FFCP PHASE1:Hg19::chr1:182992521..182992541,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3915 | |EntrezGene=3915 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6492 | |HGNC=6492 | ||
|TSSclassifier=strong | |||
|UniProt=P11047,Q6NVY8 | |UniProt=P11047,Q6NVY8 | ||
|association_with_transcript=-53bp_to_NM_002293,uc001gpx.2,uc001gpy.3_5end | |association_with_transcript=-53bp_to_NM_002293,uc001gpx.2,uc001gpy.3_5end | ||
|cluster_id=chr1:182992521..182992541,+ | |||
|coexpression_cluster_id=C1253 | |coexpression_cluster_id=C1253 | ||
|description=CAGE_peak_7_at_LAMC1_5end | |description=CAGE_peak_7_at_LAMC1_5end | ||
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|ontology_enrichment_celltype=CL:0000055!3.02e-22!180;CL:0000222!2.74e-15!119;CL:0000057!1.53e-13!75;CL:0000680!2.29e-13!57;CL:0000056!2.29e-13!57;CL:0000355!2.29e-13!57;CL:0000220!3.04e-13!246;CL:0002321!4.08e-13!248;CL:0000187!2.67e-12!54;CL:0000183!8.55e-12!59;CL:0000393!1.16e-10!60;CL:0000211!1.16e-10!60;CL:0000548!7.08e-09!679;CL:0000004!7.08e-09!679;CL:0000255!7.08e-09!679;CL:0000192!2.05e-08!42;CL:0000514!2.05e-08!42;CL:0000012!3.24e-08!682;CL:0000359!5.72e-08!32;CL:0000136!8.78e-08!15;CL:0002334!2.67e-07!12;CL:0000144!4.89e-07!625 | |ontology_enrichment_celltype=CL:0000055!3.02e-22!180;CL:0000222!2.74e-15!119;CL:0000057!1.53e-13!75;CL:0000680!2.29e-13!57;CL:0000056!2.29e-13!57;CL:0000355!2.29e-13!57;CL:0000220!3.04e-13!246;CL:0002321!4.08e-13!248;CL:0000187!2.67e-12!54;CL:0000183!8.55e-12!59;CL:0000393!1.16e-10!60;CL:0000211!1.16e-10!60;CL:0000548!7.08e-09!679;CL:0000004!7.08e-09!679;CL:0000255!7.08e-09!679;CL:0000192!2.05e-08!42;CL:0000514!2.05e-08!42;CL:0000012!3.24e-08!682;CL:0000359!5.72e-08!32;CL:0000136!8.78e-08!15;CL:0002334!2.67e-07!12;CL:0000144!4.89e-07!625 | ||
|ontology_enrichment_celltype_v019=CL:0000134;4.58e-10;55!CL:0000048;6.83e-10;58!CL:0000723;1.10e-09;61!CL:0002334;4.35e-09;12!CL:0000136;1.66e-08;13!CL:0000359;2.49e-08;32!CL:0000187;2.55e-08;55!CL:0000192;1.72e-07;43!CL:0002494;2.80e-07;16!CL:0000393;4.38e-07;61!CL:0000211;4.38e-07;61 | |ontology_enrichment_celltype_v019=CL:0000134;4.58e-10;55!CL:0000048;6.83e-10;58!CL:0000723;1.10e-09;61!CL:0002334;4.35e-09;12!CL:0000136;1.66e-08;13!CL:0000359;2.49e-08;32!CL:0000187;2.55e-08;55!CL:0000192;1.72e-07;43!CL:0002494;2.80e-07;16!CL:0000393;4.38e-07;61!CL:0000211;4.38e-07;61 | ||
|ontology_enrichment_celltype_v019_2=CL:0000680,1.67e-16,58;CL:0000056,1.67e-16,58;CL:0000355,1.67e-16,58;CL:0000187,3.74e-15,55;CL:0000057,5.15e-14,76;CL:0000222,1.21e-13,121;CL:0000393,8.99e-13,61;CL:0000211,8.99e-13,61;CL:0000048,2.32e-10,427;CL:0000192,2.97e-10,43;CL:0000514,2.97e-10,43;CL:0000723,1.58e-09,433;CL:0000136,1.92e-09,15;CL:0000359,7.72e-09,32;CL:0002334,7.82e-09,12;CL:0000034,1.75e-08,441;CL:0002321,4.49e-08,250;CL:0002494,2.56e-07,16 | |||
|ontology_enrichment_development_v019=CL:0000355;2.36e-08;58!CL:0000514;1.72e-07;43 | |ontology_enrichment_development_v019=CL:0000355;2.36e-08;58!CL:0000514;1.72e-07;43 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:2394;2.49e-07;14 | |ontology_enrichment_disease_v019=DOID:2394;2.49e-07;14 | ||
|ontology_enrichment_disease_v019_2=DOID:2394,1.53e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0002100!6.76e-15!216;UBERON:0003104!4.53e-14!238;UBERON:0009142!4.53e-14!238;UBERON:0005256!1.16e-12!143;UBERON:0000914!3.66e-12!83;UBERON:0002329!3.66e-12!83;UBERON:0003077!3.66e-12!83;UBERON:0003059!3.66e-12!83;UBERON:0007282!3.66e-12!83;UBERON:0009618!3.66e-12!83;UBERON:0007285!3.66e-12!83;UBERON:0001134!1.04e-11!61;UBERON:0002036!1.04e-11!61;UBERON:0003082!1.04e-11!61;UBERON:0004872!1.51e-11!84;UBERON:0004290!1.95e-11!70;UBERON:0002385!2.02e-11!63;UBERON:0001015!2.02e-11!63;UBERON:0000383!2.02e-11!63;UBERON:0002049!2.31e-10!79;UBERON:0007798!2.31e-10!79;UBERON:0000486!2.88e-10!82;UBERON:0001637!3.29e-10!42;UBERON:0003509!3.29e-10!42;UBERON:0004572!3.29e-10!42;UBERON:0003914!3.57e-10!118;UBERON:0000468!5.97e-10!659;UBERON:0000926!6.56e-10!448;UBERON:0004120!6.56e-10!448;UBERON:0006603!6.56e-10!448;UBERON:0004573!8.93e-10!33;UBERON:0004571!8.93e-10!33;UBERON:0001009!6.78e-09!113;UBERON:0000490!7.21e-09!138;UBERON:0000475!7.80e-09!365;UBERON:0000055!9.83e-09!69;UBERON:0004535!1.49e-08!110;UBERON:0000481!3.82e-08!347;UBERON:0001981!4.94e-08!60;UBERON:0007500!4.94e-08!60;UBERON:0004537!4.94e-08!60;UBERON:0006965!4.94e-08!60;UBERON:0004923!8.68e-08!57;UBERON:0000467!1.26e-07!625;UBERON:0000480!1.98e-07!626;UBERON:0003102!3.69e-07!95;UBERON:0005156!8.02e-07!59;UBERON:0000990!8.02e-07!59 | |ontology_enrichment_uberon=UBERON:0002100!6.76e-15!216;UBERON:0003104!4.53e-14!238;UBERON:0009142!4.53e-14!238;UBERON:0005256!1.16e-12!143;UBERON:0000914!3.66e-12!83;UBERON:0002329!3.66e-12!83;UBERON:0003077!3.66e-12!83;UBERON:0003059!3.66e-12!83;UBERON:0007282!3.66e-12!83;UBERON:0009618!3.66e-12!83;UBERON:0007285!3.66e-12!83;UBERON:0001134!1.04e-11!61;UBERON:0002036!1.04e-11!61;UBERON:0003082!1.04e-11!61;UBERON:0004872!1.51e-11!84;UBERON:0004290!1.95e-11!70;UBERON:0002385!2.02e-11!63;UBERON:0001015!2.02e-11!63;UBERON:0000383!2.02e-11!63;UBERON:0002049!2.31e-10!79;UBERON:0007798!2.31e-10!79;UBERON:0000486!2.88e-10!82;UBERON:0001637!3.29e-10!42;UBERON:0003509!3.29e-10!42;UBERON:0004572!3.29e-10!42;UBERON:0003914!3.57e-10!118;UBERON:0000468!5.97e-10!659;UBERON:0000926!6.56e-10!448;UBERON:0004120!6.56e-10!448;UBERON:0006603!6.56e-10!448;UBERON:0004573!8.93e-10!33;UBERON:0004571!8.93e-10!33;UBERON:0001009!6.78e-09!113;UBERON:0000490!7.21e-09!138;UBERON:0000475!7.80e-09!365;UBERON:0000055!9.83e-09!69;UBERON:0004535!1.49e-08!110;UBERON:0000481!3.82e-08!347;UBERON:0001981!4.94e-08!60;UBERON:0007500!4.94e-08!60;UBERON:0004537!4.94e-08!60;UBERON:0006965!4.94e-08!60;UBERON:0004923!8.68e-08!57;UBERON:0000467!1.26e-07!625;UBERON:0000480!1.98e-07!626;UBERON:0003102!3.69e-07!95;UBERON:0005156!8.02e-07!59;UBERON:0000990!8.02e-07!59 | ||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.16e-08;33!UBERON:0004571;1.16e-08;33!UBERON:0004457;1.55e-07;9!UBERON:0000042;1.55e-07;9!UBERON:0001637;7.17e-07;42!UBERON:0003509;7.17e-07;42!UBERON:0004572;7.17e-07;42!UBERON:0000948;9.98e-07;22 | |ontology_enrichment_uberon_v019=UBERON:0004573;1.16e-08;33!UBERON:0004571;1.16e-08;33!UBERON:0004457;1.55e-07;9!UBERON:0000042;1.55e-07;9!UBERON:0001637;7.17e-07;42!UBERON:0003509;7.17e-07;42!UBERON:0004572;7.17e-07;42!UBERON:0000948;9.98e-07;22 | ||
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|phase1_expression=6.7221000330106,6.20891519283851,4.93340414335899,5.00366491765652,11.1740273606822,6.10636966870258,5.06599756336621,1.26343974685366,3.91778442299758,0.737201809504527,0,2.40285509343189,1.58260186937072,1.11389717664042,4.30816588446291,2.01697543935533,1.20538905604795,2.92124036154949,2.43966399395253,0.984968464614303,1.02000345622126,0.313454721478088,0.572471974262113,0.547497700291537,0.376627918784408,0.152826811495903,0.0821005894499457,0.0787107813136792,0,0,0,0,0.90361775633475,0.369754010166788,0,0,0,0,0,0,0.447830948479849,0,0.515151135268373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0.400395987036012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.31420598941885,3.35350429851818,3.19656404608826,4.3372698286148,1.50401373190767,1.73815822752988,0.795285947051099,0.486634870302636,1.41802225746102,2.88248216701333,0.790513071238134,0.785874452986276,0.728590576585084,0,0,0.174129737299267,0,0,0,0,0.79504962946682,1.72046919021225,0.347140501607594,2.26123176769604,1.67799774483962,1.6507082516404,0.208994966536811,2.06733407335463,1.77883131343355,1.67360306382335,0.805658634218294,0,1.95249646038536,2.57364156242108,0.81014194788176,0.714397826272638,0.22452937262617,0.675668882899933,0,0,0.732806975721629,0,0,0.872188104285069,1.49091585508596,1.64619665163954,6.75286822147416,23.5206029014027,3.19201543978521,0.560677600142307,0,2.71334303258876,5.60179863719579,2.82892411346345,2.61539044981534,4.23800797405808,2.88087962239999,0.468642863667593,1.24864030732128,1.1409436430889,1.34503812496621,1.40921398372518,0.323745888736263,0.280901613404497,1.42907919878425,0.982674538494144,2.37649296704261,0,1.48360157567134,0.910161361938026,2.87447256726495,0.168336113954066,0.750711119231785,1.6623846929051,2.19488810440419,2.75839016219118,5.70904623845068,1.13432183160021,5.56107870635472,2.56268866582281,3.60284231971255,5.40163972951924,1.13357782162283,5.66809188100384,1.8611685633159,5.73839529620305,2.92311015483596,3.78650661366172,3.03764665519588,2.42469085228218,10.2952781829818,2.21654616100809,1.18692414617341,0.57978255948989,0.545492241181669,0.286804595389004,0.121973706129595,0.927708378250397,0.813357600086629,0.621966330092223,0.504641701751257,0,1.56449532329816,3.21620469096443,0,2.78620756819187,5.0531563716871,1.18306800039844,0.505754070234305,1.20505514941741,0.772057809126758,1.30727666455444,1.66089433377768,1.34831308160164,0.588664395376038,0.769494313892781,1.4763109092493,1.40241773803446,0.4115740113314,4.41026134156626,0,0,1.18157981336281,0,1.59884970106048,1.88724591328378,0.548751427043128,0,0.301586917234893,0.277765335475589,0,0,0,0.927443239800615,4.3441216867254,1.58803092537181,1.38895653772983,0.951270761172991,0,0,0,0,0.445893486866185,0,1.17587489739202,0.283550194484773,0.53735113621709,1.45316969256981,0.383382679165211,0,0,0,0,0,0.317489471460845,0.381988425558278,0,1.71072446022705,0.308482478109971,0,1.14330573052231,1.90622843387113,0.87192013766656,1.1734125731352,1.68053230485111,3.57656445851882,0.845302752556,2.12750493267896,1.04007436911366,0,1.41849132023278,0.799266537048298,4.86125178437702,3.25572963234866,1.64648067356154,1.30294473717494,4.97548728239564,0.791951872933429,2.1100756394171,2.61460037580088,1.59956785891291,0,0,2.10833939483032,4.31324739884849,4.59447743336456,2.85273810081437,3.61953266668948,2.67119219315498,2.50685348535854,0,0,0,0,1.01637849688985,2.60279707715243,0,0.167516265334349,1.91381625495949,0,0,0,1.96306386750624,2.00068208423871,0.813795071099207,3.74347550755453,3.03329280955175,3.6271555457805,5.85707074963566,1.80567659836631,0,2.0694614258501,1.99267679560631,0.553107505625109,2.5196248195744,0.587403472388222,0.686286847621712,0.206768026122887,0,0,0.909382714338778,1.66435439510497,0,4.71404834855676,5.52463103837025,5.05188169979532,6.79137491055215,4.09365799253363,4.66476371316462,1.48418066444991,2.00472601943452,4.08391968220192,3.12083192852475,4.67328986265259,5.22946703069817,1.57117284469109,2.00506470303285,2.3941057123333,1.7222167224691,1.63882051206045,5.11385218341754,0.451199612907412,1.15523005656622,0.784349769176855,0,0.211103257785751,5.68666920354483,1.36074964221213,2.15915916102139,3.08454505380579,0.812839312631559,0.501689773854853,0.764628819135115,0.831076008928724,1.11937377361089,0,0,0.512900250232778,0.984043937099117,0.976135183992909,1.64865618636356,0.457847324091717,0.41254749960294,0.574265537996172,0,4.82051789532479,1.93341436584244,3.23502095940753,3.22357716924872,1.92971201478343,2.57808587683857,1.45016693914229,1.96021243057032,2.67096106940212,1.4875642382488,0.960950336825531,1.27612712494584,1.92199783625545,3.71876439437829,14.4813679542094,1.3940745403212,0.924100740528266,1.59691809095107,2.60979897622522,2.59453906745488,3.00562262158182,0,1.89827654831236,3.62197368455267,0.511795582622668,3.85145089230528,2.86382923133343,3.13979456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| ||
|short_description=p7@LAMC1 | |short_description=p7@LAMC1 | ||
}} | }} |
Latest revision as of 01:45, 19 September 2015
Short description: | p7@LAMC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_LAMC1_5end |
Coexpression cluster: | C1253_Fibroblast_Smooth_Cardiac_Mesenchymal_Adipocyte_mesenchymal_Wilms |
Association with transcript: | -53bp_to_NM_002293, uc001gpx.2, uc001gpy.3_5end |
EntrezGene: | LAMC1 |
HGNC: | 6492 |
UniProt: | P11047Q6NVY8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 1.67e-16 | 58 |
myoblast | 1.67e-16 | 58 |
multi-potent skeletal muscle stem cell | 1.67e-16 | 58 |
muscle cell | 3.74e-15 | 55 |
fibroblast | 5.15e-14 | 76 |
mesodermal cell | 1.21e-13 | 121 |
electrically responsive cell | 8.99e-13 | 61 |
electrically active cell | 8.99e-13 | 61 |
multi fate stem cell | 2.32e-10 | 427 |
smooth muscle cell | 2.97e-10 | 43 |
smooth muscle myoblast | 2.97e-10 | 43 |
somatic stem cell | 1.58e-09 | 433 |
fat cell | 1.92e-09 | 15 |
vascular associated smooth muscle cell | 7.72e-09 | 32 |
preadipocyte | 7.82e-09 | 12 |
stem cell | 1.75e-08 | 441 |
embryonic cell | 4.49e-08 | 250 |
cardiocyte | 2.56e-07 | 16 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.53e-07 | 14 |