FFCP PHASE1:Hg19::chr5:134734940..134734958,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr5:134734940..134734958,-
|short_description=p2@H2AFY
|description=CAGE_peak_2_at_H2AFY_5end
|association_with_transcript=-12bp_to_ENST00000506671,NM_00104015...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9555 | |EntrezGene=9555 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4740 | |HGNC=4740 | ||
|TSSclassifier=strong | |||
|UniProt=D6RCF2,O75367 | |UniProt=D6RCF2,O75367 | ||
|association_with_transcript=-12bp_to_ENST00000506671,NM_001040158,NM_138609,NM_138610,uc003lam.1,uc003lan.1,uc003lao.1,uc003lap.1,uc003laq.1,uc003lar.1,uc011cxz.1_5end | |||
|cluster_id=chr5:134734940..134734958,- | |||
|description=CAGE_peak_2_at_H2AFY_5end | |||
|id=chr5:134734940..134734958,- | |||
|ontology_enrichment_celltype=CL:0000012!1.79e-18!682;CL:0000066!1.65e-17!254;CL:0000548!2.47e-17!679;CL:0000004!2.47e-17!679;CL:0000255!2.47e-17!679;CL:0000763!3.71e-14!112;CL:0000049!3.71e-14!112;CL:0000063!9.11e-13!578;CL:0002009!6.39e-10!65;CL:0000003!7.67e-10!722;CL:0002194!2.34e-09!63;CL:0000576!2.34e-09!63;CL:0000040!2.34e-09!63;CL:0000559!2.34e-09!63;CL:0000557!3.53e-09!71;CL:0000223!4.66e-09!59;CL:0000766!5.20e-09!76;CL:0000144!5.91e-08!625;CL:0002076!9.45e-08!43;CL:0000839!1.15e-07!70 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.19e-17,253;CL:0000763,2.13e-13,108;CL:0000049,2.13e-13,108;CL:0000223,1.09e-09,58;CL:0002009,3.38e-09,61;CL:0002194,1.22e-08,59;CL:0000576,1.22e-08,59;CL:0000040,1.22e-08,59;CL:0000559,1.22e-08,59;CL:0000557,1.79e-08,67;CL:0002076,1.95e-08,42;CL:0000766,2.57e-08,72;CL:0000839,5.37e-07,66 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!4.30e-19!235;DOID:14566!8.51e-19!239;DOID:305!2.04e-12!106;DOID:0050687!8.95e-12!143;DOID:0050686!1.04e-10!137;DOID:8692!4.92e-08!31;DOID:1240!1.64e-07!39 | |||
|ontology_enrichment_disease_v019=DOID:8692;7.73e-08;31 | |||
|ontology_enrichment_disease_v019_2=DOID:162,4.32e-19,235;DOID:14566,8.56e-19,239;DOID:305,2.05e-12,106;DOID:0050687,8.99e-12,143;DOID:0050686,1.04e-10,137;DOID:8692,4.92e-08,31;DOID:1240,1.64e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0001474!1.61e-09!86;UBERON:0002371!3.65e-09!80;UBERON:0004765!4.40e-08!101;UBERON:0001434!4.40e-08!101;UBERON:0008947!7.02e-07!38;UBERON:0003258!7.02e-07!38 | |||
|ontology_enrichment_uberon_v019=UBERON:0004807;6.31e-07;22!UBERON:0005911;7.00e-07;36!UBERON:0000072;8.37e-07;37 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001474,7.95e-09,82;UBERON:0002371,1.80e-08,76;UBERON:0004765,1.79e-07,90;UBERON:0008947,7.02e-07,38;UBERON:0003258,7.02e-07,38 | |||
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| ||
|short_description=p2@H2AFY | |||
}} | }} |
Latest revision as of 18:07, 24 September 2015
Short description: | p2@H2AFY |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_H2AFY_5end |
Coexpression cluster: | NA |
Association with transcript: | -12bp_to_ENST00000506671, NM_001040158, NM_138609, NM_138610, uc003lam.1, uc003lan.1, uc003lao.1, uc003lap.1, uc003laq.1, uc003lar.1, uc011cxz.1_5end |
EntrezGene: | H2AFY |
HGNC: | 4740 |
UniProt: | D6RCF2O75367 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.19e-17 | 253 |
myeloid cell | 2.13e-13 | 108 |
common myeloid progenitor | 2.13e-13 | 108 |
endodermal cell | 1.09e-09 | 58 |
macrophage dendritic cell progenitor | 3.38e-09 | 61 |
monopoietic cell | 1.22e-08 | 59 |
monocyte | 1.22e-08 | 59 |
monoblast | 1.22e-08 | 59 |
promonocyte | 1.22e-08 | 59 |
granulocyte monocyte progenitor cell | 1.79e-08 | 67 |
endo-epithelial cell | 1.95e-08 | 42 |
myeloid leukocyte | 2.57e-08 | 72 |
myeloid lineage restricted progenitor cell | 5.37e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
bone element | 7.95e-09 | 82 |
bone marrow | 1.80e-08 | 76 |
skeletal element | 1.79e-07 | 90 |
respiratory primordium | 7.02e-07 | 38 |
endoderm of foregut | 7.02e-07 | 38 |
Ontology term | p-value | n |
---|---|---|
cancer | 4.32e-19 | 235 |
disease of cellular proliferation | 8.56e-19 | 239 |
carcinoma | 2.05e-12 | 106 |
cell type cancer | 8.99e-12 | 143 |
organ system cancer | 1.04e-10 | 137 |
myeloid leukemia | 4.92e-08 | 31 |
leukemia | 1.64e-07 | 39 |