FFCP PHASE1:Hg19::chr20:12989572..12989583,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr20:12989572..12989583,+
|short_description=p3@SPTLC3
|description=CAGE_peak_3_at_SPTLC3_5end
|association_with_transcript=-43bp_to_ENST00000476791,NM_018327,...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55304 | |EntrezGene=55304 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16253 | |HGNC=16253 | ||
|TSSclassifier=strong | |||
|UniProt=Q8N2H1,Q9NUV7 | |UniProt=Q8N2H1,Q9NUV7 | ||
|association_with_transcript=-43bp_to_ENST00000476791,NM_018327,uc002wob.1,uc002woc.2,uc002wod.1_5end | |||
|cluster_id=chr20:12989572..12989583,+ | |||
|description=CAGE_peak_3_at_SPTLC3_5end | |||
|id=chr20:12989572..12989583,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002564;1.08e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002564,7.34e-08,3 | |||
|ontology_enrichment_development_v019=UBERON:0006241;9.23e-07;3!UBERON:0003057;9.23e-07;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000062!1.82e-09!511;UBERON:0000481!7.05e-09!347;UBERON:0007023!3.02e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0011135;3.05e-12;5!UBERON:0002216;3.05e-12;5!UBERON:0011134;3.05e-12;5!UBERON:0002209;3.05e-12;5!UBERON:0002213;3.05e-12;5!UBERON:0007844;3.05e-12;5!UBERON:0011138;3.05e-12;5!UBERON:0001130;3.05e-12;5!UBERON:0001066;3.05e-12;5!UBERON:0001468;3.05e-12;5!UBERON:0002242;1.08e-07;3!UBERON:0004905;1.90e-07;8!UBERON:0000982;1.90e-07;8!UBERON:0004770;1.90e-07;8!UBERON:0002240;9.23e-07;3!UBERON:0005174;9.23e-07;3!UBERON:0001137;9.23e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0011135,2.06e-12,5;UBERON:0002216,2.06e-12,5;UBERON:0011134,2.06e-12,5;UBERON:0002209,2.06e-12,5;UBERON:0002213,2.06e-12,5;UBERON:0005856,2.06e-12,5;UBERON:0005866,2.06e-12,5;UBERON:0005863,2.06e-12,5;UBERON:0007844,2.06e-12,5;UBERON:0011138,2.06e-12,5;UBERON:0001130,2.06e-12,5;UBERON:0001066,2.06e-12,5;UBERON:0001468,2.06e-12,5;UBERON:0002530,7.29e-08,59;UBERON:0002242,7.34e-08,3;UBERON:0003068,7.34e-08,3;UBERON:0002328,7.34e-08,3;UBERON:0004880,7.34e-08,3;UBERON:0003408,1.17e-07,10;UBERON:0004905,1.51e-07,8;UBERON:0000982,1.51e-07,8;UBERON:0004770,1.51e-07,8;UBERON:0002240,7.82e-07,3;UBERON:0005174,7.82e-07,3;UBERON:0001137,7.82e-07,3;UBERON:0002368,9.29e-07,35 | |||
|phase1_expression=0.363356758541113,0,0.563817616383885,0,0.893922188854576,0.872338524100369,0,0,0,0,0,0.218441372130172,0,8.91117741312336,4.30816588446291,0,0,0.730310090387373,0,0.492484232307152,0.408001382488506,0.626909442956176,0,0.410623275218653,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0.284338464974843,1.17440175733939,0,0.200544447470142,0,0.671746422719773,0.647787332037959,0,0,0,0,0,0,0,0.28769239232215,0.512321413058201,0.945928919554341,0,0,0,0,0,0,0,0,0,0.329851300186716,0,0.426224750532694,0,0,0,0,0.521482918420201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,1.12101712596307,0.526768169550154,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.535081656179426,0,0,0.383220493601921,0,0,0.318565414324097,0,0,0,0.127986611154418,0,0,0,0.201606743224732,0,0.144824403882799,0,1.34140171940727,0,0.361439152384566,0.50133791063589,1.01392563272577,1.5905718941022,7.29952305453954,2.3633704291017,0.665188192387692,0.966182642624386,0.851363990735132,0,0.370784442784429,0.649094787309367,0.348259474598534,0.26591592103773,0,0,0,0.198762407366705,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0.0892997282840798,0.44905874525234,0.225222960966644,0,0,0,0,0,0,0,0.25326102332916,0,0.860509862246441,0,0.560677600142307,0,0.49333509683432,0.622422070799533,0.269421344139376,0.163461903113459,0.605429710579726,0,0,0.312160076830321,0,0.149448680551801,0,0.323745888736263,0.140450806702248,0.408308342509787,0.859840221182376,0.929932030581889,0,0,0,0,0.168336113954066,0.500474079487857,0.554128230968366,0,0,0,0,0.179389635688862,0.427114777637135,0.211931901159562,0,0,1.54584324027377,0.18611685633159,0.168776332241266,0.0974370051611986,0.252433774244115,0,0.969876340912871,0,0,0.339121184620975,0.193260853163297,0.272746120590835,0.573609190778008,0,0,0,0.10366105501537,0,0,0,1.28648187638577,0,0.928735856063958,1.44375896333917,0.709840800239063,0.337169380156203,0.482022059766964,0.330881918197182,0.435758888184812,0.71181185733329,0.269662616320329,0.196221465125346,0,0,0,0,0,2.53510069643662,0.982827216677626,0.590789906681404,0,4.67356066463832,1.3725424823882,1.09750285408626,0,0.100528972411631,0.925884451585296,0,0,0,0.34779121492523,0.117408694235822,0,0,0,0,0,0.246217006087397,0,0.297262324577456,0,0.503946384596579,0.141775097242386,0.358234090811393,0,0,0,0.880484340132261,0.414656231081544,0.576479813667846,0.12624243342638,0,0.381988425558278,0,0,0,0,0,0.112131084345361,0,0.51336800074665,0,0,0,0,0,0.514414748524284,0,0,0.142977993658148,0,0,0,0.355391948742546,0,0.602878754119172,0,0.99972991182057,0,1.00451418286425,0,0,0,1.42636905040718,0.434343920002738,4.10952645100767,0.358121926479791,0,0.197030760201927,0,0.128343036279748,0,0,0,0.167516265334349,0,0,0,0,7.11610651971011,2.00068208423871,1.89885516589815,0.207970861530807,0.356857977594324,0,1.17141414992713,0.601892199455438,0,1.03473071292505,0,0.184369168541703,0.434418072340414,0.195801157462741,0,0.620304078368662,0,0,0.303127571446259,0,0,0,0,0,0.128139149255701,0,0,0,0,0.177561725313127,0.574890092096664,0,0.464841513839837,0.966875596732978,0,0.0920809889358963,0,0.182091168006717,0.786746489756545,0,0.15403067420883,0,0,0.105551628892876,0,0,0.215915916102139,0,0.541892875087706,0,0.254876273045038,0,0.223874754722178,0,0,0,0,0,5.564214628977,0.457847324091717,0.742585499285292,0.574265537996172,0,0,0.096670718292122,1.07834031980251,0.15350367472613,0.275673144969061,1.82614416276065,0.725083469571143,0.340906509664404,0.445160178233687,0.330569830721956,0.192190067365106,0.127612712494584,0.10115778085555,0,0.31481234683064,0,0,0,0,0.18532421910392,0.143124886741991,1.86079184679834,0.949138274156178,0,0,1.71175595213568,0.95460974377781,0,0.719489830333259,0.823611089208164,0,0.202182481573316,0,0,0.48763373908959,0,0,0,0.141405431953713,0,0,0,0,0.578775534266688,0.655894752046633,0.202910376962704,0.30982349809975,0,0.143411352204052,0.687743287091848,0,0,0.844430541190656,0.658589785919804,0,0,0.48111056362756,0,1.08890984861323,4.70719003883896,0,0,0,0,0.507447609232169,0,0,0,0,0,0,0,0,0,0,0,1.44269212976445,0,0,0,0,0,0,0,0.456469358066384,0,2.50634477090067,0,0,0,0.425846237690326,0,0,0,0,0.19538809540204,0,0,0,0,0,0,0.879049075631364,0,0,1.42068073403207,0.71623345421307,0,1.22864280839693,1.9882952955326,0.140669416410513,2.00355669041231,0,0,0.19924798825107,0,0,0.20453736500431,0,0,0.539210106883961,0.179021174675609,0,0.197286811273867,0,0,0,0.185536196323703,0,0,0,0,0.910347586283997,0.254253650292766,0,0,0,0,1.77148277162768,0.723578631752448,0,0.331737779793674,0.295547618953547,1.09692698576986,0.762569244632931,1.11538995422883,0.538651809526579,0,0,0,0.108647371922008,0.31900115973192,0,0,0,0.156980256395025,0,0,0,0,0,0.476809736941136,0.210998064528027,2.12202650606892,1.55488378577335,0.649165919226273,0,0.265372693510018,0.611030144933625,0,0,0,0.606610196826093,0.802577647298789,0,0,0.19566461893209,0,0.394584402849391,0,0,3.28570214068137,0,0,0,0,0,0,3.69992409838731,0,1.5620376450161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| ||
|short_description=p3@SPTLC3 | |||
}} | }} |
Latest revision as of 04:22, 20 September 2015
Short description: | p3@SPTLC3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SPTLC3_5end |
Coexpression cluster: | NA |
Association with transcript: | -43bp_to_ENST00000476791, NM_018327, uc002wob.1, uc002woc.2, uc002wod.1_5end |
EntrezGene: | SPTLC3 |
HGNC: | 16253 |
UniProt: | Q8N2H1Q9NUV7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nucleus pulposus cell of intervertebral disc | 7.34e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
intervertebral cartilage | 2.06e-12 | 5 |
symphysis | 2.06e-12 | 5 |
nonsynovial joint | 2.06e-12 | 5 |
fibrous joint | 2.06e-12 | 5 |
cartilaginous joint | 2.06e-12 | 5 |
developing mesenchymal condensation | 2.06e-12 | 5 |
pre-cartilage condensation | 2.06e-12 | 5 |
cartilaginous condensation | 2.06e-12 | 5 |
cartilage element | 2.06e-12 | 5 |
post-cranial axial skeletal system | 2.06e-12 | 5 |
vertebral column | 2.06e-12 | 5 |
intervertebral disk | 2.06e-12 | 5 |
intervertebral joint | 2.06e-12 | 5 |
gland | 7.29e-08 | 59 |
nucleus pulposus | 7.34e-08 | 3 |
axial mesoderm | 7.34e-08 | 3 |
notochord | 7.34e-08 | 3 |
chordamesoderm | 7.34e-08 | 3 |
gland of gut | 1.17e-07 | 10 |
articulation | 1.51e-07 | 8 |
skeletal joint | 1.51e-07 | 8 |
articular system | 1.51e-07 | 8 |
spinal cord | 7.82e-07 | 3 |
dorsal region element | 7.82e-07 | 3 |
dorsum | 7.82e-07 | 3 |
endocrine gland | 9.29e-07 | 35 |