FFCP PHASE1:Hg19::chr6:42981600..42981631,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4201 | |EntrezGene=4201 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6986 | |HGNC=6986 | ||
|TSSclassifier=strong | |||
|UniProt=Q16626 | |UniProt=Q16626 | ||
|association_with_transcript=0bp_to_NM_014623,uc003otk.2_5end | |association_with_transcript=0bp_to_NM_014623,uc003otk.2_5end | ||
|cluster_id=chr6:42981600..42981631,- | |||
|coexpression_cluster_id=C1 | |coexpression_cluster_id=C1 | ||
|description=CAGE_peak_2_at_MEA1_5end | |description=CAGE_peak_2_at_MEA1_5end | ||
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|ontology_enrichment_celltype=CL:0000055!1.92e-22!180;CL:0002321!8.31e-20!248;CL:0000220!2.49e-19!246;CL:0000548!4.37e-17!679;CL:0000004!4.37e-17!679;CL:0000255!4.37e-17!679;CL:0000222!2.10e-16!119;CL:0000012!2.27e-16!682;CL:0000066!3.19e-11!254;CL:0000393!7.87e-11!60;CL:0000211!7.87e-11!60;CL:0000183!4.54e-10!59;CL:0000680!6.35e-10!57;CL:0000056!6.35e-10!57;CL:0000355!6.35e-10!57;CL:0000187!1.02e-09!54;CL:0000003!1.45e-09!722;CL:0000192!2.85e-09!42;CL:0000514!2.85e-09!42;CL:0000359!4.03e-09!32;CL:0000144!6.70e-09!625;CL:0000333!2.50e-08!41;CL:0000133!1.16e-07!59 | |ontology_enrichment_celltype=CL:0000055!1.92e-22!180;CL:0002321!8.31e-20!248;CL:0000220!2.49e-19!246;CL:0000548!4.37e-17!679;CL:0000004!4.37e-17!679;CL:0000255!4.37e-17!679;CL:0000222!2.10e-16!119;CL:0000012!2.27e-16!682;CL:0000066!3.19e-11!254;CL:0000393!7.87e-11!60;CL:0000211!7.87e-11!60;CL:0000183!4.54e-10!59;CL:0000680!6.35e-10!57;CL:0000056!6.35e-10!57;CL:0000355!6.35e-10!57;CL:0000187!1.02e-09!54;CL:0000003!1.45e-09!722;CL:0000192!2.85e-09!42;CL:0000514!2.85e-09!42;CL:0000359!4.03e-09!32;CL:0000144!6.70e-09!625;CL:0000333!2.50e-08!41;CL:0000133!1.16e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0000359;1.16e-08;32 | |ontology_enrichment_celltype_v019=CL:0000359;1.16e-08;32 | ||
|ontology_enrichment_celltype_v019_2=CL:0002321,6.33e-19,250;CL:0000222,8.16e-16,121;CL:0000393,2.55e-10,61;CL:0000211,2.55e-10,61;CL:0000066,6.65e-10,253;CL:0000680,2.07e-09,58;CL:0000056,2.07e-09,58;CL:0000355,2.07e-09,58;CL:0000187,3.47e-09,55;CL:0000359,4.14e-09,32;CL:0000192,1.22e-08,43;CL:0000514,1.22e-08,43;CL:0000333,1.49e-08,41;CL:0000133,8.22e-08,59 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:14566!3.44e-09!239;DOID:162!4.56e-09!235 | |ontology_enrichment_disease=DOID:14566!3.44e-09!239;DOID:162!4.56e-09!235 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2=DOID:14566,8.34e-08,239;DOID:162,1.11e-07,235 | |||
|ontology_enrichment_uberon=UBERON:0004872!5.06e-12!84;UBERON:0001637!6.98e-12!42;UBERON:0003509!6.98e-12!42;UBERON:0004572!6.98e-12!42;UBERON:0000914!2.34e-11!83;UBERON:0002329!2.34e-11!83;UBERON:0003077!2.34e-11!83;UBERON:0003059!2.34e-11!83;UBERON:0007282!2.34e-11!83;UBERON:0009618!2.34e-11!83;UBERON:0007285!2.34e-11!83;UBERON:0001981!8.40e-11!60;UBERON:0007500!8.40e-11!60;UBERON:0004537!8.40e-11!60;UBERON:0006965!8.40e-11!60;UBERON:0004290!3.15e-10!70;UBERON:0000055!3.77e-10!69;UBERON:0002049!5.09e-10!79;UBERON:0007798!5.09e-10!79;UBERON:0000119!1.10e-09!312;UBERON:0000486!1.24e-09!82;UBERON:0000490!1.25e-09!138;UBERON:0003914!1.77e-09!118;UBERON:0005256!5.97e-09!143;UBERON:0000483!6.39e-09!309;UBERON:0001134!3.15e-08!61;UBERON:0002036!3.15e-08!61;UBERON:0003082!3.15e-08!61;UBERON:0004573!4.67e-08!33;UBERON:0004571!4.67e-08!33;UBERON:0003104!1.05e-07!238;UBERON:0009142!1.05e-07!238;UBERON:0002385!2.91e-07!63;UBERON:0001015!2.91e-07!63;UBERON:0000383!2.91e-07!63;UBERON:0002100!3.31e-07!216;UBERON:0000477!6.35e-07!286;UBERON:0000072!9.49e-07!46 | |ontology_enrichment_uberon=UBERON:0004872!5.06e-12!84;UBERON:0001637!6.98e-12!42;UBERON:0003509!6.98e-12!42;UBERON:0004572!6.98e-12!42;UBERON:0000914!2.34e-11!83;UBERON:0002329!2.34e-11!83;UBERON:0003077!2.34e-11!83;UBERON:0003059!2.34e-11!83;UBERON:0007282!2.34e-11!83;UBERON:0009618!2.34e-11!83;UBERON:0007285!2.34e-11!83;UBERON:0001981!8.40e-11!60;UBERON:0007500!8.40e-11!60;UBERON:0004537!8.40e-11!60;UBERON:0006965!8.40e-11!60;UBERON:0004290!3.15e-10!70;UBERON:0000055!3.77e-10!69;UBERON:0002049!5.09e-10!79;UBERON:0007798!5.09e-10!79;UBERON:0000119!1.10e-09!312;UBERON:0000486!1.24e-09!82;UBERON:0000490!1.25e-09!138;UBERON:0003914!1.77e-09!118;UBERON:0005256!5.97e-09!143;UBERON:0000483!6.39e-09!309;UBERON:0001134!3.15e-08!61;UBERON:0002036!3.15e-08!61;UBERON:0003082!3.15e-08!61;UBERON:0004573!4.67e-08!33;UBERON:0004571!4.67e-08!33;UBERON:0003104!1.05e-07!238;UBERON:0009142!1.05e-07!238;UBERON:0002385!2.91e-07!63;UBERON:0001015!2.91e-07!63;UBERON:0000383!2.91e-07!63;UBERON:0002100!3.31e-07!216;UBERON:0000477!6.35e-07!286;UBERON:0000072!9.49e-07!46 | ||
|ontology_enrichment_uberon_v019=UBERON:0001637;1.55e-08;42!UBERON:0003509;1.55e-08;42!UBERON:0004572;1.55e-08;42!UBERON:0004573;1.86e-07;33!UBERON:0004571;1.86e-07;33!UBERON:0007500;2.39e-07;56!UBERON:0001981;2.39e-07;56!UBERON:0004537;2.39e-07;56 | |ontology_enrichment_uberon_v019=UBERON:0001637;1.55e-08;42!UBERON:0003509;1.55e-08;42!UBERON:0004572;1.55e-08;42!UBERON:0004573;1.86e-07;33!UBERON:0004571;1.86e-07;33!UBERON:0007500;2.39e-07;56!UBERON:0001981;2.39e-07;56!UBERON:0004537;2.39e-07;56 | ||
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| ||
|short_description=p2@MEA1 | |short_description=p2@MEA1 | ||
}} | }} |
Latest revision as of 21:08, 18 September 2015
Short description: | p2@MEA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_MEA1_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 0bp_to_NM_014623, uc003otk.2_5end |
EntrezGene: | MEA1 |
HGNC: | 6986 |
UniProt: | Q16626 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 6.33e-19 | 250 |
mesodermal cell | 8.16e-16 | 121 |
electrically responsive cell | 2.55e-10 | 61 |
electrically active cell | 2.55e-10 | 61 |
epithelial cell | 6.65e-10 | 253 |
muscle precursor cell | 2.07e-09 | 58 |
myoblast | 2.07e-09 | 58 |
multi-potent skeletal muscle stem cell | 2.07e-09 | 58 |
muscle cell | 3.47e-09 | 55 |
vascular associated smooth muscle cell | 4.14e-09 | 32 |
smooth muscle cell | 1.22e-08 | 43 |
smooth muscle myoblast | 1.22e-08 | 43 |
migratory neural crest cell | 1.49e-08 | 41 |
neurectodermal cell | 8.22e-08 | 59 |
Ontology term | p-value | n |
---|---|---|
artery | 3.21e-12 | 42 |
arterial blood vessel | 3.21e-12 | 42 |
arterial system | 3.21e-12 | 42 |
splanchnic layer of lateral plate mesoderm | 3.67e-12 | 83 |
epithelial tube open at both ends | 4.82e-11 | 59 |
blood vessel | 4.82e-11 | 59 |
blood vasculature | 4.82e-11 | 59 |
vascular cord | 4.82e-11 | 59 |
epithelial vesicle | 6.45e-11 | 78 |
unilaminar epithelium | 9.92e-11 | 148 |
vessel | 2.85e-10 | 68 |
vasculature | 5.64e-10 | 78 |
vascular system | 5.64e-10 | 78 |
dense mesenchyme tissue | 1.04e-09 | 73 |
epithelial tube | 1.38e-09 | 117 |
paraxial mesoderm | 1.61e-09 | 72 |
presumptive paraxial mesoderm | 1.61e-09 | 72 |
somite | 1.87e-09 | 71 |
presomitic mesoderm | 1.87e-09 | 71 |
presumptive segmental plate | 1.87e-09 | 71 |
dermomyotome | 1.87e-09 | 71 |
trunk paraxial mesoderm | 1.87e-09 | 71 |
cell layer | 6.66e-09 | 309 |
multilaminar epithelium | 8.06e-09 | 83 |
systemic artery | 2.80e-08 | 33 |
systemic arterial system | 2.80e-08 | 33 |
epithelium | 3.66e-08 | 306 |
skeletal muscle tissue | 1.29e-07 | 62 |
striated muscle tissue | 1.29e-07 | 62 |
myotome | 1.29e-07 | 62 |
muscle tissue | 9.56e-07 | 64 |
musculature | 9.56e-07 | 64 |
musculature of body | 9.56e-07 | 64 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 8.34e-08 | 239 |
cancer | 1.11e-07 | 235 |