FFCP PHASE1:Hg19::chr2:241375176..241375187,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr2:241375176..241375187,+
|short_description=p5@GPC1
|description=CAGE_peak_5_at_GPC1_5end
|association_with_transcript=61bp_to_NM_002081,uc002vyw.3_5end
|En...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2817 | |EntrezGene=2817 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4449 | |HGNC=4449 | ||
|TSSclassifier=strong | |||
|UniProt=P35052 | |UniProt=P35052 | ||
|association_with_transcript=61bp_to_NM_002081,uc002vyw.3_5end | |||
|cluster_id=chr2:241375176..241375187,+ | |||
|coexpression_cluster_id=C1899 | |||
|description=CAGE_peak_5_at_GPC1_5end | |||
|id=chr2:241375176..241375187,+ | |||
|ontology_enrichment_celltype=CL:0000055!3.35e-29!180;CL:0000220!1.40e-20!246;CL:0002321!3.92e-20!248;CL:0000057!5.86e-16!75;CL:0000183!3.43e-12!59;CL:0000680!1.75e-11!57;CL:0000056!1.75e-11!57;CL:0000355!1.75e-11!57;CL:0000222!6.63e-11!119;CL:0000187!1.78e-10!54;CL:0000393!2.06e-10!60;CL:0000211!2.06e-10!60;CL:0000548!5.63e-08!679;CL:0000004!5.63e-08!679;CL:0000255!5.63e-08!679;CL:0000066!1.12e-07!254;CL:0000012!2.35e-07!682;CL:0000192!2.79e-07!42;CL:0000514!2.79e-07!42;CL:0000144!9.34e-07!625 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.30e-16,250;CL:0000057,2.43e-16,76;CL:0000680,1.25e-11,58;CL:0000056,1.25e-11,58;CL:0000355,1.25e-11,58;CL:0000187,1.63e-10,55;CL:0000222,2.35e-10,121;CL:0000393,9.20e-10,61;CL:0000211,9.20e-10,61;CL:0000192,5.52e-07,43;CL:0000514,5.52e-07,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!1.68e-19!365;UBERON:0000481!3.97e-15!347;UBERON:0000119!7.29e-14!312;UBERON:0005256!1.12e-13!143;UBERON:0000483!2.23e-13!309;UBERON:0002100!5.24e-13!216;UBERON:0000486!6.14e-13!82;UBERON:0000914!4.20e-12!83;UBERON:0002329!4.20e-12!83;UBERON:0003077!4.20e-12!83;UBERON:0003059!4.20e-12!83;UBERON:0007282!4.20e-12!83;UBERON:0009618!4.20e-12!83;UBERON:0007285!4.20e-12!83;UBERON:0000468!1.39e-11!659;UBERON:0003102!5.47e-11!95;UBERON:0003104!7.95e-11!238;UBERON:0009142!7.95e-11!238;UBERON:0000467!2.75e-10!625;UBERON:0000480!3.50e-10!626;UBERON:0004290!5.18e-10!70;UBERON:0001134!1.07e-09!61;UBERON:0002036!1.07e-09!61;UBERON:0003082!1.07e-09!61;UBERON:0002385!4.64e-09!63;UBERON:0001015!4.64e-09!63;UBERON:0000383!4.64e-09!63;UBERON:0000064!8.62e-09!219;UBERON:0000490!2.65e-08!138;UBERON:0000477!1.08e-07!286;UBERON:0003914!1.62e-07!118;UBERON:0007100!1.80e-07!27;UBERON:0004872!5.93e-07!84;UBERON:0002050!6.97e-07!605;UBERON:0005423!6.97e-07!605;UBERON:0000923!7.03e-07!604;UBERON:0005291!7.03e-07!604;UBERON:0006598!7.03e-07!604;UBERON:0002532!7.03e-07!604 | |||
|ontology_enrichment_uberon_v019=UBERON:0007100;5.93e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000486,2.48e-12,83;UBERON:0003102,3.52e-11,99;UBERON:0005256,2.14e-10,122;UBERON:0001134,3.03e-10,62;UBERON:0002036,3.03e-10,62;UBERON:0003082,3.03e-10,62;UBERON:0007503,3.23e-10,78;UBERON:0007524,1.12e-09,73;UBERON:0003077,1.24e-09,72;UBERON:0007285,1.24e-09,72;UBERON:0002329,1.56e-09,71;UBERON:0003059,1.56e-09,71;UBERON:0007282,1.56e-09,71;UBERON:0004290,1.56e-09,71;UBERON:0009618,1.56e-09,71;UBERON:0002385,2.13e-09,64;UBERON:0001015,2.13e-09,64;UBERON:0000383,2.13e-09,64;UBERON:0003104,1.34e-08,160;UBERON:0009142,1.34e-08,160;UBERON:0000119,2.96e-08,309;UBERON:0000483,5.28e-08,306;UBERON:0007100,6.65e-08,27;UBERON:0002100,3.03e-07,199 | |||
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|phase1_expression=1.63510541343501,2.99740733447376,3.38290569830331,5.00366491765652,2.23480547213644,1.74467704820074,5.06599756336621,0,4.17897005119742,0.982935746006035,2.79120467188971,1.52908960491121,1.84636884759917,2.22779435328084,1.32558950291166,0,1.80808358407193,2.19093027116212,1.95173119516203,1.35433163884467,2.04000691244253,4.07491137921514,2.86235987131057,2.6006140763848,2.38531015230125,0,0,0,0,0,0,3.67768489791571,4.819294700452,4.43704812200145,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226618685395132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,4.69490601792545,2.04580098949649,1.44575660953827,3.50936537445123,3.47631645505977,0.795285947051099,0.973269740605272,1.79616152611729,1.33037638477538,1.40535657109002,0.523916301990851,3.64295288292542,3.70784442784429,0.324547393654683,0,0,0,0,0,0.993812036833525,2.58070378531837,2.42998351125316,2.82653970962005,0.419499436209906,1.37559020970034,1.46296476575767,0,0.71153252537342,0.33472061276467,0.805658634218294,0,1.46437234528902,0.735326160691737,1.62028389576352,0.17859945656816,0,0.450445921933289,0,0.949265659568129,0.549605231791222,0,0,5.66922267785295,2.98183171017191,2.02608818663328,1.98613771219828,8.03142538096678,2.12801029319014,2.80338800071154,1.06748995729705,5.42668606517752,2.8008993185979,2.55950276932407,2.61539044981534,1.51357427644931,2.88087962239999,0.937285727335186,0.936480230490962,0.570471821544449,0.896692083310806,0.822041490506354,1.45685649931318,1.26405726032024,1.63323337003915,1.96534907698829,2.58314452939414,1.18800285728205,2.96720315134268,4.55080680969013,11.4978902690598,1.17835279767846,0.875829639103749,0.831192346452549,5.26773145057006,3.67785354958824,4.05642759047811,3.17610112848059,7.71375433462106,2.56268866582281,1.48352330811693,8.70264178644767,1.8549455262919,7.72921620136887,5.58350568994769,4.05063197379039,2.92311015483596,3.28163906517349,1.93304787148829,0.323292113637624,17.0404604407975,5.23910910783729,4.0694542154517,4.63826047591912,4.09119180886252,1.72082757233402,0.121973706129595,0.265059536642971,0.69716365721711,0.518305275076852,0.504641701751257,0.36497735907583,1.56449532329816,8.36213219650751,2.76269842704961,0.928735856063958,2.88751792667834,1.30137480043828,1.85443159085912,1.44606617930089,1.21323370005633,1.30727666455444,1.18635309555548,0.943819157121151,0.784885860501384,1.53898862778556,0,11.2193419042757,3.2925920906512,8.82052268313252,0,0,2.95394953340702,0,0.491953754172454,1.88724591328378,4.2802611309364,2.24803506515239,1.40740561376283,2.31471112896324,1.95484983186195,6.23960871167747,0,1.73895607462615,2.58299127318808,0,0,0,0,1.71697232418975,0,0,0,2.81201501960331,3.35964256397719,2.41017665312057,1.88072897675981,2.90633938513962,4.98397482914775,0,0,0.207328115540772,0,0,0.507983154337352,1.14596527667483,2.34434894420094,1.71072446022705,1.02827492703324,2.40274446275134,0.571652865261156,2.35475277125258,0.87192013766656,3.8135908626894,1.29271715757778,21.4593867511129,7.607724773004,6.64845291462176,10.4007436911366,2.82928111688356,1.41849132023278,2.93064396917709,4.14636181608628,4.34097284313154,1.64648067356154,3.58309802723109,4.97548728239564,0.791951872933429,2.1100756394171,5.22920075160176,2.69927076191554,0,0,0,1.4377491329495,4.59447743336456,2.85273810081437,3.04040744001916,4.31500277355805,2.50685348535854,0,0,0,0,4.8277978602268,1.30139853857622,2.31986643833309,1.67516265334349,2.55175500661265,0,0,0,0.981531933753119,6.00204625271613,1.08506009479894,1.45579603071565,3.03329280955175,3.78485796081443,2.45996971484698,1.50473049863859,0,2.0694614258501,1.32845119707087,2.21243002250044,2.5196248195744,6.65723935373318,8.23544217146054,0,0,0,2.12189300012382,1.66435439510497,3.0239029332968,3.2254015016441,1.38115775959256,3.92924132206303,5.89440086576224,3.58195074346692,3.21707842287215,4.45254199334973,1.07946785661859,2.48586415438378,2.21743321237285,3.11552657510173,2.09178681227927,0.725156697549733,7.21823293091825,1.56537681191024,3.67406234126742,3.45973219212762,8.1297137274843,2.25599806453706,0.616122696835318,1.56869953835371,0,0.527758144464379,1.13733384070897,1.87103075804167,0.647747748306418,1.54227252690289,2.16757150035082,3.51182841698397,1.52925763827023,0.831076008928724,1.11937377361089,0,0,2.3080511260475,2.29610251989794,0.976135183992909,0.9273691048295,3.93748698718877,2.47528499761764,2.87132768998086,1.30012049207304,8.03419649220798,1.93341436584244,2.46477787383431,2.76306614507033,1.7918754422989,2.90034661144339,2.32026710262766,2.21589231281862,5.07482603186403,3.63626813794152,4.42037154939744,2.04180339991335,4.046311234222,0,11.6480568327337,0.6970372701606,9.24100740528266,2.12922412126809,1.73986598415015,2.22389062924704,1.14499909393593,1.48863347743867,0.949138274156178,2.85945290885737,7.93283153065135,2.13969494016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| ||
|short_description=p5@GPC1 | |||
}} | }} |
Latest revision as of 07:24, 16 September 2015
Short description: | p5@GPC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_GPC1_5end |
Coexpression cluster: | C1899_Mesenchymal_Fibroblast_Urothelial_Smooth_mucinous_Pericytes_Keratocytes |
Association with transcript: | 61bp_to_NM_002081, uc002vyw.3_5end |
EntrezGene: | GPC1 |
HGNC: | 4449 |
UniProt: | P35052 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.30e-16 | 250 |
fibroblast | 2.43e-16 | 76 |
muscle precursor cell | 1.25e-11 | 58 |
myoblast | 1.25e-11 | 58 |
multi-potent skeletal muscle stem cell | 1.25e-11 | 58 |
muscle cell | 1.63e-10 | 55 |
mesodermal cell | 2.35e-10 | 121 |
electrically responsive cell | 9.20e-10 | 61 |
electrically active cell | 9.20e-10 | 61 |
smooth muscle cell | 5.52e-07 | 43 |
smooth muscle myoblast | 5.52e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
multilaminar epithelium | 2.48e-12 | 83 |
surface structure | 3.52e-11 | 99 |
trunk mesenchyme | 2.14e-10 | 122 |
skeletal muscle tissue | 3.03e-10 | 62 |
striated muscle tissue | 3.03e-10 | 62 |
myotome | 3.03e-10 | 62 |
epithelial vesicle | 3.23e-10 | 78 |
dense mesenchyme tissue | 1.12e-09 | 73 |
paraxial mesoderm | 1.24e-09 | 72 |
presumptive paraxial mesoderm | 1.24e-09 | 72 |
somite | 1.56e-09 | 71 |
presomitic mesoderm | 1.56e-09 | 71 |
presumptive segmental plate | 1.56e-09 | 71 |
dermomyotome | 1.56e-09 | 71 |
trunk paraxial mesoderm | 1.56e-09 | 71 |
muscle tissue | 2.13e-09 | 64 |
musculature | 2.13e-09 | 64 |
musculature of body | 2.13e-09 | 64 |
mesenchyme | 1.34e-08 | 160 |
entire embryonic mesenchyme | 1.34e-08 | 160 |
cell layer | 2.96e-08 | 309 |
epithelium | 5.28e-08 | 306 |
primary circulatory organ | 6.65e-08 | 27 |
trunk | 3.03e-07 | 199 |