FFCP PHASE1:Hg19::chr1:43224927..43224940,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:43224927..43224940,- | |||
|description=CAGE_peak_at_chr1:43224927..43224940,- | |description=CAGE_peak_at_chr1:43224927..43224940,- | ||
|id=chr1:43224927..43224940,- | |id=chr1:43224927..43224940,- | ||
|ontology_enrichment_celltype=CL:0000055!1.48e-18!180;CL:0000144!7.61e-17!625;CL:0000048!7.92e-16!430;CL:0000723!4.94e-15!436;CL:0002371!5.42e-15!591;CL:0000034!9.53e-15!444;CL:0000548!1.40e-14!679;CL:0000004!1.40e-14!679;CL:0000255!1.40e-14!679;CL:0000012!7.67e-14!682;CL:0000057!4.35e-12!75;CL:0000680!4.32e-10!57;CL:0000056!4.32e-10!57;CL:0000355!4.32e-10!57;CL:0000183!4.92e-10!59;CL:0000003!6.73e-10!722;CL:0000192!1.72e-09!42;CL:0000514!1.72e-09!42;CL:0000187!1.81e-09!54;CL:0000393!4.98e-09!60;CL:0000211!4.98e-09!60;CL:0000222!8.60e-09!119;CL:0002320!2.43e-08!365;CL:0000134!1.26e-07!358;CL:0000219!4.61e-07!390;CL:0000359!4.72e-07!32 | |ontology_enrichment_celltype=CL:0000055!1.48e-18!180;CL:0000144!7.61e-17!625;CL:0000048!7.92e-16!430;CL:0000723!4.94e-15!436;CL:0002371!5.42e-15!591;CL:0000034!9.53e-15!444;CL:0000548!1.40e-14!679;CL:0000004!1.40e-14!679;CL:0000255!1.40e-14!679;CL:0000012!7.67e-14!682;CL:0000057!4.35e-12!75;CL:0000680!4.32e-10!57;CL:0000056!4.32e-10!57;CL:0000355!4.32e-10!57;CL:0000183!4.92e-10!59;CL:0000003!6.73e-10!722;CL:0000192!1.72e-09!42;CL:0000514!1.72e-09!42;CL:0000187!1.81e-09!54;CL:0000393!4.98e-09!60;CL:0000211!4.98e-09!60;CL:0000222!8.60e-09!119;CL:0002320!2.43e-08!365;CL:0000134!1.26e-07!358;CL:0000219!4.61e-07!390;CL:0000359!4.72e-07!32 | ||
|ontology_enrichment_celltype_v019=CL:0000134;5.62e-14;55!CL:0000048;3.24e-12;58!CL:0000723;1.32e-11;61!CL:0000034;3.06e-09;69!CL:0002334;3.83e-09;12!CL:0002569;2.15e-07;6!CL:0002595;9.01e-07;5 | |ontology_enrichment_celltype_v019=CL:0000134;5.62e-14;55!CL:0000048;3.24e-12;58!CL:0000723;1.32e-11;61!CL:0000034;3.06e-09;69!CL:0002334;3.83e-09;12!CL:0002569;2.15e-07;6!CL:0002595;9.01e-07;5 | ||
|ontology_enrichment_celltype_v019_2=CL:0000048,4.24e-13,427;CL:0000057,1.28e-12,76;CL:0000723,1.68e-12,433;CL:0000034,3.67e-12,441;CL:0002320,5.82e-10,361;CL:0002334,1.82e-09,12;CL:0000134,6.07e-09,354;CL:0002569,9.67e-08,6;CL:0002595,4.92e-07,5;CL:0000219,6.27e-07,386 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:2394;1.35e-09;14 | |ontology_enrichment_disease_v019=DOID:2394;1.35e-09;14 | ||
|ontology_enrichment_disease_v019_2=DOID:2394,8.98e-10,14;DOID:120,8.52e-07,27 | |||
|ontology_enrichment_uberon=UBERON:0000914!6.33e-10!83;UBERON:0002329!6.33e-10!83;UBERON:0003077!6.33e-10!83;UBERON:0003059!6.33e-10!83;UBERON:0007282!6.33e-10!83;UBERON:0009618!6.33e-10!83;UBERON:0007285!6.33e-10!83;UBERON:0004290!5.24e-09!70;UBERON:0001134!8.83e-09!61;UBERON:0002036!8.83e-09!61;UBERON:0003082!8.83e-09!61;UBERON:0002385!2.95e-08!63;UBERON:0001015!2.95e-08!63;UBERON:0000383!2.95e-08!63;UBERON:0000486!9.91e-08!82;UBERON:0002384!1.23e-07!375;UBERON:0001637!2.85e-07!42;UBERON:0003509!2.85e-07!42;UBERON:0004572!2.85e-07!42 | |ontology_enrichment_uberon=UBERON:0000914!6.33e-10!83;UBERON:0002329!6.33e-10!83;UBERON:0003077!6.33e-10!83;UBERON:0003059!6.33e-10!83;UBERON:0007282!6.33e-10!83;UBERON:0009618!6.33e-10!83;UBERON:0007285!6.33e-10!83;UBERON:0004290!5.24e-09!70;UBERON:0001134!8.83e-09!61;UBERON:0002036!8.83e-09!61;UBERON:0003082!8.83e-09!61;UBERON:0002385!2.95e-08!63;UBERON:0001015!2.95e-08!63;UBERON:0000383!2.95e-08!63;UBERON:0000486!9.91e-08!82;UBERON:0002384!1.23e-07!375;UBERON:0001637!2.85e-07!42;UBERON:0003509!2.85e-07!42;UBERON:0004572!2.85e-07!42 | ||
|ontology_enrichment_uberon_v019=UBERON:0003104;1.04e-08;7!UBERON:0009142;1.04e-08;7!UBERON:0004457;3.89e-08;9!UBERON:0000042;3.89e-08;9!UBERON:0003688;1.11e-07;6!UBERON:0002358;1.11e-07;6!UBERON:0003684;1.11e-07;6!UBERON:0001178;1.11e-07;6!UBERON:0003422;2.15e-07;6!UBERON:0003834;9.01e-07;5!UBERON:0001533;9.01e-07;5 | |ontology_enrichment_uberon_v019=UBERON:0003104;1.04e-08;7!UBERON:0009142;1.04e-08;7!UBERON:0004457;3.89e-08;9!UBERON:0000042;3.89e-08;9!UBERON:0003688;1.11e-07;6!UBERON:0002358;1.11e-07;6!UBERON:0003684;1.11e-07;6!UBERON:0001178;1.11e-07;6!UBERON:0003422;2.15e-07;6!UBERON:0003834;9.01e-07;5!UBERON:0001533;9.01e-07;5 | ||
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|phase1_expression=0.726713517082227,4.28201047781966,1.55049844505568,1.0007329835313,4.46961094427288,5.23403114460221,2.53299878168311,0.631719873426831,0.261185628199839,0.491467873003018,0,0,0.791300934685361,0.123766352960047,1.32558950291166,2.6893005858071,4.21886169616784,2.19093027116212,0.975865597581014,0.369363174230364,0.612002073732759,0,0.286235987131057,0.410623275218653,0.376627918784408,0.305653622991805,0.164201178899891,0.157421562627358,0,0,0,0,0,1.10926203050036,0.0774672005803016,0.284338464974843,0.293600439334847,0.553995408531877,0.200544447470142,0,0,0.32389366601898,0,0.145398238779565,0.377875943688809,0,0.232429036905685,0,0,0,0.256160706529101,0.236482229888585,0,0,0,0.188242339542605,0.272906150057846,0,0,0,0,0,0,0.426224750532694,0.290209238628584,0,0,0.251248665256743,0,0,0,0,0,0.633765858935825,0.425208599930087,0,0.561643155732475,0.150176892841506,0.32145117339416,0.570025487482497,0,0.182664153764634,0,0,0,0.426730222566507,0.800791974072025,0.574752439954483,0,0,0.569212969109448,0,0,0,0,0,0,0,0,0.167186495390678,0.32592226663359,0,0,0.111410456885174,0.294605907474837,0,0.270803863765016,0.25618263945135,0.260118695119756,0.493313713811028,1.10540007114339,0,0.14828656316206,0.267540828089713,0,0.339928028092699,0,0,0,0,0,0,0,0.255973222308837,0,0,0,0,0.267440195783507,0,0,2.68280343881454,0.255725123687061,0.722878304769133,1.00267582127178,1.15877215168659,0.795285947051099,0.973269740605272,0.283604451492204,1.99556457716308,1.31752178539689,0.130979075497713,0,0,0.324547393654683,0.348259474598534,0.531831842075461,0,0,0,0,0.860234595106124,0,0,0,2.47606237746061,0.835979866147242,0.516833518338658,0,0,0.805658634218294,0.760272105718513,0.24406205754817,0.735326160691737,4.0507097394088,0.446498641420399,0,0,0,0.949265659568129,0.732806975721629,0,0,0,0,0.886413581652058,0.132409180813219,4.87622255272983,1.06400514659507,1.68203280042692,2.1349799145941,3.7000132262574,0.311211035399766,0.808264032418128,1.47115712802113,0.908144565869588,1.72852777344,0.234321431833797,0.936480230490962,0,0.448346041655403,0.23486899728753,0.161872944368132,0.842704840213491,0.61246251376468,1.47401180774122,0.309977343527296,1.18800285728205,3.70900393917835,0,2.15585442544872,0.168336113954066,0.625592599359821,0.277064115484183,0.438977620880838,3.0648779579902,1.05166641234618,0.907457465280168,2.15267562826634,0.427114777637135,1.05965950579781,2.70081986475962,1.13357782162283,1.28820270022815,0.558350568994769,1.68776332241266,0.779496041289589,1.51460264546469,0.644349290496095,0.80823028409406,4.26011511019937,1.0075209822764,0.169560592310488,0,0.272746120590835,0,0.365921118388786,0.132529768321485,0.580969714347592,0.207322110030741,1.00928340350251,0.36497735907583,0,4.5026865673502,1.38134921352481,1.85747171212792,1.44375896333917,0.354920400119532,0.168584690078102,0,0.992645754591546,0.871517776369625,0,0.539325232640658,0.392442930250692,1.53898862778556,1.4763109092493,0,0,2.94017422771084,0,0.982827216677626,0.590789906681404,0,0.122988438543114,0.686271241194102,0,0,0.301586917234893,0,0,0,2.88662684050547,0.231860809950154,0.117408694235822,0.433099343283221,0,0.570762456703795,0,0,0.246217006087397,0.234004265139238,0.297262324577456,0.93733833986777,0.16798212819886,0.141775097242386,0.0895585227028483,0,0,0,0,0,0.144119953416961,0,0.063497894292169,0,1.17217447210047,0,0.102827492703324,0.901029173531752,0.285826432630578,0.336393253036082,0.43596006883328,0.4400297149257,2.58543431515556,0,2.535908257668,0.797814349754612,0,0.257207374262142,1.41849132023278,1.3321108950805,1.14382394926518,2.17048642156577,1.64648067356154,0.325736184293735,0.710783897485092,1.58390374586686,0.301439377059586,0.871533458600294,0.199945982364114,0,0.502257091432126,0,1.91699884393266,1.14861935834114,0,1.15825045334063,2.67119219315498,0.179060963239896,0,0,0,0,0.254094624222463,0,0,0.167516265334349,0,0,0,0,0.736148950314839,1.00034104211935,0,2.07970861530807,4.10386674233472,1.10391690523754,0.468565659970853,0.300946099727719,0,0,0,0.553107505625109,0.781952530212746,1.17480694477644,1.37257369524342,0,0.215714200818617,0,0.303127571446259,0,1.20956117331872,1.48864684691266,1.2276957863045,6.17452207752762,1.28139149255701,3.58195074346692,1.76939313257968,0,1.69630663182921,1.59805552781814,0,2.59627214591811,1.16210378459959,0,0.802025881213139,0.0920809889358963,0.803701137152247,2.91345868810747,2.09799063935079,0,0.231046011313244,0,1.46139224653261,0.105551628892876,1.13733384070897,1.02056223165909,1.51141141271498,0,0.541892875087706,0,0,0,0.223874754722178,0,0.522870902049801,0.512900250232778,0.328014645699706,0.650756789328606,0.103041011647722,0.640986253728404,0.247528499761764,0,0.650060246036521,1.6068392984416,0.096670718292122,0.616194468458578,0.614014698904518,0.413509717453592,0.859361958946189,1.30515024522806,0.426133137080504,0.445160178233687,0.826424576804891,0.576570202095319,0.127612712494584,0.10115778085555,0,2.51849877464512,0.697037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| ||
|short_description=p@chr1:43224927..43224940,- | |short_description=p@chr1:43224927..43224940,- | ||
}} | }} |
Latest revision as of 08:21, 28 July 2015
Short description: | p@chr1:43224927..43224940, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:43224927..43224940, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 4.24e-13 | 427 |
fibroblast | 1.28e-12 | 76 |
somatic stem cell | 1.68e-12 | 433 |
stem cell | 3.67e-12 | 441 |
connective tissue cell | 5.82e-10 | 361 |
preadipocyte | 1.82e-09 | 12 |
mesenchymal cell | 6.07e-09 | 354 |
mesenchymal stem cell of umbilical cord | 9.67e-08 | 6 |
smooth muscle cell of the subclavian artery | 4.92e-07 | 5 |
motile cell | 6.27e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 1.75e-09 | 371 |
mesenchyme of umbilical cord | 9.67e-08 | 6 |
omentum | 1.04e-07 | 6 |
peritoneum | 1.04e-07 | 6 |
abdominal cavity | 1.04e-07 | 6 |
visceral peritoneum | 1.04e-07 | 6 |
thoracic segment blood vessel | 4.92e-07 | 5 |
subclavian artery | 4.92e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 8.98e-10 | 14 |
female reproductive organ cancer | 8.52e-07 | 27 |