FFCP PHASE1:Hg19::chr5:33984741..33984774,-: Difference between revisions
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|id=chr5:33984741..33984774,-
|short_description=p1@SLC45A2
|description=CAGE_peak_1_at_SLC45A2_5end
|association_with_transcript=0bp_to_ENST00000382102,ENST0000050...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=51151 | |EntrezGene=51151 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16472 | |HGNC=16472 | ||
|TSSclassifier=strong | |||
|UniProt=D6RGY6 | |UniProt=D6RGY6 | ||
|association_with_transcript=0bp_to_ENST00000382102,ENST00000509381_5end | |||
|cluster_id=chr5:33984741..33984774,- | |||
|coexpression_cluster_id=C58 | |||
|description=CAGE_peak_1_at_SLC45A2_5end | |||
|id=chr5:33984741..33984774,- | |||
|ontology_enrichment_celltype=CL:0000147!8.69e-61!14;CL:0000148!2.13e-41!10;CL:0000541!2.13e-41!10;CL:0000325!3.66e-23!39;CL:0000149!1.28e-21!4;CL:0000710!6.67e-20!20;CL:0002567!1.04e-16!3;CL:0002586!1.49e-16!3;CL:0000075!2.53e-14!27;CL:0002077!5.60e-14!33;CL:0000333!2.12e-08!41;CL:0002566!9.30e-07!1 | |||
|ontology_enrichment_celltype_v019=CL:0000147;1.08e-87;14!CL:0000148;6.28e-61;10!CL:0000149;9.78e-50;4!CL:0002567;6.14e-38;3!CL:0002586;1.68e-37;3!CL:0000710;2.78e-30;20!CL:0000075;2.58e-22;27!CL:0002077;1.31e-15;34!CL:0002566;5.15e-14;1!CL:0000228;1.95e-13;1!CL:0002372;1.95e-13;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000147,1.08e-87,14;CL:0000148,6.56e-61,10;CL:0000541,6.56e-61,10;CL:0000149,9.18e-50,4;CL:0002567,6.54e-38,3;CL:0002586,1.58e-37,3;CL:0000710,2.84e-30,20;CL:0000075,2.63e-22,27;CL:0002077,1.30e-17,34;CL:0002566,5.15e-14,1;CL:0000333,8.23e-14,41;CL:0000228,1.83e-13,1;CL:0002372,1.83e-13,1;CL:0000133,1.46e-09,59;CL:0000221,9.02e-08,72 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1909!8.61e-12!2 | |||
|ontology_enrichment_disease_v019=DOID:1909;4.63e-26;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,4.63e-26,2 | |||
|ontology_enrichment_uberon=UBERON:0000966!3.22e-17!5;UBERON:0005388!3.22e-17!5;UBERON:0001802!3.22e-17!5;UBERON:0001781!1.49e-16!3;UBERON:0001782!1.49e-16!3;UBERON:0005424!1.49e-16!3;UBERON:0000970!7.52e-09!20;UBERON:0002104!2.13e-08!21;UBERON:0007625!9.65e-08!11;UBERON:0000020!1.30e-07!23;UBERON:0001032!2.86e-07!24;UBERON:0004456!2.86e-07!24 | |||
|ontology_enrichment_uberon_v019=UBERON:0000966;1.24e-39;5!UBERON:0005388;1.24e-39;5!UBERON:0001802;1.24e-39;5!UBERON:0001781;1.68e-37;3!UBERON:0001782;1.68e-37;3!UBERON:0000970;2.30e-15;20!UBERON:0002104;1.24e-14;21!UBERON:0000020;2.32e-13;23!UBERON:0001032;8.39e-13;24!UBERON:0004456;8.39e-13;24!UBERON:0007625;1.03e-10;11!UBERON:0000019;1.11e-10;19!UBERON:0000047;1.11e-10;19!UBERON:0004088;1.11e-10;19!UBERON:0010230;1.11e-10;19!UBERON:0001456;1.09e-09;21!UBERON:0010371;1.22e-09;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001782,1.58e-37,3;UBERON:0005424,1.58e-37,3;UBERON:0000966,3.98e-33,6;UBERON:0005388,3.98e-33,6;UBERON:0001802,3.98e-33,6;UBERON:0001781,2.40e-28,4;UBERON:0000970,1.22e-14,21;UBERON:0002104,1.22e-14,21;UBERON:0000020,8.29e-13,24;UBERON:0001032,8.29e-13,24;UBERON:0004456,8.29e-13,24;UBERON:0007625,1.01e-10,11;UBERON:0000019,3.64e-10,20;UBERON:0000047,3.64e-10,20;UBERON:0010312,3.64e-10,20;UBERON:0004088,3.64e-10,20;UBERON:0010230,3.64e-10,20;UBERON:0003072,3.64e-10,20;UBERON:0004128,3.64e-10,20;UBERON:0003071,3.64e-10,20;UBERON:0001456,2.91e-09,22 | |||
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|short_description=p1@SLC45A2 | |||
}} | }} |
Latest revision as of 17:06, 17 September 2015
Short description: | p1@SLC45A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SLC45A2_5end |
Coexpression cluster: | C58_Melanocyte_melanoma_retina_Retinal_eye_migratory_H9 |
Association with transcript: | 0bp_to_ENST00000382102, ENST00000509381_5end |
EntrezGene: | SLC45A2 |
HGNC: | 16472 |
UniProt: | D6RGY6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pigment cell | 1.08e-87 | 14 |
melanocyte | 6.56e-61 | 10 |
melanoblast | 6.56e-61 | 10 |
visual pigment cell | 9.18e-50 | 4 |
light melanocyte | 6.54e-38 | 3 |
retinal pigment epithelial cell | 1.58e-37 | 3 |
neurecto-epithelial cell | 2.84e-30 | 20 |
columnar/cuboidal epithelial cell | 2.63e-22 | 27 |
ecto-epithelial cell | 1.30e-17 | 34 |
dark melanocyte | 5.15e-14 | 1 |
migratory neural crest cell | 8.23e-14 | 41 |
multinucleate cell | 1.83e-13 | 1 |
myotube | 1.83e-13 | 1 |
neurectodermal cell | 1.46e-09 | 59 |
ectodermal cell | 9.02e-08 | 72 |
Ontology term | p-value | n |
---|---|---|
pigmented layer of retina | 1.58e-37 | 3 |
presumptive retinal pigmented epithelium | 1.58e-37 | 3 |
retina | 3.98e-33 | 6 |
photoreceptor array | 3.98e-33 | 6 |
posterior segment of eyeball | 3.98e-33 | 6 |
layer of retina | 2.40e-28 | 4 |
eye | 1.22e-14 | 21 |
visual system | 1.22e-14 | 21 |
sense organ | 8.29e-13 | 24 |
sensory system | 8.29e-13 | 24 |
entire sense organ system | 8.29e-13 | 24 |
pigment epithelium of eye | 1.01e-10 | 11 |
camera-type eye | 3.64e-10 | 20 |
simple eye | 3.64e-10 | 20 |
immature eye | 3.64e-10 | 20 |
ocular region | 3.64e-10 | 20 |
eyeball of camera-type eye | 3.64e-10 | 20 |
optic cup | 3.64e-10 | 20 |
optic vesicle | 3.64e-10 | 20 |
eye primordium | 3.64e-10 | 20 |
face | 2.91e-09 | 22 |
Ontology term | p-value | n |
---|---|---|
melanoma | 4.63e-26 | 2 |