FFCP PHASE1:Hg19::chr10:5446786..5446795,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79861 | |EntrezGene=79861 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23534 | |HGNC=23534 | ||
|TSSclassifier=strong | |||
|UniProt=A6NHL2 | |UniProt=A6NHL2 | ||
|association_with_transcript=0bp_to_ENST00000380419,ENST00000479328,NM_001171864,NM_024803,uc001ihy.2,uc001ihz.2_5end | |association_with_transcript=0bp_to_ENST00000380419,ENST00000479328,NM_001171864,NM_024803,uc001ihy.2,uc001ihz.2_5end | ||
|cluster_id=chr10:5446786..5446795,- | |||
|coexpression_cluster_id=C25 | |coexpression_cluster_id=C25 | ||
|description=CAGE_peak_1_at_TUBAL3_5end | |description=CAGE_peak_1_at_TUBAL3_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000307;1.90e-09;3!CL:0002202;7.26e-07;9!CL:0002632;7.26e-07;9 | |ontology_enrichment_celltype_v019=CL:0000307;1.90e-09;3!CL:0002202;7.26e-07;9!CL:0002632;7.26e-07;9 | ||
|ontology_enrichment_celltype_v019_2=CL:0000068,2.03e-09,3;CL:0000069,2.03e-09,3;CL:0000307,2.03e-09,3;CL:0000377,2.03e-09,3;CL:0002202,6.69e-07,9;CL:0002632,6.69e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000377;1.90e-09;3 | |ontology_enrichment_development_v019=CL:0000377;1.90e-09;3 | ||
|ontology_enrichment_disease=DOID:1036!1.58e-07!8 | |ontology_enrichment_disease=DOID:1036!1.58e-07!8 | ||
|ontology_enrichment_disease_v019=DOID:1036;2.67e-20;8!DOID:8692;2.83e-07;31 | |ontology_enrichment_disease_v019=DOID:1036;2.67e-20;8!DOID:8692;2.83e-07;31 | ||
|ontology_enrichment_disease_v019_2=DOID:1036,3.02e-20,8;DOID:1240,2.84e-07,39;DOID:8692,5.20e-07,31 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.24e-08!115 | |ontology_enrichment_uberon=UBERON:0007023!2.24e-08!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0000160;1.10e-17;17!UBERON:0005409;1.19e-13;22!UBERON:0002108;5.75e-13;4!UBERON:0004921;3.36e-08;33!UBERON:0002135;1.39e-07;1!UBERON:0001155;2.44e-07;9 | |ontology_enrichment_uberon_v019=UBERON:0000160;1.10e-17;17!UBERON:0005409;1.19e-13;22!UBERON:0002108;5.75e-13;4!UBERON:0004921;3.36e-08;33!UBERON:0002135;1.39e-07;1!UBERON:0001155;2.44e-07;9 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.08e-17,17;UBERON:0002108,5.87e-13,4;UBERON:0005409,5.59e-12,25;UBERON:0002135,1.44e-07,1;UBERON:0001155,2.44e-07,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487932798790507,0,0,0,0,0,0,0.152826811495903,0,0.0787107813136792,0,0,0,1.83884244895785,0.6024118375565,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.954053754535364,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.33996642519167,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0,0,0.258416759169329,0,0,0,0.760272105718513,0,0,0,0,0,0.112611480483322,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,1.06748995729705,0,0,0.134710672069688,0,0,0,0,0,0,0,0.117434498643765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.68965315629341,0,1.31700342490351,0,1.80952150340936,0.370353780634118,0,0,0,0,0,0,0.462985512576611,0,0,0,0,0,0,0.93733833986777,0.16798212819886,0.425325291727159,0,0,0.766765358330422,0,0,0,0,0,0,0.381988425558278,0,0,0,0,0.285826432630578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.519254429183621,0,0.241718899183244,0.200506470303285,0.0920809889358963,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0,0,0,0.574265537996172,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0.384380134730212,0,0,0,0,0,0.616067160352178,0,0,0,0,0,0,0,0,0,0,1.56989728039846,0,0,0,0,0,0.421258456238981,0,0.487426979262569,0,0,0,0,0,0,0,0,0,0,0,0.563391205064483,0,0,0,0,0,0,0,0,0,2.68120910214315,1.08890984861323,0.0941438007767792,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.956557636372934,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4098700508785,8.79560539918633,0,0,1.44876399560722,0,0,0,0,0,0.140669416410513,0,0,0,0.19924798825107,0.552567831062295,1.51159648712566,0,0,0,0,0.358042349351218,0,0,0,0,0,0.0927680981618513,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0897576444097721,0,0,0,0,0,0,0.664846727600626,2.03036094555463,3.13700054908383,2.3495022176618,3.98482838720789,0.635746315921515,0,0,0,0,4.97630965539252,15.126243530071,10.9985426088053,0,0,0,0,0,0,0,0,0,0,13.308978765353,0,0,0,0,0,0,0,0,0,0,0.173559738335131,0.293977192243133,0,0,0,0.0967563312890851,0.292357268344742,0,0.290967049465258,0,0.225980740780532,0.137041924646751,0.794858446811959,0.0633107959558787,0,0.320635281006135,0.213452994739353,0,0.432271251462318,0,0,0.720273989940749,0,0,0,0,0,0,0,0.410716136675979,0,0,0.262887354279314,1.39641200636127,0.229160424011684,0,0,0.429226048136571,0.223171457441873,0.134366944973453,0,0,0.0787831823072236,0,0.0674035438541849,0,0.0846733320657845,0,0,0,0,0,0,0,0.0607495566580247,0,3.15222829196793,0.262272940674991,0,0.35857467866569,0,0,0,0,0,0,0,0,2.05231301873347,0,0,0,0,0.646414781807753,0,3.25064991980226,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,0.488105059607853,0.625954653532499,0,0,0.18628920882415,0,0.249960815924213,0,0,0,0,0,0,0,0.554805861502613,0,0,0,0,0,0,0,0.477890301491107,0,0,0,0,0,0.300515217994437,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0,0.256241518587947,0,0.607719912354764,0,0,0,0,0,0.245772908753719,0.211312123358627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205116364240755,0,0,0,0,0,0.11796972334774,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0.620060389503552,0,0,0,0.992422356778588,0,0,0,0.336283722218824,0,0,0,0,0,0.203909198930495,0,0,0,0.078493092850514,0,0,0.913158720509496,0.215927591218621,2.8665101273223,0,0,0,0,0,0,0,0,0,0,0.0852134047591577,0,0,0.31020638566432,0,0,0,0.487671699929078,0,0,0,0,0,0,0,0,0,0,36.1175059945181,22.5116347319076,0,0,0,0,0.297046400327086,0,0,0,0,0,0.178553938605658,0.352894871715692,0,0,0,0.430018749454354,0,0,0,8.46442944824641,0,0,0,0,0,0,0,0,0,0,0.303114792872958,1.07185652062471,0,0.103432995861895,0.426467963801962,0,0,0.0620747142958579,0,0,0,1.08858373948481,0.684466602170562,0.0673520530145875,0.0717222053926763,0,0.0814032686109745,0,0,0,0,0.244482888365733,0,0,0.805095174364105,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487932798790507,0,0,0,0,0,0,0.152826811495903,0,0.0787107813136792,0,0,0,1.83884244895785,0.6024118375565,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.954053754535364,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.33996642519167,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0,0,0.258416759169329,0,0,0,0.760272105718513,0,0,0,0,0,0.112611480483322,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,1.06748995729705,0,0,0.134710672069688,0,0,0,0,0,0,0,0.117434498643765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.68965315629341,0,1.31700342490351,0,1.80952150340936,0.370353780634118,0,0,0,0,0,0,0.462985512576611,0,0,0,0,0,0,0.93733833986777,0.16798212819886,0.425325291727159,0,0,0.766765358330422,0,0,0,0,0,0,0.381988425558278,0,0,0,0,0.285826432630578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.519254429183621,0,0.241718899183244,0.200506470303285,0.0920809889358963,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0,0,0,0.574265537996172,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0.384380134730212,0,0,0,0,0,0.616067160352178,0,0,0,0,0,0,0,0,0,0,1.56989728039846,0,0,0,0,0,0.421258456238981,0,0.487426979262569,0,0,0,0,0,0,0,0,0,0,0,0.563391205064483,0,0,0,0,0,0,0,0,0,2.68120910214315,1.08890984861323,0.0941438007767792,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.956557636372934,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4098700508785,8.79560539918633,0,0,1.44876399560722,0,0,0,0,0,0.140669416410513,0,0,0,0.19924798825107,0.552567831062295,1.51159648712566,0,0,0,0,0.358042349351218,0,0,0,0,0,0.0927680981618513,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0897576444097721,0,0,0,0,0,0,0.664846727600626,2.03036094555463,3.13700054908383,2.3495022176618,3.98482838720789,0.635746315921515,0,0,0,0,4.97630965539252,15.126243530071,10.9985426088053,0,0,0,0,0,0,0,0,0,0,13.308978765353,0,0,0,0,0,0,0,0,0,0,0.173559738335131,0.293977192243133,0,0,0,0.0967563312890851,0.292357268344742,0,0.290967049465258,0,0.225980740780532,0.137041924646751,0.794858446811959,0.0633107959558787,0,0.320635281006135,0.213452994739353,0,0.432271251462318,0,0,0.720273989940749,0,0,0,0,0,0,0,0.410716136675979,0,0,0.262887354279314,1.39641200636127,0.229160424011684,0,0,0.429226048136571,0.223171457441873,0.134366944973453,0,0,0.0787831823072236,0,0.0674035438541849,0,0.0846733320657845,0,0,0,0,0,0,0,0.0607495566580247,0,3.15222829196793,0.262272940674991,0,0.35857467866569,0,0,0,0,0,0,0,0,2.05231301873347,0,0,0,0,0.646414781807753,0,3.25064991980226,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,0.488105059607853,0.625954653532499,0,0,0.18628920882415,0,0.249960815924213,0,0,0,0,0,0,0,0.554805861502613,0,0,0,0,0,0,0,0.477890301491107,0,0,0,0,0,0.300515217994437,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0,0.256241518587947,0,0.607719912354764,0,0,0,0,0,0.245772908753719,0.211312123358627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205116364240755,0,0,0,0,0,0.11796972334774,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0.620060389503552,0,0,0,0.992422356778588,0,0,0,0.336283722218824,0,0,0,0,0,0.203909198930495,0,0,0,0.078493092850514,0,0,0.913158720509496,0.215927591218621,2.8665101273223,0,0,0,0,0,0,0,0,0,0,0.0852134047591577,0,0,0.31020638566432,0,0,0,0.487671699929078,0,0,0,0,0,0,0,0,0,0,36.1175059945181,22.5116347319076,0,0,0,0,0.297046400327086,0,0,0,0,0,0.178553938605658,0.352894871715692,0,0,0,0.430018749454354,0,0,0,8.46442944824641,0,0,0,0,0,0,0,0,0,0,0.303114792872958,1.07185652062471,0,0.103432995861895,0.426467963801962,0,0,0.0620747142958579,0,0,0,1.08858373948481,0.684466602170562,0.0673520530145875,0.0717222053926763,0,0.0814032686109745,0,0,0,0,0.244482888365733,0,0,0.805095174364105,0 | ||
|short_description=p1@TUBAL3 | |short_description=p1@TUBAL3 | ||
}} | }} |
Latest revision as of 12:40, 18 September 2015
Short description: | p1@TUBAL3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TUBAL3_5end |
Coexpression cluster: | C25_small_colon_temporal_duodenum_liver_Hepatocyte_gall |
Association with transcript: | 0bp_to_ENST00000380419, ENST00000479328, NM_001171864, NM_024803, uc001ihy.2, uc001ihz.2_5end |
EntrezGene: | TUBAL3 |
HGNC: | 23534 |
UniProt: | A6NHL2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
duct epithelial cell | 2.03e-09 | 3 |
branched duct epithelial cell | 2.03e-09 | 3 |
tracheal epithelial cell | 2.03e-09 | 3 |
tracheoblast | 2.03e-09 | 3 |
epithelial cell of tracheobronchial tree | 6.69e-07 | 9 |
epithelial cell of lower respiratory tract | 6.69e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
intestine | 1.08e-17 | 17 |
small intestine | 5.87e-13 | 4 |
gastrointestinal system | 5.59e-12 | 25 |
mitral valve | 1.44e-07 | 1 |
colon | 2.44e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
chronic leukemia | 3.02e-20 | 8 |
leukemia | 2.84e-07 | 39 |
myeloid leukemia | 5.20e-07 | 31 |