FFCP PHASE1:Hg19::chr12:71551564..71551596,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7103 | |EntrezGene=7103 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11855 | |HGNC=11855 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=23bp_to_uc009zrt.1_5end | |association_with_transcript=23bp_to_uc009zrt.1_5end | ||
|cluster_id=chr12:71551564..71551596,- | |||
|coexpression_cluster_id=C25 | |coexpression_cluster_id=C25 | ||
|description=CAGE_peak_1_at_TSPAN8_5end | |description=CAGE_peak_1_at_TSPAN8_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:1000306;4.94e-10;4!CL:0002547;4.94e-10;4!CL:0002595;9.81e-09;5!CL:0002178;1.41e-08;3 | |ontology_enrichment_celltype_v019=CL:1000306;4.94e-10;4!CL:0002547;4.94e-10;4!CL:0002595;9.81e-09;5!CL:0002178;1.41e-08;3 | ||
|ontology_enrichment_celltype_v019_2=CL:1000306,3.84e-10,4;CL:0002547,3.84e-10,4;CL:0002595,9.82e-09,5;CL:0002178,1.39e-08,3 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004921!6.89e-16!129;UBERON:0004185!6.89e-16!129;UBERON:0007023!5.80e-15!115;UBERON:0001007!2.32e-13!155;UBERON:0001555!2.32e-13!155;UBERON:0007026!2.32e-13!155;UBERON:0000481!4.61e-13!347;UBERON:0004119!1.93e-11!169;UBERON:0000925!1.93e-11!169;UBERON:0006595!1.93e-11!169;UBERON:0003104!2.14e-11!238;UBERON:0009142!2.14e-11!238;UBERON:0005409!3.12e-11!35;UBERON:0000077!1.03e-10!130;UBERON:0000160!1.46e-09!27;UBERON:0000059!1.58e-09!11;UBERON:0002050!8.93e-09!605;UBERON:0005423!8.93e-09!605;UBERON:0004111!1.02e-08!241;UBERON:0000477!1.03e-08!286;UBERON:0000922!1.04e-08!612;UBERON:0000923!2.09e-08!604;UBERON:0005291!2.09e-08!604;UBERON:0006598!2.09e-08!604;UBERON:0002532!2.09e-08!604;UBERON:0000926!2.76e-08!448;UBERON:0004120!2.76e-08!448;UBERON:0006603!2.76e-08!448;UBERON:0001637!3.08e-08!42;UBERON:0003509!3.08e-08!42;UBERON:0004572!3.08e-08!42;UBERON:0000025!3.56e-08!194;UBERON:0001041!4.58e-08!98;UBERON:0000063!1.11e-07!97;UBERON:0004907!1.64e-07!5;UBERON:0001155!3.58e-07!9;UBERON:0000062!4.38e-07!511;UBERON:0000468!5.50e-07!659 | |ontology_enrichment_uberon=UBERON:0004921!6.89e-16!129;UBERON:0004185!6.89e-16!129;UBERON:0007023!5.80e-15!115;UBERON:0001007!2.32e-13!155;UBERON:0001555!2.32e-13!155;UBERON:0007026!2.32e-13!155;UBERON:0000481!4.61e-13!347;UBERON:0004119!1.93e-11!169;UBERON:0000925!1.93e-11!169;UBERON:0006595!1.93e-11!169;UBERON:0003104!2.14e-11!238;UBERON:0009142!2.14e-11!238;UBERON:0005409!3.12e-11!35;UBERON:0000077!1.03e-10!130;UBERON:0000160!1.46e-09!27;UBERON:0000059!1.58e-09!11;UBERON:0002050!8.93e-09!605;UBERON:0005423!8.93e-09!605;UBERON:0004111!1.02e-08!241;UBERON:0000477!1.03e-08!286;UBERON:0000922!1.04e-08!612;UBERON:0000923!2.09e-08!604;UBERON:0005291!2.09e-08!604;UBERON:0006598!2.09e-08!604;UBERON:0002532!2.09e-08!604;UBERON:0000926!2.76e-08!448;UBERON:0004120!2.76e-08!448;UBERON:0006603!2.76e-08!448;UBERON:0001637!3.08e-08!42;UBERON:0003509!3.08e-08!42;UBERON:0004572!3.08e-08!42;UBERON:0000025!3.56e-08!194;UBERON:0001041!4.58e-08!98;UBERON:0000063!1.11e-07!97;UBERON:0004907!1.64e-07!5;UBERON:0001155!3.58e-07!9;UBERON:0000062!4.38e-07!511;UBERON:0000468!5.50e-07!659 | ||
|ontology_enrichment_uberon_v019=UBERON:0005409;2.67e-23;22!UBERON:0004921;2.36e-18;33!UBERON:0000160;1.98e-16;17!UBERON:0000059;2.35e-11;11!UBERON:0004797;4.94e-10;4!UBERON:0000415;4.94e-10;4!UBERON:0007240;4.94e-10;4!UBERON:0005742;4.94e-10;4!UBERON:0005734;4.94e-10;4!UBERON:0004664;4.94e-10;4!UBERON:0004663;4.94e-10;4!UBERON:0000945;8.97e-09;5!UBERON:0010039;8.97e-09;5!UBERON:0003834;9.81e-09;5!UBERON:0001533;9.81e-09;5!UBERON:0004907;1.09e-08;5!UBERON:0004573;4.64e-08;33!UBERON:0004571;4.64e-08;33!UBERON:0001637;5.08e-08;42!UBERON:0003509;5.08e-08;42!UBERON:0004572;5.08e-08;42!UBERON:0001041;7.42e-08;14!UBERON:0001155;1.64e-07;9 | |ontology_enrichment_uberon_v019=UBERON:0005409;2.67e-23;22!UBERON:0004921;2.36e-18;33!UBERON:0000160;1.98e-16;17!UBERON:0000059;2.35e-11;11!UBERON:0004797;4.94e-10;4!UBERON:0000415;4.94e-10;4!UBERON:0007240;4.94e-10;4!UBERON:0005742;4.94e-10;4!UBERON:0005734;4.94e-10;4!UBERON:0004664;4.94e-10;4!UBERON:0004663;4.94e-10;4!UBERON:0000945;8.97e-09;5!UBERON:0010039;8.97e-09;5!UBERON:0003834;9.81e-09;5!UBERON:0001533;9.81e-09;5!UBERON:0004907;1.09e-08;5!UBERON:0004573;4.64e-08;33!UBERON:0004571;4.64e-08;33!UBERON:0001637;5.08e-08;42!UBERON:0003509;5.08e-08;42!UBERON:0004572;5.08e-08;42!UBERON:0001041;7.42e-08;14!UBERON:0001155;1.64e-07;9 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,4.08e-20,25;UBERON:0000160,2.00e-16,17;UBERON:0004921,3.72e-12,118;UBERON:0000059,2.37e-11,11;UBERON:0001007,6.20e-11,145;UBERON:0001555,6.20e-11,145;UBERON:0007026,6.20e-11,145;UBERON:0000415,3.84e-10,4;UBERON:0007240,3.84e-10,4;UBERON:0005742,3.84e-10,4;UBERON:0005734,3.84e-10,4;UBERON:0004664,3.84e-10,4;UBERON:0004663,3.84e-10,4;UBERON:0004573,1.03e-09,33;UBERON:0004571,1.03e-09,33;UBERON:0001637,1.95e-09,42;UBERON:0003509,1.95e-09,42;UBERON:0004572,1.95e-09,42;UBERON:0004119,3.99e-09,160;UBERON:0000925,3.99e-09,160;UBERON:0006595,3.99e-09,160;UBERON:0003834,9.82e-09,5;UBERON:0001533,9.82e-09,5;UBERON:0004907,1.11e-08,5;UBERON:0004797,2.25e-08,7;UBERON:0007500,1.53e-07,59;UBERON:0001981,1.53e-07,59;UBERON:0004537,1.53e-07,59;UBERON:0006965,1.53e-07,59;UBERON:0001155,1.63e-07,9;UBERON:0001046,2.64e-07,19 | |||
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| ||
|short_description=p1@TSPAN8 | |short_description=p1@TSPAN8 | ||
}} | }} |
Latest revision as of 16:35, 24 September 2015
Short description: | p1@TSPAN8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TSPAN8_5end |
Coexpression cluster: | C25_small_colon_temporal_duodenum_liver_Hepatocyte_gall |
Association with transcript: | 23bp_to_uc009zrt.1_5end |
EntrezGene: | TSPAN8 |
HGNC: | 11855 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast of tunica adventitia of artery | 3.84e-10 | 4 |
fibroblast of the aortic adventitia | 3.84e-10 | 4 |
smooth muscle cell of the subclavian artery | 9.82e-09 | 5 |
epithelial cell of stomach | 1.39e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system | 4.08e-20 | 25 |
intestine | 2.00e-16 | 17 |
subdivision of digestive tract | 3.72e-12 | 118 |
large intestine | 2.37e-11 | 11 |
digestive system | 6.20e-11 | 145 |
digestive tract | 6.20e-11 | 145 |
primitive gut | 6.20e-11 | 145 |
artery wall | 3.84e-10 | 4 |
tunica adventitia of artery | 3.84e-10 | 4 |
adventitia | 3.84e-10 | 4 |
tunica adventitia of blood vessel | 3.84e-10 | 4 |
aorta tunica adventitia | 3.84e-10 | 4 |
aorta wall | 3.84e-10 | 4 |
systemic artery | 1.03e-09 | 33 |
systemic arterial system | 1.03e-09 | 33 |
artery | 1.95e-09 | 42 |
arterial blood vessel | 1.95e-09 | 42 |
arterial system | 1.95e-09 | 42 |
endoderm-derived structure | 3.99e-09 | 160 |
endoderm | 3.99e-09 | 160 |
presumptive endoderm | 3.99e-09 | 160 |
thoracic segment blood vessel | 9.82e-09 | 5 |
subclavian artery | 9.82e-09 | 5 |
lower digestive tract | 1.11e-08 | 5 |
blood vessel layer | 2.25e-08 | 7 |
epithelial tube open at both ends | 1.53e-07 | 59 |
blood vessel | 1.53e-07 | 59 |
blood vasculature | 1.53e-07 | 59 |
vascular cord | 1.53e-07 | 59 |
colon | 1.63e-07 | 9 |
hindgut | 2.64e-07 | 19 |