FFCP PHASE1:Hg19::chr20:35178101..35178139,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr20:35178101..35178139,- | |||
|coexpression_cluster_id=C384 | |coexpression_cluster_id=C384 | ||
|description=CAGE_peak_at_chr20:35178101..35178139,- | |description=CAGE_peak_at_chr20:35178101..35178139,- | ||
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|ontology_enrichment_celltype=CL:0000055!3.05e-20!180;CL:0000057!2.86e-13!75;CL:0000680!3.23e-11!57;CL:0000056!3.23e-11!57;CL:0000355!3.23e-11!57;CL:0000183!7.72e-11!59;CL:0000187!2.23e-10!54;CL:0000192!4.80e-10!42;CL:0000514!4.80e-10!42;CL:0000393!7.11e-10!60;CL:0000211!7.11e-10!60;CL:0000222!1.17e-07!119;CL:0000359!3.84e-07!32 | |ontology_enrichment_celltype=CL:0000055!3.05e-20!180;CL:0000057!2.86e-13!75;CL:0000680!3.23e-11!57;CL:0000056!3.23e-11!57;CL:0000355!3.23e-11!57;CL:0000183!7.72e-11!59;CL:0000187!2.23e-10!54;CL:0000192!4.80e-10!42;CL:0000514!4.80e-10!42;CL:0000393!7.11e-10!60;CL:0000211!7.11e-10!60;CL:0000222!1.17e-07!119;CL:0000359!3.84e-07!32 | ||
|ontology_enrichment_celltype_v019=CL:0002334;3.75e-08;12!CL:0000192;7.12e-07;43 | |ontology_enrichment_celltype_v019=CL:0002334;3.75e-08;12!CL:0000192;7.12e-07;43 | ||
|ontology_enrichment_celltype_v019_2=CL:0000057,5.12e-10,76;CL:0000192,2.64e-09,43;CL:0000514,2.64e-09,43;CL:0000680,8.72e-09,58;CL:0000056,8.72e-09,58;CL:0000355,8.72e-09,58;CL:0002334,3.58e-08,12;CL:0000187,8.19e-08,55 | |||
|ontology_enrichment_development_v019=CL:0000514;7.12e-07;43 | |ontology_enrichment_development_v019=CL:0000514;7.12e-07;43 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!1.85e-13!143;UBERON:0000914!1.73e-12!83;UBERON:0002329!1.73e-12!83;UBERON:0003077!1.73e-12!83;UBERON:0003059!1.73e-12!83;UBERON:0007282!1.73e-12!83;UBERON:0009618!1.73e-12!83;UBERON:0007285!1.73e-12!83;UBERON:0002385!4.53e-12!63;UBERON:0001015!4.53e-12!63;UBERON:0000383!4.53e-12!63;UBERON:0004290!7.73e-12!70;UBERON:0001134!2.58e-11!61;UBERON:0002036!2.58e-11!61;UBERON:0003082!2.58e-11!61;UBERON:0000481!3.26e-10!347;UBERON:0000486!4.44e-10!82;UBERON:0002100!7.51e-10!216;UBERON:0000468!2.16e-09!659;UBERON:0003104!5.07e-09!238;UBERON:0009142!5.07e-09!238;UBERON:0000926!2.00e-07!448;UBERON:0004120!2.00e-07!448;UBERON:0006603!2.00e-07!448;UBERON:0001009!4.28e-07!113;UBERON:0007100!5.31e-07!27 | |ontology_enrichment_uberon=UBERON:0005256!1.85e-13!143;UBERON:0000914!1.73e-12!83;UBERON:0002329!1.73e-12!83;UBERON:0003077!1.73e-12!83;UBERON:0003059!1.73e-12!83;UBERON:0007282!1.73e-12!83;UBERON:0009618!1.73e-12!83;UBERON:0007285!1.73e-12!83;UBERON:0002385!4.53e-12!63;UBERON:0001015!4.53e-12!63;UBERON:0000383!4.53e-12!63;UBERON:0004290!7.73e-12!70;UBERON:0001134!2.58e-11!61;UBERON:0002036!2.58e-11!61;UBERON:0003082!2.58e-11!61;UBERON:0000481!3.26e-10!347;UBERON:0000486!4.44e-10!82;UBERON:0002100!7.51e-10!216;UBERON:0000468!2.16e-09!659;UBERON:0003104!5.07e-09!238;UBERON:0009142!5.07e-09!238;UBERON:0000926!2.00e-07!448;UBERON:0004120!2.00e-07!448;UBERON:0006603!2.00e-07!448;UBERON:0001009!4.28e-07!113;UBERON:0007100!5.31e-07!27 | ||
|ontology_enrichment_uberon_v019=UBERON:0004457;8.23e-08;9!UBERON:0000042;8.23e-08;9 | |ontology_enrichment_uberon_v019=UBERON:0004457;8.23e-08;9!UBERON:0000042;8.23e-08;9 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,4.93e-14,160;UBERON:0009142,4.93e-14,160;UBERON:0005256,8.81e-13,122;UBERON:0007503,5.41e-10,78;UBERON:0000926,6.01e-10,315;UBERON:0004120,6.01e-10,315;UBERON:0006603,6.01e-10,315;UBERON:0002385,8.97e-10,64;UBERON:0001015,8.97e-10,64;UBERON:0000383,8.97e-10,64;UBERON:0002100,1.56e-09,199;UBERON:0007524,1.84e-09,73;UBERON:0002329,3.55e-09,71;UBERON:0003059,3.55e-09,71;UBERON:0007282,3.55e-09,71;UBERON:0004290,3.55e-09,71;UBERON:0009618,3.55e-09,71;UBERON:0001134,6.47e-09,62;UBERON:0002036,6.47e-09,62;UBERON:0003082,6.47e-09,62;UBERON:0003077,6.93e-09,72;UBERON:0007285,6.93e-09,72;UBERON:0000486,8.15e-08,83;UBERON:0003064,1.24e-07,28 | |||
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|phase1_expression=9.81063248061006,7.49351833618441,7.04772020479856,8.00586386825043,12.5149106439641,11.3404008133048,35.4619829435635,0.631719873426831,1.82829939739887,2.94880723801811,6.28021051175185,0,0.791300934685361,0.37129905888014,1.32558950291166,6.72325146451775,6.02694528023977,10.2243412654232,5.85519358548608,0,0.408001382488506,4.07491137921514,0.572471974262113,0.410623275218653,1.75759695432724,0,0,0,0.393364276848904,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,2.9408389224012,3.97583067623023,1.00267582127178,4.92478164466801,0,0,0.472674085820339,4.65631734671384,2.54720878510066,1.0478326039817,0.364295288292542,0,0,0.522389211897802,0.797747763113191,0,0,0,0,0,0,0,0.419499436209906,0.275118041940067,0.417989933073621,0,1.42306505074684,0.33472061276467,0,0,0.24406205754817,0,1.62028389576352,0,0,0,0,0,0,0,0,0,19.8788780678127,1.77282716330412,2.1185468930115,0.286836620748814,1.06400514659507,6.16745360156538,1.06748995729705,19.98007142179,0.311211035399766,0.942974704487816,0.490385709340376,0.302714855289863,0.576175924479999,0.468642863667593,3.43376084513353,0,2.54062756938062,0.469737994575059,0.323745888736263,0.280901613404497,0.204154171254893,0.982674538494144,0.723280468230358,4.75201142912821,7.17074094907815,0,5.03032699271367,0.336672227908132,0.250237039743928,0,2.63386572528503,13.1789752193578,5.70904623845068,3.62982986112067,0.538168907066586,4.27114777637135,5.08636562782948,1.50045548042201,0.92747276314595,2.06112432036503,4.09457083929498,0.506328996723799,1.07180705677318,2.27190396819703,2.85354685791128,0.323292113637624,0.710019185033229,2.92181084860157,3.89989362314122,0,0.272746120590835,0,0.243947412259191,0.530119073285941,0.232387885739037,0.725627385107593,0,0,3.12899064659632,16.724264393015,0,6.96551892047969,5.77503585335668,0.828147600278907,0.337169380156203,0.241011029883482,0.992645754591546,0.871517776369625,0.237270619111097,0.808987848960987,0.98110732562673,0.769494313892781,0,2.80483547606892,1.2347220339942,11.7606969108434,0,0,0.590789906681404,0,0,1.02940686179115,0,0,0,0.0925884451585296,0.325808305310325,0,0,0.811512834825538,2.23076519048061,0.577465791044295,0,0.951270761172991,0,0,0,0.468008530278475,0.445893486866185,0,0.503946384596579,0,0,0,0.766765358330422,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0.112131084345361,0,0.22001485746285,4.52451005152222,14.3062578340753,3.381211010224,10.9034627799797,12.4808924293639,0.771622122786426,7.09245660116391,1.8649552531127,3.28849385413739,0.542621605391443,4.11620168390384,0.65147236858747,0.355391948742546,2.37585561880029,3.31583314765545,1.74306691720059,7.09808237392605,0,0,0,7.18874566474748,4.59447743336456,0,2.17171960001369,2.26023954805422,1.61154866915906,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0.613457458595699,8.00272833695483,3.25518028439683,49.7050359058629,29.0839251739374,24.9169815753617,10.5427273493442,0.601892199455438,2.27407504055985,3.10419213877515,3.32112799267718,2.76553752812555,2.43274120510632,1.76221041716467,0.686286847621712,0,0,0,0,0,0,2.23297027036899,3.83654933220156,6.17452207752762,2.94720043288112,5.11707249066703,11.0989205589089,2.96836132889982,2.00472601943452,2.66342587969691,1.06765302817952,1.55776328755086,4.29978400301849,0.241718899183244,1.00253235151642,0,1.49258782613989,4.73437036817464,9.83433112195681,0,0.15403067420883,1.56869953835371,0,0.105551628892876,0,0,0,4.62681758070868,1.62567862526312,3.51182841698397,0,0.831076008928724,0.447749509444357,0,0,0,2.62411716559765,0.650756789328606,0.618246069886334,0.732555718546747,0.577566499444116,0,0,4.82051789532479,0.773365746336976,0.462145851343933,1.22802939780904,0.689182862422653,0.322260734604821,2.17525040871343,0.767039646744908,2.1367688555217,0,0.192190067365106,0,0,5.11330104227014,0.62962469366128,0,0.308033580176089,1.06461206063404,0,3.33583594387056,0,0.744316738719335,9.17500331684305,9.34087950226742,2.81487570442467,0,0.318203247925937,2.35484592059769,1.61885211824983,3.84351841630477,1.53156123049392,0.606547444719948,1.58510321173008,2.10629228119491,1.95053495635836,3.65570234446927,0,3.68549760801562,2.82810863907426,1.13008116620243,0.551365343546124,3.3171948762061,2.63070531152258,2.89387767133344,1.31178950409327,3.44947640836597,3.40805847909725,1.40847801266121,1.00387946542836,5.60019533774791,0.7133421029625,0.709522128141196,4.85547561184627,2.63435914367922,0,1.04980416073495,0,0,0,0.376575203107117,0,0,0,0.689170200620878,0,0.764637207142375,1.13929437434833,0.238231775457789,0.411362273086194,0,0,3.17250070517708,2.88424992044177,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586032717087576,3.27673408723686,0,0.284136146806413,0,0,0,0,0,1.44701316529778,0,0,35.0676459321883,0.552567831062295,0,0,0,11.5084647434869,0,0,0,8.08875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| ||
|short_description=p@chr20:35178101..35178139,- | |short_description=p@chr20:35178101..35178139,- | ||
}} | }} |
Latest revision as of 13:37, 28 July 2015
Short description: | p@chr20:35178101..35178139, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:35178101..35178139, - |
Coexpression cluster: | C384_Adipocyte_smooth_bladder_left_aorta_Osteoblast_colon |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 5.12e-10 | 76 |
smooth muscle cell | 2.64e-09 | 43 |
smooth muscle myoblast | 2.64e-09 | 43 |
muscle precursor cell | 8.72e-09 | 58 |
myoblast | 8.72e-09 | 58 |
multi-potent skeletal muscle stem cell | 8.72e-09 | 58 |
preadipocyte | 3.58e-08 | 12 |
muscle cell | 8.19e-08 | 55 |
Ontology term | p-value | n |
---|---|---|
mesenchyme | 4.93e-14 | 160 |
entire embryonic mesenchyme | 4.93e-14 | 160 |
trunk mesenchyme | 8.81e-13 | 122 |
epithelial vesicle | 5.41e-10 | 78 |
mesoderm | 6.01e-10 | 315 |
mesoderm-derived structure | 6.01e-10 | 315 |
presumptive mesoderm | 6.01e-10 | 315 |
muscle tissue | 8.97e-10 | 64 |
musculature | 8.97e-10 | 64 |
musculature of body | 8.97e-10 | 64 |
trunk | 1.56e-09 | 199 |
dense mesenchyme tissue | 1.84e-09 | 73 |
somite | 3.55e-09 | 71 |
presomitic mesoderm | 3.55e-09 | 71 |
presumptive segmental plate | 3.55e-09 | 71 |
dermomyotome | 3.55e-09 | 71 |
trunk paraxial mesoderm | 3.55e-09 | 71 |
skeletal muscle tissue | 6.47e-09 | 62 |
striated muscle tissue | 6.47e-09 | 62 |
myotome | 6.47e-09 | 62 |
paraxial mesoderm | 6.93e-09 | 72 |
presumptive paraxial mesoderm | 6.93e-09 | 72 |
multilaminar epithelium | 8.15e-08 | 83 |
intermediate mesoderm | 1.24e-07 | 28 |