FFCP PHASE1:Hg19::chr1:14057463..14057496,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7799 | |EntrezGene=7799 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9347 | |HGNC=9347 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc001avj.2_5end | |association_with_transcript=0bp_to_uc001avj.2_5end | ||
|cluster_id=chr1:14057463..14057496,+ | |||
|coexpression_cluster_id=C47 | |coexpression_cluster_id=C47 | ||
|description=CAGE_peak_4_at_PRDM2_5end | |description=CAGE_peak_4_at_PRDM2_5end | ||
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|ontology_enrichment_celltype=CL:0000542!1.09e-44!53;CL:0000051!1.09e-44!53;CL:0000838!2.81e-43!52;CL:0000945!1.89e-34!24;CL:0000826!1.89e-34!24;CL:0000738!2.22e-26!140;CL:0002087!4.60e-26!119;CL:0000236!1.30e-21!14;CL:0002031!1.18e-20!124;CL:0000037!1.62e-18!172;CL:0000566!1.62e-18!172;CL:0000988!3.92e-17!182;CL:0002032!6.38e-16!165;CL:0000837!6.38e-16!165;CL:0000791!1.12e-10!18;CL:0000789!1.12e-10!18;CL:0002420!1.12e-10!18;CL:0002419!1.12e-10!18;CL:0000790!1.12e-10!18;CL:0000084!2.77e-10!25;CL:0000827!2.77e-10!25;CL:0000625!4.64e-07!11 | |ontology_enrichment_celltype=CL:0000542!1.09e-44!53;CL:0000051!1.09e-44!53;CL:0000838!2.81e-43!52;CL:0000945!1.89e-34!24;CL:0000826!1.89e-34!24;CL:0000738!2.22e-26!140;CL:0002087!4.60e-26!119;CL:0000236!1.30e-21!14;CL:0002031!1.18e-20!124;CL:0000037!1.62e-18!172;CL:0000566!1.62e-18!172;CL:0000988!3.92e-17!182;CL:0002032!6.38e-16!165;CL:0000837!6.38e-16!165;CL:0000791!1.12e-10!18;CL:0000789!1.12e-10!18;CL:0002420!1.12e-10!18;CL:0002419!1.12e-10!18;CL:0000790!1.12e-10!18;CL:0000084!2.77e-10!25;CL:0000827!2.77e-10!25;CL:0000625!4.64e-07!11 | ||
|ontology_enrichment_celltype_v019=CL:0000945;1.39e-61;24!CL:0000236;1.30e-49;13!CL:0000542;1.11e-28;53!CL:0002087;8.48e-10;104!CL:0000815;3.37e-08;2!CL:0000792;3.37e-08;2!CL:0002677;3.37e-08;2 | |ontology_enrichment_celltype_v019=CL:0000945;1.39e-61;24!CL:0000236;1.30e-49;13!CL:0000542;1.11e-28;53!CL:0002087;8.48e-10;104!CL:0000815;3.37e-08;2!CL:0000792;3.37e-08;2!CL:0002677;3.37e-08;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0000945,2.56e-61,24;CL:0000826,2.56e-61,24;CL:0000236,1.37e-52,14;CL:0000542,4.97e-43,53;CL:0000051,4.97e-43,53;CL:0000838,2.29e-40,52;CL:0002087,4.63e-24,115;CL:0000738,2.55e-22,136;CL:0002031,6.61e-18,120;CL:0000037,1.41e-16,168;CL:0000988,2.43e-15,177;CL:0002032,3.88e-15,161;CL:0000837,3.88e-15,161;CL:0000817,1.21e-11,3;CL:0000785,1.27e-08,2;CL:0000955,1.27e-08,2;CL:0000818,1.27e-08,2;CL:0000954,1.27e-08,2;CL:0000816,1.27e-08,2;CL:0000815,3.64e-08,2;CL:0000792,3.64e-08,2;CL:0002677,3.64e-08,2 | |||
|ontology_enrichment_development_v019=CL:0000051;1.11e-28;53!UBERON:0004872;9.29e-09;7!CL:0000954;9.86e-09;2 | |ontology_enrichment_development_v019=CL:0000051;1.11e-28;53!UBERON:0004872;9.29e-09;7!CL:0000954;9.86e-09;2 | ||
|ontology_enrichment_disease=DOID:0060058!5.05e-07!10 | |ontology_enrichment_disease=DOID:0060058!5.05e-07!10 | ||
|ontology_enrichment_disease_v019=DOID:0060058;3.42e-10;10 | |ontology_enrichment_disease_v019=DOID:0060058;3.42e-10;10 | ||
|ontology_enrichment_disease_v019_2=DOID:0060058,3.47e-10,10 | |||
|ontology_enrichment_uberon=UBERON:0000178!6.81e-08!15;UBERON:0000179!6.81e-08!15;UBERON:0000463!6.81e-08!15 | |ontology_enrichment_uberon=UBERON:0000178!6.81e-08!15;UBERON:0000179!6.81e-08!15;UBERON:0000463!6.81e-08!15 | ||
|ontology_enrichment_uberon_v019=UBERON:0004177;3.09e-12;5!UBERON:0005057;3.09e-12;5!UBERON:0002106;4.99e-12;3!UBERON:0002390;2.55e-07;32 | |ontology_enrichment_uberon_v019=UBERON:0004177;3.09e-12;5!UBERON:0005057;3.09e-12;5!UBERON:0002106;4.99e-12;3!UBERON:0002390;2.55e-07;32 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,5.95e-12,3;UBERON:0004854,5.95e-12,3;UBERON:0009034,5.95e-12,3;UBERON:0002095,5.95e-12,3;UBERON:0004782,5.95e-12,3;UBERON:0003281,5.95e-12,3;UBERON:0009664,5.95e-12,3;UBERON:0002296,5.95e-12,3;UBERON:0005602,5.95e-12,3;UBERON:0001179,5.95e-12,3;UBERON:0006293,5.95e-12,3;UBERON:0004177,1.32e-08,7;UBERON:0005057,1.32e-08,7 | |||
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| ||
|short_description=p4@PRDM2 | |short_description=p4@PRDM2 | ||
}} | }} |
Latest revision as of 16:01, 16 September 2015
Short description: | p4@PRDM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_PRDM2_5end |
Coexpression cluster: | C47_CD19_Burkitt_acute_xeroderma_tonsil_lymphoma_appendix |
Association with transcript: | 0bp_to_uc001avj.2_5end |
EntrezGene: | PRDM2 |
HGNC: | 9347 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 2.56e-61 | 24 |
pro-B cell | 2.56e-61 | 24 |
B cell | 1.37e-52 | 14 |
lymphocyte | 4.97e-43 | 53 |
common lymphoid progenitor | 4.97e-43 | 53 |
lymphoid lineage restricted progenitor cell | 2.29e-40 | 52 |
nongranular leukocyte | 4.63e-24 | 115 |
leukocyte | 2.55e-22 | 136 |
hematopoietic lineage restricted progenitor cell | 6.61e-18 | 120 |
hematopoietic stem cell | 1.41e-16 | 168 |
hematopoietic cell | 2.43e-15 | 177 |
hematopoietic oligopotent progenitor cell | 3.88e-15 | 161 |
hematopoietic multipotent progenitor cell | 3.88e-15 | 161 |
precursor B cell | 1.21e-11 | 3 |
mature B cell | 1.27e-08 | 2 |
pre-B-II cell | 1.27e-08 | 2 |
transitional stage B cell | 1.27e-08 | 2 |
small pre-B-II cell | 1.27e-08 | 2 |
immature B cell | 1.27e-08 | 2 |
regulatory T cell | 3.64e-08 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 3.64e-08 | 2 |
naive regulatory T cell | 3.64e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
spleen | 5.95e-12 | 3 |
gastrointestinal system mesentery | 5.95e-12 | 3 |
stomach region | 5.95e-12 | 3 |
mesentery | 5.95e-12 | 3 |
gastrointestinal system serosa | 5.95e-12 | 3 |
mesentery of stomach | 5.95e-12 | 3 |
gut mesentery | 5.95e-12 | 3 |
dorsal mesentery | 5.95e-12 | 3 |
dorsal mesogastrium | 5.95e-12 | 3 |
peritoneal cavity | 5.95e-12 | 3 |
spleen primordium | 5.95e-12 | 3 |
hemopoietic organ | 1.32e-08 | 7 |
immune organ | 1.32e-08 | 7 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 3.47e-10 | 10 |