FFCP PHASE1:Hg19::chr11:9797238..9797249,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-28bp_to_ENST00000534671_5end | |association_with_transcript=-28bp_to_ENST00000534671_5end | ||
|cluster_id=chr11:9797238..9797249,+ | |||
|coexpression_cluster_id=C3214 | |coexpression_cluster_id=C3214 | ||
|description=CAGE_peak_1_at_ENST00000534671_5end | |description=CAGE_peak_1_at_ENST00000534671_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002537!3.26e-09!5;CL:0000055!5.78e-09!180 | |ontology_enrichment_celltype=CL:0002537!3.26e-09!5;CL:0000055!5.78e-09!180 | ||
|ontology_enrichment_celltype_v019=CL:0002537;3.46e-24;5!CL:0002622;3.31e-15;3!CL:0000197;7.87e-13;6!CL:0000098;7.87e-13;6!CL:0002167;7.87e-13;6!CL:0000349;2.03e-11;19!CL:1000487;1.64e-10;2 | |ontology_enrichment_celltype_v019=CL:0002537;3.46e-24;5!CL:0002622;3.31e-15;3!CL:0000197;7.87e-13;6!CL:0000098;7.87e-13;6!CL:0002167;7.87e-13;6!CL:0000349;2.03e-11;19!CL:1000487;1.64e-10;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0002537,2.80e-24,5;CL:0002622,3.57e-15,3;CL:0000197,8.51e-13,6;CL:0000098,8.51e-13,6;CL:0002167,8.51e-13,6;CL:0000349,2.20e-11,19;CL:1000487,1.17e-10,2 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004871!1.21e-07!8 | |ontology_enrichment_uberon=UBERON:0004871!1.21e-07!8 | ||
|ontology_enrichment_uberon_v019=UBERON:0000305;3.24e-17;7!UBERON:0005631;7.04e-17;10!UBERON:0000158;7.04e-17;10!UBERON:0002367;9.29e-11;11!UBERON:0010147;9.29e-11;11!UBERON:0003937;7.74e-10;12!UBERON:0005399;7.74e-10;12!UBERON:0000478;7.65e-09;24!UBERON:0003101;3.29e-07;22!UBERON:0000079;3.29e-07;22 | |ontology_enrichment_uberon_v019=UBERON:0000305;3.24e-17;7!UBERON:0005631;7.04e-17;10!UBERON:0000158;7.04e-17;10!UBERON:0002367;9.29e-11;11!UBERON:0010147;9.29e-11;11!UBERON:0003937;7.74e-10;12!UBERON:0005399;7.74e-10;12!UBERON:0000478;7.65e-09;24!UBERON:0003101;3.29e-07;22!UBERON:0000079;3.29e-07;22 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004871,3.49e-21,8;UBERON:0000305,2.79e-17,7;UBERON:0005631,7.02e-12,14;UBERON:0000158,7.02e-12,14;UBERON:0004122,6.16e-11,15;UBERON:0002367,8.30e-11,11;UBERON:0010147,8.30e-11,11;UBERON:0009846,8.30e-11,11;UBERON:0003353,8.30e-11,11;UBERON:0004902,8.30e-11,11;UBERON:0003820,8.30e-11,11;UBERON:0009847,8.30e-11,11;UBERON:0003937,6.98e-10,12;UBERON:0005399,6.98e-10,12;UBERON:0000478,8.15e-09,24;UBERON:0000162,1.99e-08,14;UBERON:0001353,1.99e-08,14;UBERON:0000163,1.99e-08,14;UBERON:0006866,1.99e-08,14;UBERON:0000164,1.99e-08,14;UBERON:0000931,1.99e-08,14;UBERON:0003101,2.95e-07,22;UBERON:0000079,2.95e-07,22 | |||
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| ||
|short_description=p1@ENST00000534671 | |short_description=p1@ENST00000534671 | ||
}} | }} |
Latest revision as of 03:51, 24 July 2015
Short description: | p1@ENST00000534671 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ENST00000534671_5end |
Coexpression cluster: | C3214_oral_normal_Mesenchymal_Fibroblast_extraskeletal_Smooth_cervical |
Association with transcript: | -28bp_to_ENST00000534671_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
amnion mesenchymal stem cell | 2.80e-24 | 5 |
prostate stromal cell | 3.57e-15 | 3 |
receptor cell | 8.51e-13 | 6 |
sensory epithelial cell | 8.51e-13 | 6 |
olfactory epithelial cell | 8.51e-13 | 6 |
extraembryonic cell | 2.20e-11 | 19 |
smooth muscle cell of prostate | 1.17e-10 | 2 |
Ontology term | p-value | n |
---|---|---|
somatic layer of lateral plate mesoderm | 3.49e-21 | 8 |
amnion | 2.79e-17 | 7 |
extraembryonic membrane | 7.02e-12 | 14 |
membranous layer | 7.02e-12 | 14 |
genitourinary system | 6.16e-11 | 15 |
prostate gland | 8.30e-11 | 11 |
male accessory sex gland | 8.30e-11 | 11 |
embryonic cloacal epithelium | 8.30e-11 | 11 |
epithelium of hindgut | 8.30e-11 | 11 |
urogenital sinus epithelium | 8.30e-11 | 11 |
prostate bud | 8.30e-11 | 11 |
prostate field | 8.30e-11 | 11 |
sex gland | 6.98e-10 | 12 |
male reproductive gland | 6.98e-10 | 12 |
extraembryonic structure | 8.15e-09 | 24 |
cloaca | 1.99e-08 | 14 |
anal region | 1.99e-08 | 14 |
embryonic cloaca | 1.99e-08 | 14 |
terminal part of digestive tract | 1.99e-08 | 14 |
primitive urogenital sinus | 1.99e-08 | 14 |
proctodeum | 1.99e-08 | 14 |
male organism | 2.95e-07 | 22 |
male reproductive system | 2.95e-07 | 22 |