FFCP PHASE1:Hg19::chr1:35225339..35225343,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr1:35225339..35225343,+
|short_description=p1@GJB4
|description=CAGE_peak_1_at_GJB4_5end
|association_with_transcript=0bp_to_ENST00000339480,NM_153212,uc001bx...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=127534 | |EntrezGene=127534 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4286 | |HGNC=4286 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NTQ9 | |UniProt=Q9NTQ9 | ||
|association_with_transcript=0bp_to_ENST00000339480,NM_153212,uc001bxv.1_5end | |||
|cluster_id=chr1:35225339..35225343,+ | |||
|coexpression_cluster_id=C3975 | |||
|description=CAGE_peak_1_at_GJB4_5end | |||
|id=chr1:35225339..35225343,+ | |||
|ontology_enrichment_celltype=CL:0002076!1.32e-24!43;CL:0000066!7.76e-24!254;CL:0000223!4.19e-18!59;CL:0002159!2.85e-14!13;CL:0002368!1.50e-11!13;CL:0002251!7.19e-11!21;CL:0000244!4.31e-08!4;CL:0000731!4.31e-08!4;CL:0000076!3.80e-07!62;CL:0000240!5.61e-07!6;CL:0000311!5.61e-07!6;CL:0000079!5.61e-07!6;CL:0000237!5.61e-07!6;CL:0000036!5.61e-07!6;CL:0000357!5.61e-07!6;CL:0000114!5.61e-07!6;CL:0000362!5.90e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0002368;6.33e-19;13!CL:0002159;2.98e-18;14!CL:0002076;2.56e-16;42!CL:0000244;2.23e-12;4!CL:0000731;2.23e-12;4!CL:0002202;1.92e-10;9!CL:0002632;1.92e-10;9!CL:0002166;1.74e-09;3!CL:0002621;2.63e-09;3!CL:0002328;6.33e-09;3!CL:0000307;7.84e-09;3!CL:0002077;5.65e-08;34!CL:0000240;9.59e-08;6!CL:0000311;9.59e-08;6!CL:0000079;9.59e-08;6!CL:0000237;9.59e-08;6!CL:0000362;2.67e-07;9!CL:0002251;2.97e-07;20!CL:0000575;5.96e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.08e-21,253;CL:0002076,1.92e-20,42;CL:0002368,7.07e-19,13;CL:0002159,3.15e-18,14;CL:0000223,1.90e-16,58;CL:0000244,2.29e-12,4;CL:0000731,2.29e-12,4;CL:0002202,2.06e-10,9;CL:0002632,2.06e-10,9;CL:0002166,1.79e-09,3;CL:0002621,2.42e-09,3;CL:0002077,4.10e-09,34;CL:0002328,6.60e-09,3;CL:0000068,8.38e-09,3;CL:0000069,8.38e-09,3;CL:0000307,8.38e-09,3;CL:0000377,8.38e-09,3;CL:0000240,1.00e-07,6;CL:0000311,1.00e-07,6;CL:0000079,1.00e-07,6;CL:0000237,1.00e-07,6;CL:0000036,1.00e-07,6;CL:0000357,1.00e-07,6;CL:0000114,1.00e-07,6;CL:0000362,2.75e-07,9;CL:0002251,3.04e-07,20;CL:0000076,5.38e-07,63;CL:0000575,5.97e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000377;7.84e-09;3!CL:0000223;8.34e-09;58!CL:0000357;9.59e-08;6!CL:0000114;9.59e-08;6 | |||
|ontology_enrichment_disease=DOID:1749!8.60e-14!14;DOID:305!8.65e-08!106;DOID:299!7.74e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:1749;6.20e-11;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,5.83e-11,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!5.50e-16!169;UBERON:0000925!5.50e-16!169;UBERON:0006595!5.50e-16!169;UBERON:0000161!1.18e-11!35;UBERON:0005631!1.27e-11!14;UBERON:0000158!1.27e-11!14;UBERON:0001008!1.29e-11!45;UBERON:0006554!9.42e-11!44;UBERON:0005156!1.61e-10!59;UBERON:0000990!1.61e-10!59;UBERON:0000464!1.90e-10!104;UBERON:0001004!9.29e-10!72;UBERON:0003133!1.09e-09!48;UBERON:0001007!1.15e-09!155;UBERON:0001555!1.15e-09!155;UBERON:0007026!1.15e-09!155;UBERON:0000166!6.44e-09!21;UBERON:0000365!6.47e-09!5;UBERON:0000062!1.27e-08!511;UBERON:0000077!3.45e-08!130;UBERON:0000466!3.60e-08!126;UBERON:0004175!3.83e-08!25;UBERON:0000974!6.55e-08!10;UBERON:0003124!1.77e-07!7;UBERON:0003729!1.85e-07!5;UBERON:0003064!2.03e-07!37;UBERON:0002553!2.51e-07!70;UBERON:0005910!2.63e-07!6;UBERON:0003135!2.77e-07!11;UBERON:0003101!4.06e-07!22;UBERON:0000079!4.06e-07!22;UBERON:0000165!4.60e-07!28;UBERON:0000930!4.60e-07!28;UBERON:0004921!7.08e-07!129;UBERON:0004185!7.08e-07!129;UBERON:0003102!7.60e-07!95;UBERON:0003100!9.14e-07!41;UBERON:0000344!9.98e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0000486;4.09e-11;12!UBERON:0007196;5.08e-10;15!UBERON:0001558;5.08e-10;15!UBERON:0000365;7.03e-10;5!UBERON:0001949;2.63e-09;3!UBERON:0003126;4.34e-09;7!UBERON:0001005;4.34e-09;7!UBERON:0004815;6.33e-09;3!UBERON:0002031;6.33e-09;3!UBERON:0005631;6.88e-09;10!UBERON:0000158;6.88e-09;10!UBERON:0005910;3.28e-08;6!UBERON:0001708;3.48e-07;4!UBERON:0008895;3.48e-07;4!UBERON:0003729;6.63e-07;13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,8.45e-11,160;UBERON:0000925,8.45e-11,160;UBERON:0006595,8.45e-11,160;UBERON:0005631,1.43e-10,14;UBERON:0000158,1.43e-10,14;UBERON:0007196,5.36e-10,15;UBERON:0001558,5.36e-10,15;UBERON:0000365,7.19e-10,5;UBERON:0001949,2.42e-09,3;UBERON:0003126,4.54e-09,7;UBERON:0001005,4.54e-09,7;UBERON:0004815,6.60e-09,3;UBERON:0002031,6.60e-09,3;UBERON:0001008,1.24e-08,48;UBERON:0005910,3.34e-08,6;UBERON:0006554,1.19e-07,47;UBERON:0001708,3.55e-07,4;UBERON:0008895,3.55e-07,4;UBERON:0001004,4.19e-07,74;UBERON:0005178,5.79e-07,34;UBERON:0002224,5.79e-07,34;UBERON:0003729,6.38e-07,13 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0.873765488520689,1.84636884759917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787107813136792,0,0,0,5.51652734687356,8.13255980701275,7.02532619316897,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,18.5790597029197,15.2021621541616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.54141078213801,0,0,0,0,0,0.560677600142307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.1417380151042,10.3643525824517,10.8985746247821,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,25.5718165002098,5.62008766288098,24.6295982408496,3.24059558054854,0,0,0,0,0,0,0,0,1.58040879591855,0,0,0,0,17.8094284574876,13.6065523841076,13.0433089462996,0.0895585227028483,0.290633938513962,6.9008882249738,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.15316871458641,0,0.604780586659361,0,0,0,0,0,0,0,0,0,0,0,0,0,19.4491276194186,10.0368277940127,0,0,0.131124414959424,3.60959690325929,1.92538342761037,0,0,1.05551628892876,0,0,0,0,0,0,1.01950509218015,0.831076008928724,0.895499018888713,0,0,0,0,0,0,0,0,1.14853107599234,2.60024098414608,0,0,0,0,0,0,0,0,0,8.92538542949282,3.65161127993702,4.08360679982669,4.4509423576442,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.56376803257057,9.38423185750102,3.26672954583968,0.0941438007767792,20.2337525155478,20.2165770801151,39.9087138183008,13.0942338117967,0,0,0,0,0,0,0,0,0,0,2.45040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,26.0231488364082,2.07875276582847,13.8222315944654,0,0,0,0,0,0.398495976502139,0.552567831062295,0,0,0,0,0.449341755736634,0,0,1.1837208676432,0,0,0,0,0,0,0,0,3.86897724170699,0,0,0,0,0,0,0,0,0,0,0,0,6.69233972537296,0.769502585037971,0,0,0,0,3.82801391678303,0.732780747214898,2.13213910407454,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0.611030144933625,0,0,0,0,0,0,0,4.50028623543806,0,1.18375320854817,0,0,0,0,0,0,0,0,0,0,0,0.347119476670262,21.7543122259918,0.435296032902013,4.19344003780872,0,0,0,0,1.26085721434945,0,3.84167259326905,0,0,0,1.95551382734803,0.0801588202515337,3.62870091056899,0,0.144090417154106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,1.5476039091159,0,0.335434687599266,0.157611414598396,0.0524545881349981,0,0,0.575745591958336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.22889013390003,0,0,0,0,0,0,14.6818489287142,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0.28984205722165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179088841081487,0,0,0,0,0,0.256241518587947,0,0,0,0,0,0.327130788511688,0,0,6.76198794747607,0,0,0,0,0,7.27373440141111,6.22077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.687034029507179,2.47736419030255,4.95257216008533,0.115525666150338,0,0,0,0.0752103283492573,0,0,0,0,10.3499260351932,0,0,0,0,0,0,2.97726707033577,0,2.04419884223352,0,0,0,0,1.33053555243958,0,0,0,0,0,0,0.863424021355654,0,0,0.913158720509496,0.863710364874486,0,0.0714765441766563,0,0,0,0,0.207216164163037,0.17071847709395,0,0.430227358820278,0,0,0.846774100381858,0.22910686854405,0.31020638566432,0.955538938977433,0.111855431797792,0.687051635306701,2.56027642462766,0,0,0,4.85710993059139,0,0,0,0,0,0,0.154348316215889,0,0,0.490296643507811,0,0,0,0,0,0,0,0,2.14264726326789,10.2339512797551,0,0,0.458729283404541,0,0,0,0,0,0,0,0,0,0,0,1.73381010561369,0.26721740526556,0.459474497674225,0,0.454672189309436,0,0,0,1.49263787330687,1.42838658878244,0.0645889098360061,0.558672428662721,0,0,0,0.653150243690884,0,0.942928742204225,1.5061663132462,2.32862249582209,0.244209805832924,0,0,1.70667884002515,0,0,0.406896178315738,2.66302709674205,0,0 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| ||
|short_description=p1@GJB4 | |||
}} | }} |
Latest revision as of 17:46, 17 September 2015
Short description: | p1@GJB4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GJB4_5end |
Coexpression cluster: | C3975_Urothelial_Keratinocyte_amniotic_Corneal_epidermoid_Prostate_papillotubular |
Association with transcript: | 0bp_to_ENST00000339480, NM_153212, uc001bxv.1_5end |
EntrezGene: | GJB4 |
HGNC: | 4286 |
UniProt: | Q9NTQ9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 8.45e-11 | 160 |
endoderm | 8.45e-11 | 160 |
presumptive endoderm | 8.45e-11 | 160 |
extraembryonic membrane | 1.43e-10 | 14 |
membranous layer | 1.43e-10 | 14 |
tracheobronchial tree | 5.36e-10 | 15 |
lower respiratory tract | 5.36e-10 | 15 |
urothelium | 7.19e-10 | 5 |
gingival epithelium | 2.42e-09 | 3 |
trachea | 4.54e-09 | 7 |
respiratory airway | 4.54e-09 | 7 |
lower respiratory tract epithelium | 6.60e-09 | 3 |
epithelium of bronchus | 6.60e-09 | 3 |
renal system | 1.24e-08 | 48 |
transitional epithelium | 3.34e-08 | 6 |
urinary system structure | 1.19e-07 | 47 |
jaw skeleton | 3.55e-07 | 4 |
splanchnocranium | 3.55e-07 | 4 |
respiratory system | 4.19e-07 | 74 |
thoracic cavity element | 5.79e-07 | 34 |
thoracic cavity | 5.79e-07 | 34 |
mouth mucosa | 6.38e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 5.83e-11 | 14 |