FFCP PHASE1:Hg19::chr2:119981391..119981446,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr2:119981391..119981446,+
|short_description=p1@STEAP3
|description=CAGE_peak_1_at_STEAP3_5end
|association_with_transcript=0bp_to_ENST00000393106,ENST0000039...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55240 | |EntrezGene=55240 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24592 | |HGNC=24592 | ||
|TSSclassifier=strong | |||
|UniProt=Q658P3,B8ZZX6 | |UniProt=Q658P3,B8ZZX6 | ||
|association_with_transcript=0bp_to_ENST00000393106,ENST00000393107,ENST00000393110,ENST00000409811_5end | |||
|cluster_id=chr2:119981391..119981446,+ | |||
|description=CAGE_peak_1_at_STEAP3_5end | |||
|id=chr2:119981391..119981446,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.96e-25!180;CL:0000220!1.82e-18!246;CL:0002321!2.90e-18!248;CL:0000548!9.52e-18!679;CL:0000004!9.52e-18!679;CL:0000255!9.52e-18!679;CL:0000012!4.00e-17!682;CL:0000144!4.15e-16!625;CL:0002371!7.76e-16!591;CL:0000057!9.62e-14!75;CL:0000222!4.45e-11!119;CL:0000183!3.71e-10!59;CL:0000680!1.42e-09!57;CL:0000056!1.42e-09!57;CL:0000355!1.42e-09!57;CL:0000187!9.27e-09!54;CL:0000066!3.30e-08!254;CL:0000003!6.57e-08!722;CL:0000192!2.38e-07!42;CL:0000514!2.38e-07!42;CL:0002620!5.67e-07!23;CL:0000393!7.14e-07!60;CL:0000211!7.14e-07!60 | |||
|ontology_enrichment_celltype_v019=CL:0002620;5.80e-07;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.08e-18,250;CL:0000057,2.63e-13,76;CL:0000222,2.09e-11,121;CL:0000680,7.78e-10,58;CL:0000056,7.78e-10,58;CL:0000355,7.78e-10,58;CL:0000187,5.14e-09,55;CL:0000066,5.00e-08,253;CL:0000192,1.33e-07,43;CL:0000514,1.33e-07,43;CL:0000393,3.81e-07,61;CL:0000211,3.81e-07,61;CL:0002620,5.61e-07,23 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!1.63e-19!143;UBERON:0000475!5.99e-17!365;UBERON:0002100!9.15e-16!216;UBERON:0003104!2.53e-15!238;UBERON:0009142!2.53e-15!238;UBERON:0000914!2.15e-14!83;UBERON:0002329!2.15e-14!83;UBERON:0003077!2.15e-14!83;UBERON:0003059!2.15e-14!83;UBERON:0007282!2.15e-14!83;UBERON:0009618!2.15e-14!83;UBERON:0007285!2.15e-14!83;UBERON:0000468!4.82e-13!659;UBERON:0000481!5.07e-13!347;UBERON:0000486!6.19e-13!82;UBERON:0004290!6.31e-13!70;UBERON:0003102!2.29e-12!95;UBERON:0000490!1.01e-11!138;UBERON:0000467!3.52e-11!625;UBERON:0000119!3.59e-11!312;UBERON:0000480!6.16e-11!626;UBERON:0000483!2.04e-10!309;UBERON:0003914!4.50e-10!118;UBERON:0000923!1.38e-09!604;UBERON:0005291!1.38e-09!604;UBERON:0006598!1.38e-09!604;UBERON:0002532!1.38e-09!604;UBERON:0001444!1.72e-09!48;UBERON:0002050!2.26e-09!605;UBERON:0005423!2.26e-09!605;UBERON:0001134!4.72e-09!61;UBERON:0002036!4.72e-09!61;UBERON:0003082!4.72e-09!61;UBERON:0000922!6.30e-09!612;UBERON:0000926!1.06e-08!448;UBERON:0004120!1.06e-08!448;UBERON:0006603!1.06e-08!448;UBERON:0002385!1.25e-08!63;UBERON:0001015!1.25e-08!63;UBERON:0000383!1.25e-08!63;UBERON:0000466!1.57e-08!126;UBERON:0002097!5.44e-08!40;UBERON:0002199!1.32e-07!45;UBERON:0002416!1.32e-07!45;UBERON:0002049!1.98e-07!79;UBERON:0007798!1.98e-07!79 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,1.71e-16,160;UBERON:0009142,1.71e-16,160;UBERON:0000490,1.85e-15,148;UBERON:0005256,1.91e-15,122;UBERON:0007503,8.62e-15,78;UBERON:0002100,6.40e-14,199;UBERON:0000486,3.32e-13,83;UBERON:0002329,3.34e-13,71;UBERON:0003059,3.34e-13,71;UBERON:0007282,3.34e-13,71;UBERON:0004290,3.34e-13,71;UBERON:0009618,3.34e-13,71;UBERON:0003102,9.95e-13,99;UBERON:0003077,1.41e-12,72;UBERON:0007285,1.41e-12,72;UBERON:0007524,1.55e-12,73;UBERON:0000119,1.36e-11,309;UBERON:0000483,7.99e-11,306;UBERON:0003914,7.40e-10,117;UBERON:0001134,2.63e-09,62;UBERON:0002036,2.63e-09,62;UBERON:0003082,2.63e-09,62;UBERON:0001444,6.28e-09,49;UBERON:0002385,7.09e-09,64;UBERON:0001015,7.09e-09,64;UBERON:0000383,7.09e-09,64;UBERON:0002097,1.72e-08,41;UBERON:0002199,4.45e-08,46;UBERON:0002416,4.45e-08,46;UBERON:0000033,7.91e-08,56;UBERON:0002049,1.02e-07,78;UBERON:0007798,1.02e-07,78 | |||
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| ||
|short_description=p1@STEAP3 | |||
}} | }} |
Latest revision as of 16:45, 16 September 2015
Short description: | p1@STEAP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_STEAP3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000393106, ENST00000393107, ENST00000393110, ENST00000409811_5end |
EntrezGene: | STEAP3 |
HGNC: | 24592 |
UniProt: | Q658P3B8ZZX6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.08e-18 | 250 |
fibroblast | 2.63e-13 | 76 |
mesodermal cell | 2.09e-11 | 121 |
muscle precursor cell | 7.78e-10 | 58 |
myoblast | 7.78e-10 | 58 |
multi-potent skeletal muscle stem cell | 7.78e-10 | 58 |
muscle cell | 5.14e-09 | 55 |
epithelial cell | 5.00e-08 | 253 |
smooth muscle cell | 1.33e-07 | 43 |
smooth muscle myoblast | 1.33e-07 | 43 |
electrically responsive cell | 3.81e-07 | 61 |
electrically active cell | 3.81e-07 | 61 |
skin fibroblast | 5.61e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
mesenchyme | 1.71e-16 | 160 |
entire embryonic mesenchyme | 1.71e-16 | 160 |
unilaminar epithelium | 1.85e-15 | 148 |
trunk mesenchyme | 1.91e-15 | 122 |
epithelial vesicle | 8.62e-15 | 78 |
trunk | 6.40e-14 | 199 |
multilaminar epithelium | 3.32e-13 | 83 |
somite | 3.34e-13 | 71 |
presomitic mesoderm | 3.34e-13 | 71 |
presumptive segmental plate | 3.34e-13 | 71 |
dermomyotome | 3.34e-13 | 71 |
trunk paraxial mesoderm | 3.34e-13 | 71 |
surface structure | 9.95e-13 | 99 |
paraxial mesoderm | 1.41e-12 | 72 |
presumptive paraxial mesoderm | 1.41e-12 | 72 |
dense mesenchyme tissue | 1.55e-12 | 73 |
cell layer | 1.36e-11 | 309 |
epithelium | 7.99e-11 | 306 |
epithelial tube | 7.40e-10 | 117 |
skeletal muscle tissue | 2.63e-09 | 62 |
striated muscle tissue | 2.63e-09 | 62 |
myotome | 2.63e-09 | 62 |
subdivision of head | 6.28e-09 | 49 |
muscle tissue | 7.09e-09 | 64 |
musculature | 7.09e-09 | 64 |
musculature of body | 7.09e-09 | 64 |
skin of body | 1.72e-08 | 41 |
integument | 4.45e-08 | 46 |
integumental system | 4.45e-08 | 46 |
head | 7.91e-08 | 56 |
vasculature | 1.02e-07 | 78 |
vascular system | 1.02e-07 | 78 |