium | 4.08e-09 | 21 |
hepatic diverticulum | 8.25e-09 | 22 |
liver primordium | 8.25e-09 | 22 |
external genitalia | 9.94e-09 | 22 |
male organism | 9.94e-09 | 22 |
male reproductive system | 9.94e-09 | 22 |
digestive tract diverticulum | 1.88e-08 | 23 |
epithelial sac | 8.03e-08 | 25 |
epithelium of foregut-midgut junction | 8.03e-08 | 25 |
anatomical boundary | 8.03e-08 | 25 |
hepatobiliary system | 8.03e-08 | 25 |
foregut-midgut junction | 8.03e-08 | 25 |
septum transversum | 8.03e-08 | 25 |
sac | 1.53e-07 | 26 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 9.94e-09 | 22 |
germ cell cancer | 9.94e-09 | 22 |