FFCP PHASE1:Hg19::chr1:31886653..31886721,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:31886653..31886721,+
|short_description=p2@SERINC2
|description=CAGE_peak_2_at_SERINC2_5end
|association_with_transcript=0bp_to_ENST00000491976,ENST0000053...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=347735 | |EntrezGene=347735 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23231 | |HGNC=23231 | ||
|TSSclassifier=strong | |||
|UniProt=B4DJK5,Q96IM8,Q96SA4,B7ZAP2 | |UniProt=B4DJK5,Q96IM8,Q96SA4,B7ZAP2 | ||
|association_with_transcript=0bp_to_ENST00000491976,ENST00000536384,NM_001199039,NM_018565,uc010ogh.1_5end | |||
|cluster_id=chr1:31886653..31886721,+ | |||
|description=CAGE_peak_2_at_SERINC2_5end | |||
|id=chr1:31886653..31886721,+ | |||
|ontology_enrichment_celltype=CL:0000066!4.58e-13!254;CL:0002076!5.82e-11!43;CL:0000223!1.97e-10!59;CL:0000057!2.62e-09!75;CL:0000220!3.71e-08!246;CL:0002321!8.42e-08!248;CL:0002368!1.57e-07!13;CL:0000055!5.76e-07!180 | |||
|ontology_enrichment_celltype_v019=CL:0002368;2.63e-11;13!CL:0002076;3.23e-11;42!CL:0002251;5.00e-07;20!CL:0002202;6.88e-07;9!CL:0002632;6.88e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.09e-14,42;CL:0000223,4.28e-13,58;CL:0002368,1.62e-11,13;CL:0000066,1.15e-10,253;CL:0002251,4.20e-07,20;CL:0002202,4.43e-07,9;CL:0002632,4.43e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000223;8.34e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1749;7.35e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,6.81e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.66e-21!169;UBERON:0000925!2.66e-21!169;UBERON:0006595!2.66e-21!169;UBERON:0003102!6.67e-21!95;UBERON:0001007!2.59e-17!155;UBERON:0001555!2.59e-17!155;UBERON:0007026!2.59e-17!155;UBERON:0000475!2.06e-16!365;UBERON:0001444!8.57e-16!48;UBERON:0000467!2.49e-14!625;UBERON:0000161!2.67e-14!35;UBERON:0000480!3.90e-14!626;UBERON:0000468!4.50e-14!659;UBERON:0001004!1.06e-13!72;UBERON:0000165!1.37e-13!28;UBERON:0000930!1.37e-13!28;UBERON:0003104!5.75e-13!238;UBERON:0009142!5.75e-13!238;UBERON:0000481!1.39e-11!347;UBERON:0002100!2.07e-11!216;UBERON:0004921!5.96e-11!129;UBERON:0004185!5.96e-11!129;UBERON:0000077!6.29e-11!130;UBERON:0000166!1.52e-10!21;UBERON:0005256!1.91e-09!143;UBERON:0002050!2.63e-09!605;UBERON:0005423!2.63e-09!605;UBERON:0000923!3.36e-09!604;UBERON:0005291!3.36e-09!604;UBERON:0006598!3.36e-09!604;UBERON:0002532!3.36e-09!604;UBERON:0000922!4.01e-09!612;UBERON:0005085!2.65e-07!29;UBERON:0001008!8.20e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0000165;3.45e-16;28!UBERON:0000161;1.15e-13;19!UBERON:0000166;1.15e-13;19!UBERON:0003729;1.07e-10;13!UBERON:0001555;2.89e-09;54!UBERON:0007811;2.97e-09;52!UBERON:0001444;3.15e-09;48!UBERON:0000033;1.95e-08;50!UBERON:0002365;3.87e-08;31!UBERON:0002330;3.87e-08;31!UBERON:0000344;5.41e-08;20!UBERON:0001828;7.66e-08;8!UBERON:0000153;1.25e-07;54!UBERON:0007196;1.74e-07;15!UBERON:0001558;1.74e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,9.01e-19,160;UBERON:0000925,9.01e-19,160;UBERON:0006595,9.01e-19,160;UBERON:0003102,1.62e-18,99;UBERON:0000165,3.82e-15,29;UBERON:0000930,3.82e-15,29;UBERON:0001007,3.23e-14,145;UBERON:0001555,3.23e-14,145;UBERON:0007026,3.23e-14,145;UBERON:0000161,3.91e-14,36;UBERON:0001444,5.44e-13,49;UBERON:0000033,5.29e-11,56;UBERON:0000166,5.98e-11,22;UBERON:0003729,1.25e-10,13;UBERON:0001004,4.54e-10,74;UBERON:0000153,8.57e-10,62;UBERON:0007811,8.57e-10,62;UBERON:0004921,2.31e-08,118;UBERON:0002365,4.79e-08,31;UBERON:0002330,4.79e-08,31;UBERON:0000344,6.25e-08,20;UBERON:0001828,9.08e-08,8;UBERON:0007196,1.16e-07,15;UBERON:0001558,1.16e-07,15;UBERON:0002100,7.11e-07,199 | |||
|phase1_expression=1.2717486548939,0.214100523890983,2.53717927372748,0,0,3.48935409640147,2.53299878168311,2.52687949370732,0,1.96587149201207,4.18680700783456,0.655324116390517,0.791300934685361,0.74259811776028,0.662794751455832,1.34465029290355,0.602694528023977,1.46062018077475,0.975865597581014,0,0.612002073732759,0.940364164434263,0,0,0,0,0,0,0.393364276848904,0,0.154816123316076,3.67768489791571,3.614471025339,2.58827807116751,0.0774672005803016,0,0,0,0,0.217010870715852,0,0,0,0.581592955118259,1.13362783106643,0.485168122375632,0.697287110717054,0.411167888021826,0.619412741790207,0,0,0,0,0,0,0.564727018627814,1.63743690034707,0.449446968890169,0.306083892370903,1.28371610830437,0.639337125799041,0,0.199463657621632,0.852449501065388,0.290209238628584,0.56738522469114,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434539556882471,0,0.486634870302636,0.661743720148475,1.10864698731282,0.263504357079378,0.523916301990851,8.37879163072847,5.19098219898201,0,0,0,0,0,0.371457501329565,0.198762407366705,1.72046919021225,0,0.56530794192401,0.838998872419812,0.550236083880135,0,0.258416759169329,0,1.00416183829401,3.22263453687318,3.80136052859256,0.976248230192678,0,0.81014194788176,0,0,0.112611480483322,0,0.949265659568129,0.549605231791222,0,0,11.3384453557059,0.496971951695318,0.12663051166458,1.72131935057184,0.573673241497627,0.354668382198357,0,0,0,0,0.134710672069688,0,0.302714855289863,0,1.64025002283658,6.86752169026705,0.570471821544449,0.597794722207204,0.587172493218824,0.647491777472526,0.421352420106746,7.14539599392126,7.49289335601785,4.44300859055791,1.18800285728205,1.23633464639278,5.46096817162816,2.87447256726495,2.18836948140286,3.75355559615892,6.09541054065202,5.26773145057006,2.14541457059314,0.150238058906597,0,2.69084453533293,0.213557388818567,0,1.50045548042201,1.13357782162283,2.31876486041066,1.48893485065272,2.86919764810153,0.487185025805993,0.252433774244115,0.184099797284599,0.969876340912871,1.06502877754984,0.403008392910561,0.339121184620975,1.54608682530637,3.27295344709002,2.86804595389004,0,0,0,0.207322110030741,0,0,0,0,5.52539685409922,11.6091982007995,3.60939740834793,0.354920400119532,0.674338760312407,0.723033089650446,0.330881918197182,0.217879444092406,0.474541238222193,0.269662616320329,0.392442930250692,0.38474715694639,1.4763109092493,0,0.4115740113314,1.47008711385542,16.478154526838,7.86261773342101,11.2250082269467,0,0.614942192715568,1.02940686179115,2.96325770603289,3.37205259772859,1.40740561376283,4.35165692245089,0.651616610620649,3.11980435583874,1.44331342025273,1.04337364477569,0.939269553886573,0.433099343283221,0,2.85381228351897,0,0,0,0,0,0,0.839910640994298,1.70130116690864,8.41850113406774,3.77824120068151,8.81780162079986,0,0,0,0.288239906833923,0,0,0,0,0,0.102827492703324,0,0,0.112131084345361,0,0,0.129271715757778,3.57656445851882,0.845302752556,0.531876233169741,1.04007436911366,6.43018435655355,0,1.8649552531127,0,0,1.64648067356154,0.325736184293735,0,0,0,0,0.199945982364114,0,0,0,0,0,2.85273810081437,0.723906533337896,0.821905290201534,2.14873155887875,0,0,0,0,0.254094624222463,0,1.54657762555539,0.670065061337395,2.55175500661265,0,0,0,0.24538298343828,1.00034104211935,0.271265023699736,0,0.356857977594324,0,0.468565659970853,0,0,1.03473071292505,0,0,1.99832313276591,0.195801157462741,3.77457766191941,0,0,0,0.303127571446259,0,2.41912234663744,2.72918588600655,1.38115775959256,1.12264037773229,2.30650468660262,0,0.160853921143607,5.93672265779964,0.616838775210622,1.24293207719189,0.574890092096664,8.82732529612156,1.04589340613963,0.241718899183244,4.0101294060657,10.1289087829486,1.14814448164607,2.91345868810747,1.70461739447251,0.451199612907412,0.385076685522074,1.56869953835371,1.46139224653261,0.844413031143006,0,0.170093705276516,0.215915916102139,1.54227252690289,1.89662506280697,1.50506932156456,0,0,0.447749509444357,0.219259876645935,0,0.256450125116389,0.656029291399411,0.325378394664303,4.84292754744295,0,0.165018999841176,4.01985876597321,2.60024098414608,0,0.96670718292122,0.770243085573222,0.614014698904518,2.20538515975249,0.966782203814463,1.88521702088497,1.27839941124151,4.09547363974992,7.60310610660499,9.4173133008902,7.65676274967505,10.4192514281216,0,2.20368642781448,0.6970372701606,0,0.532306030317022,0,0.18532421910392,0.143124886741991,0,0,0,1.535386747868,0,0,0,1.43897966066652,1.37268514868027,1.7671860351853,1.01091240786658,0,0.421258456238981,0,0,2.11300293513511,0.9554993798559,0.565621727814851,0,0,0,1.31535265576129,2.31510213706675,1.31178950409327,0,0,0.281695602532241,0,0,0.35667105148125,1.41904425628239,0,0,0.75894634753143,3.84928192269481,3.75266239629497,4.69211592875051,2.17781969722645,4.33061483573184,2.58303223602738,5.05414427002877,7.98174276366016,3.21612760289743,0,0,0,0,0,0,0,0,0,0,1.47024129588619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201799707191048,0,0,0,0,0,0,0,0,0,0,0,3.929951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| |phase1_expression=1.2717486548939,0.214100523890983,2.53717927372748,0,0,3.48935409640147,2.53299878168311,2.52687949370732,0,1.96587149201207,4.18680700783456,0.655324116390517,0.791300934685361,0.74259811776028,0.662794751455832,1.34465029290355,0.602694528023977,1.46062018077475,0.975865597581014,0,0.612002073732759,0.940364164434263,0,0,0,0,0,0,0.393364276848904,0,0.154816123316076,3.67768489791571,3.614471025339,2.58827807116751,0.0774672005803016,0,0,0,0,0.217010870715852,0,0,0,0.581592955118259,1.13362783106643,0.485168122375632,0.697287110717054,0.411167888021826,0.619412741790207,0,0,0,0,0,0,0.564727018627814,1.63743690034707,0.449446968890169,0.306083892370903,1.28371610830437,0.639337125799041,0,0.199463657621632,0.852449501065388,0.290209238628584,0.56738522469114,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434539556882471,0,0.486634870302636,0.661743720148475,1.10864698731282,0.263504357079378,0.523916301990851,8.37879163072847,5.19098219898201,0,0,0,0,0,0.371457501329565,0.198762407366705,1.72046919021225,0,0.56530794192401,0.838998872419812,0.550236083880135,0,0.258416759169329,0,1.00416183829401,3.22263453687318,3.80136052859256,0.976248230192678,0,0.81014194788176,0,0,0.112611480483322,0,0.949265659568129,0.549605231791222,0,0,11.3384453557059,0.496971951695318,0.12663051166458,1.72131935057184,0.573673241497627,0.354668382198357,0,0,0,0,0.134710672069688,0,0.302714855289863,0,1.64025002283658,6.86752169026705,0.570471821544449,0.597794722207204,0.587172493218824,0.647491777472526,0.421352420106746,7.14539599392126,7.49289335601785,4.44300859055791,1.18800285728205,1.23633464639278,5.46096817162816,2.87447256726495,2.18836948140286,3.75355559615892,6.09541054065202,5.26773145057006,2.14541457059314,0.150238058906597,0,2.69084453533293,0.213557388818567,0,1.50045548042201,1.13357782162283,2.31876486041066,1.48893485065272,2.86919764810153,0.487185025805993,0.252433774244115,0.184099797284599,0.969876340912871,1.06502877754984,0.403008392910561,0.339121184620975,1.54608682530637,3.27295344709002,2.86804595389004,0,0,0,0.207322110030741,0,0,0,0,5.52539685409922,11.6091982007995,3.60939740834793,0.354920400119532,0.674338760312407,0.723033089650446,0.330881918197182,0.217879444092406,0.474541238222193,0.269662616320329,0.392442930250692,0.38474715694639,1.4763109092493,0,0.4115740113314,1.47008711385542,16.478154526838,7.86261773342101,11.2250082269467,0,0.614942192715568,1.02940686179115,2.96325770603289,3.37205259772859,1.40740561376283,4.35165692245089,0.651616610620649,3.11980435583874,1.44331342025273,1.04337364477569,0.939269553886573,0.433099343283221,0,2.85381228351897,0,0,0,0,0,0,0.839910640994298,1.70130116690864,8.41850113406774,3.77824120068151,8.81780162079986,0,0,0,0.288239906833923,0,0,0,0,0,0.102827492703324,0,0,0.112131084345361,0,0,0.129271715757778,3.57656445851882,0.845302752556,0.531876233169741,1.04007436911366,6.43018435655355,0,1.8649552531127,0,0,1.64648067356154,0.325736184293735,0,0,0,0,0.199945982364114,0,0,0,0,0,2.85273810081437,0.723906533337896,0.821905290201534,2.14873155887875,0,0,0,0,0.254094624222463,0,1.54657762555539,0.670065061337395,2.55175500661265,0,0,0,0.24538298343828,1.00034104211935,0.271265023699736,0,0.356857977594324,0,0.468565659970853,0,0,1.03473071292505,0,0,1.99832313276591,0.195801157462741,3.77457766191941,0,0,0,0.303127571446259,0,2.41912234663744,2.72918588600655,1.38115775959256,1.12264037773229,2.30650468660262,0,0.160853921143607,5.93672265779964,0.616838775210622,1.24293207719189,0.574890092096664,8.82732529612156,1.04589340613963,0.241718899183244,4.0101294060657,10.1289087829486,1.14814448164607,2.91345868810747,1.70461739447251,0.451199612907412,0.385076685522074,1.56869953835371,1.46139224653261,0.844413031143006,0,0.170093705276516,0.215915916102139,1.54227252690289,1.89662506280697,1.50506932156456,0,0,0.447749509444357,0.219259876645935,0,0.256450125116389,0.656029291399411,0.325378394664303,4.84292754744295,0,0.165018999841176,4.01985876597321,2.60024098414608,0,0.96670718292122,0.770243085573222,0.614014698904518,2.20538515975249,0.966782203814463,1.88521702088497,1.27839941124151,4.09547363974992,7.60310610660499,9.4173133008902,7.65676274967505,10.4192514281216,0,2.20368642781448,0.6970372701606,0,0.532306030317022,0,0.18532421910392,0.143124886741991,0,0,0,1.535386747868,0,0,0,1.43897966066652,1.37268514868027,1.7671860351853,1.01091240786658,0,0.421258456238981,0,0,2.11300293513511,0.9554993798559,0.565621727814851,0,0,0,1.31535265576129,2.31510213706675,1.31178950409327,0,0,0.281695602532241,0,0,0.35667105148125,1.41904425628239,0,0,0.75894634753143,3.84928192269481,3.75266239629497,4.69211592875051,2.17781969722645,4.33061483573184,2.58303223602738,5.05414427002877,7.98174276366016,3.21612760289743,0,0,0,0,0,0,0,0,0,0,1.47024129588619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201799707191048,0,0,0,0,0,0,0,0,0,0,0,3.929951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| ||
|short_description=p2@SERINC2 | |||
}} | }} |
Latest revision as of 13:13, 17 September 2015
Short description: | p2@SERINC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SERINC2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000491976, ENST00000536384, NM_001199039, NM_018565, uc010ogh.1_5end |
EntrezGene: | SERINC2 |
HGNC: | 23231 |
UniProt: | B4DJK5Q96IM8Q96SA4B7ZAP2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 1.09e-14 | 42 |
endodermal cell | 4.28e-13 | 58 |
respiratory epithelial cell | 1.62e-11 | 13 |
epithelial cell | 1.15e-10 | 253 |
epithelial cell of alimentary canal | 4.20e-07 | 20 |
epithelial cell of tracheobronchial tree | 4.43e-07 | 9 |
epithelial cell of lower respiratory tract | 4.43e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 9.01e-19 | 160 |
endoderm | 9.01e-19 | 160 |
presumptive endoderm | 9.01e-19 | 160 |
surface structure | 1.62e-18 | 99 |
mouth | 3.82e-15 | 29 |
stomodeum | 3.82e-15 | 29 |
digestive system | 3.23e-14 | 145 |
digestive tract | 3.23e-14 | 145 |
primitive gut | 3.23e-14 | 145 |
orifice | 3.91e-14 | 36 |
subdivision of head | 5.44e-13 | 49 |
head | 5.29e-11 | 56 |
oral opening | 5.98e-11 | 22 |
mouth mucosa | 1.25e-10 | 13 |
respiratory system | 4.54e-10 | 74 |
anterior region of body | 8.57e-10 | 62 |
craniocervical region | 8.57e-10 | 62 |
subdivision of digestive tract | 2.31e-08 | 118 |
exocrine gland | 4.79e-08 | 31 |
exocrine system | 4.79e-08 | 31 |
mucosa | 6.25e-08 | 20 |
gingiva | 9.08e-08 | 8 |
tracheobronchial tree | 1.16e-07 | 15 |
lower respiratory tract | 1.16e-07 | 15 |
trunk | 7.11e-07 | 199 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 6.81e-08 | 14 |