FFCP PHASE1:Hg19::chr22:39898283..39898307,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54471 | |EntrezGene=54471 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25979 | |HGNC=25979 | ||
|TSSclassifier=strong | |||
|UniProt=Q7L890,Q9NQG6 | |UniProt=Q7L890,Q9NQG6 | ||
|association_with_transcript=0bp_to_ENST00000433117,NM_019008,uc003axx.2,uc003axy.2,uc010gxz.1_5end | |association_with_transcript=0bp_to_ENST00000433117,NM_019008,uc003axx.2,uc003axy.2,uc010gxz.1_5end | ||
|cluster_id=chr22:39898283..39898307,+ | |||
|description=CAGE_peak_2_at_SMCR7L_5end | |description=CAGE_peak_2_at_SMCR7L_5end | ||
|id=chr22:39898283..39898307,+ | |id=chr22:39898283..39898307,+ | ||
|ontology_enrichment_celltype=CL:0000548!1.25e-14!679;CL:0000004!1.25e-14!679;CL:0000255!1.25e-14!679;CL:0000012!5.57e-14!682;CL:0002371!8.85e-14!591;CL:0000144!1.97e-13!625;CL:0000220!6.49e-13!246;CL:0002321!3.00e-12!248;CL:0000115!3.78e-10!35;CL:0000222!6.41e-10!119;CL:0000063!1.38e-09!578;CL:0002139!2.83e-09!24;CL:0000071!6.97e-09!18;CL:0002546!6.97e-09!18;CL:0002078!2.21e-08!44;CL:0000003!4.70e-08!722;CL:0000076!4.86e-08!62;CL:0000066!5.62e-08!254;CL:0000223!9.64e-08!59;CL:0000213!2.58e-07!57;CL:0000215!2.58e-07!57;CL:0002076!3.25e-07!43 | |ontology_enrichment_celltype=CL:0000548!1.25e-14!679;CL:0000004!1.25e-14!679;CL:0000255!1.25e-14!679;CL:0000012!5.57e-14!682;CL:0002371!8.85e-14!591;CL:0000144!1.97e-13!625;CL:0000220!6.49e-13!246;CL:0002321!3.00e-12!248;CL:0000115!3.78e-10!35;CL:0000222!6.41e-10!119;CL:0000063!1.38e-09!578;CL:0002139!2.83e-09!24;CL:0000071!6.97e-09!18;CL:0002546!6.97e-09!18;CL:0002078!2.21e-08!44;CL:0000003!4.70e-08!722;CL:0000076!4.86e-08!62;CL:0000066!5.62e-08!254;CL:0000223!9.64e-08!59;CL:0000213!2.58e-07!57;CL:0000215!2.58e-07!57;CL:0002076!3.25e-07!43 | ||
|ontology_enrichment_celltype_v019=CL:0002139;1.79e-09;24!CL:0000115;2.50e-09;36!CL:0000071;4.68e-09;18 | |ontology_enrichment_celltype_v019=CL:0002139;1.79e-09;24!CL:0000115;2.50e-09;36!CL:0000071;4.68e-09;18 | ||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.02e-12,250;CL:0000115,1.29e-10,36;CL:0000222,2.39e-10,121;CL:0002139,2.74e-09,24;CL:0000071,6.76e-09,18;CL:0002546,6.76e-09,18;CL:0002078,1.09e-08,45;CL:0000076,2.29e-08,63;CL:0000066,8.00e-08,253;CL:0000213,1.27e-07,58;CL:0000215,1.27e-07,58;CL:0000223,1.64e-07,58;CL:0002076,6.35e-07,42 | |||
|ontology_enrichment_development_v019=CL:0002546;4.68e-09;18 | |ontology_enrichment_development_v019=CL:0002546;4.68e-09;18 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000055!5.88e-12!69;UBERON:0002049!2.92e-11!79;UBERON:0007798!2.92e-11!79;UBERON:0003914!3.64e-11!118;UBERON:0001981!4.11e-11!60;UBERON:0007500!4.11e-11!60;UBERON:0004537!4.11e-11!60;UBERON:0006965!4.11e-11!60;UBERON:0001637!4.34e-10!42;UBERON:0003509!4.34e-10!42;UBERON:0004572!4.34e-10!42;UBERON:0001986!6.97e-09!18;UBERON:0004638!6.97e-09!18;UBERON:0004852!6.97e-09!18;UBERON:0004573!1.40e-08!33;UBERON:0004571!1.40e-08!33;UBERON:0004872!2.22e-08!84;UBERON:0000490!2.39e-08!138;UBERON:0000487!4.67e-08!22;UBERON:0002100!2.89e-07!216 | |ontology_enrichment_uberon=UBERON:0000055!5.88e-12!69;UBERON:0002049!2.92e-11!79;UBERON:0007798!2.92e-11!79;UBERON:0003914!3.64e-11!118;UBERON:0001981!4.11e-11!60;UBERON:0007500!4.11e-11!60;UBERON:0004537!4.11e-11!60;UBERON:0006965!4.11e-11!60;UBERON:0001637!4.34e-10!42;UBERON:0003509!4.34e-10!42;UBERON:0004572!4.34e-10!42;UBERON:0001986!6.97e-09!18;UBERON:0004638!6.97e-09!18;UBERON:0004852!6.97e-09!18;UBERON:0004573!1.40e-08!33;UBERON:0004571!1.40e-08!33;UBERON:0004872!2.22e-08!84;UBERON:0000490!2.39e-08!138;UBERON:0000487!4.67e-08!22;UBERON:0002100!2.89e-07!216 | ||
|ontology_enrichment_uberon_v019=UBERON:0004638;4.68e-09;18!UBERON:0001986;4.68e-09;18!UBERON:0004852;4.68e-09;18!UBERON:0001637;2.69e-08;42!UBERON:0003509;2.69e-08;42!UBERON:0004572;2.69e-08;42!UBERON:0004573;4.48e-08;33!UBERON:0004571;4.48e-08;33!UBERON:0000487;4.79e-08;22!UBERON:0007500;5.73e-08;56!UBERON:0001981;5.73e-08;56!UBERON:0004537;5.73e-08;56!UBERON:0003914;1.42e-07;74!UBERON:0000490;1.53e-07;33!UBERON:0000055;3.20e-07;65 | |ontology_enrichment_uberon_v019=UBERON:0004638;4.68e-09;18!UBERON:0001986;4.68e-09;18!UBERON:0004852;4.68e-09;18!UBERON:0001637;2.69e-08;42!UBERON:0003509;2.69e-08;42!UBERON:0004572;2.69e-08;42!UBERON:0004573;4.48e-08;33!UBERON:0004571;4.48e-08;33!UBERON:0000487;4.79e-08;22!UBERON:0007500;5.73e-08;56!UBERON:0001981;5.73e-08;56!UBERON:0004537;5.73e-08;56!UBERON:0003914;1.42e-07;74!UBERON:0000490;1.53e-07;33!UBERON:0000055;3.20e-07;65 | ||
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| ||
|short_description=p2@SMCR7L | |short_description=p2@SMCR7L | ||
}} | }} |
Latest revision as of 18:53, 24 September 2015
Short description: | p2@SMCR7L |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SMCR7L_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000433117, NM_019008, uc003axx.2, uc003axy.2, uc010gxz.1_5end |
EntrezGene: | SMCR7L |
HGNC: | 25979 |
UniProt: | Q7L890Q9NQG6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.02e-12 | 250 |
endothelial cell | 1.29e-10 | 36 |
mesodermal cell | 2.39e-10 | 121 |
endothelial cell of vascular tree | 2.74e-09 | 24 |
blood vessel endothelial cell | 6.76e-09 | 18 |
embryonic blood vessel endothelial progenitor cell | 6.76e-09 | 18 |
meso-epithelial cell | 1.09e-08 | 45 |
squamous epithelial cell | 2.29e-08 | 63 |
epithelial cell | 8.00e-08 | 253 |
lining cell | 1.27e-07 | 58 |
barrier cell | 1.27e-07 | 58 |
endodermal cell | 1.64e-07 | 58 |
endo-epithelial cell | 6.35e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
vessel | 1.08e-12 | 68 |
epithelial tube open at both ends | 6.28e-12 | 59 |
blood vessel | 6.28e-12 | 59 |
blood vasculature | 6.28e-12 | 59 |
vascular cord | 6.28e-12 | 59 |
vasculature | 6.59e-12 | 78 |
vascular system | 6.59e-12 | 78 |
epithelial tube | 3.70e-11 | 117 |
artery | 3.33e-10 | 42 |
arterial blood vessel | 3.33e-10 | 42 |
arterial system | 3.33e-10 | 42 |
unilaminar epithelium | 3.66e-10 | 148 |
trunk | 1.20e-09 | 199 |
splanchnic layer of lateral plate mesoderm | 5.45e-09 | 83 |
blood vessel endothelium | 6.76e-09 | 18 |
endothelium | 6.76e-09 | 18 |
cardiovascular system endothelium | 6.76e-09 | 18 |
systemic artery | 1.07e-08 | 33 |
systemic arterial system | 1.07e-08 | 33 |
simple squamous epithelium | 4.54e-08 | 22 |
trunk mesenchyme | 5.90e-07 | 122 |
epithelial vesicle | 7.15e-07 | 78 |