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MCL coexpression mm9:446: Difference between revisions

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{{MCL_coexpression_mm9
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|ontology_enrichment_celltype=CL:0000239!1.57e-08!6;CL:0000677!1.57e-08!6;CL:0000212!1.57e-08!6;CL:0000584!1.57e-08!6;CL:0000075!3.89e-07!7;CL:0002563!8.74e-07!9;CL:0002251!8.74e-07!9
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000160!4.53e-25!31;UBERON:0005409!6.36e-20!47;UBERON:0000344!1.13e-13!15;UBERON:0001242!2.38e-11!13;UBERON:0000060!2.38e-11!13;UBERON:0001262!2.38e-11!13;UBERON:0004786!2.38e-11!13;UBERON:0001007!1.24e-07!116;UBERON:0001555!1.24e-07!116;UBERON:0007026!1.24e-07!116;UBERON:0004119!2.51e-07!118;UBERON:0000925!2.51e-07!118;UBERON:0006595!2.51e-07!118;UBERON:0004923!4.17e-07!24;UBERON:0003350!8.74e-07!9;UBERON:0004808!8.74e-07!9;UBERON:0001277!8.74e-07!9
|tfbs_overrepresentation_for_novel_motifs=0.175413,0.282772,0.157426,0.593409,0.296927,0.618816,0.782043,1.03979,1.53735,0.0604331,0.252112,0.277243,0.376789,0.804507,1.62191,0,0.46143,1.49303,0.964807,0.811732,0.415519,1.15861,0.296055,0.0873986,0.16256,0.319311,0.322606,0.232181,0.366819,1.44325,0.22152,1.36118,0.0827485,0.82702,0.0978183,0.537473,0.0778621,0.274364,0.510225,0.0536011,0.290922,0.225414,0.33101,0.325245,0.174452,0.197508,0.391673,0.684176,1.19306,0.37148,0.445973,0.341665,0.416592,0.683824,1.67046,0.302599,0.385691,0.26711,1.26643,0.300938,0.534331,0.349585,0.749563,0.43605,0.311703,0.471894,0.829699,1.16897,0.530087,1.02503,0.144846,1.51406,0.106553,0.731855,0.0291015,0.263994,0.279429,0.381898,0.518764,0.135947,0.393181,0.476893,0.348372,0.157538,0.623727,0.000989898,0.0831859,0.231141,0.395899,1.32869,0.896685,0.62835,1.38593,0.0914951,0.0649512,0.792559,0.0419895,0.56686,0.391893,0.917454,0.26831,0.552324,0.667487,1.13461,0.445567,0.225081,0.498793,1.25687,0.139088,0.134388,0.170493,0.669156,0.424252,0.256145,2.08911,0.60246,0.00200355,0.600007,0.462587,1.41339,0.736964,1.07223,0.320815,0.381122,0.955823,0.522111,0.293459,0.558086,0.828246,0.310322,1.56925,1.09966,0.799981,0.313768,0.92434,0.204108,0.181334,0.64263,0.876916,1.69384,1.29725,0.834212,0.880931,0.562149,0.439856,0.225756,0.394362,1.65442,1.6306,0.0892035,0.0950247,0.00478823,0.685297,0.815051,0.841089,0.762455,0.342508,0.340691,0.173692,0.534479,0.886073,0.622933,0.522515,0.50469,0.436947,0.827428,0.563665,0.757197,0.122518
}}

Latest revision as of 15:19, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr13:55424105..55424125,+p@chr13:55424105..55424125
+
Mm9::chr14:8849048..8849063,+p@chr14:8849048..8849063
+
Mm9::chr5:135039940..135039957,-p@chr5:135039940..135039957
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Mm9::chr7:86967036..86967048,-p@chr7:86967036..86967048
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Mm9::chr7:86967194..86967232,-p@chr7:86967194..86967232
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Mm9::chr7:86967234..86967252,-p@chr7:86967234..86967252
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Mm9::chr7:86970221..86970233,-p@chr7:86970221..86970233
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Mm9::chr7:86980291..86980302,-p@chr7:86980291..86980302
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Mm9::chr7:86981204..86981221,-p@chr7:86981204..86981221
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Mm9::chr7:86981246..86981275,-p@chr7:86981246..86981275
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Mm9::chr7:86983180..86983206,-p@chr7:86983180..86983206
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Mm9::chr7:86983354..86983368,-p@chr7:86983354..86983368
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Mm9::chr7:86983568..86983578,-p@chr7:86983568..86983578
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Mm9::chr7:86983822..86983840,-p@chr7:86983822..86983840
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Mm9::chr7:86984076..86984090,-p@chr7:86984076..86984090
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Mm9::chr7:86985806..86985861,-p@chr7:86985806..86985861
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Mm9::chr9:51126465..51126484,-p@chr9:51126465..51126484
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Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
intestine4.53e-2531
gastrointestinal system6.36e-2047
mucosa1.13e-1315
intestinal mucosa2.38e-1113
anatomical wall2.38e-1113
wall of intestine2.38e-1113
gastrointestinal system mucosa2.38e-1113
digestive system1.24e-07116
digestive tract1.24e-07116
primitive gut1.24e-07116
endoderm-derived structure2.51e-07118
endoderm2.51e-07118
presumptive endoderm2.51e-07118
organ component layer4.17e-0724
epithelium of mucosa8.74e-079
gastrointestinal system epithelium8.74e-079
intestinal epithelium8.74e-079


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.0188216
MA0004.10.206012
MA0006.10.315449
MA0007.10.195085
MA0009.10.576798
MA0014.10.00023305
MA0017.11.73793
MA0019.10.413421
MA0024.10.536784
MA0025.10.795679
MA0027.12.19092
MA0028.10.100975
MA0029.10.51708
MA0030.10.523021
MA0031.10.490954
MA0038.10.319246
MA0040.10.588314
MA0041.10.152751
MA0042.10.144042
MA0043.10.666547
MA0046.10.609938
MA0048.10.191487
MA0050.10.235075
MA0051.10.326637
MA0052.10.595747
MA0055.10.156856
MA0056.10
MA0057.10.0640642
MA0058.10.139612
MA0059.10.147666
MA0060.10.0544856
MA0061.10.0684878
MA0063.10
MA0066.10.310219
MA0067.10.902253
MA0068.10.0143498
MA0069.10.59606
MA0070.10.587119
MA0071.10.234437
MA0072.10.579318
MA0073.11.13563
MA0074.10.769072
MA0076.10.386726
MA0077.10.559443
MA0078.10.354249
MA0081.10.163204
MA0083.10.665805
MA0084.11.22195
MA0087.10.625609
MA0088.10.101322
MA0089.10
MA0090.10.181323
MA0091.10.617309
MA0092.10.535473
MA0093.10.105788
MA0095.10
MA0098.10
MA0100.10.271974
MA0101.10.910487
MA0103.10.751604
MA0105.10.269753
MA0106.10.360817
MA0107.10.73481
MA0108.20.433384
MA0109.10
MA0111.10.559312
MA0113.10.337108
MA0114.12.41355
MA0115.10.669167
MA0116.10.0949327
MA0117.10.639033
MA0119.10.467825
MA0122.10.657549
MA0124.10.851049
MA0125.10.780232
MA0130.10
MA0131.10.409473
MA0132.10
MA0133.10
MA0135.10.700734
MA0136.10.297196
MA0139.10.160584
MA0140.10.271883
MA0141.10.405018
MA0142.10.477975
MA0143.10.925469
MA0144.10.0688535
MA0145.10.240392
MA0146.10.0385738
MA0147.10.0750034
MA0148.10.622748
MA0149.10.157322
MA0062.20.521029
MA0035.20.756371
MA0039.20.0130173
MA0138.20.402586
MA0002.21.962
MA0137.20.127311
MA0104.20.0483916
MA0047.20.318614
MA0112.20.114544
MA0065.20.941441
MA0150.10.567944
MA0151.10
MA0152.10.318703
MA0153.10.716409
MA0154.10.609154
MA0155.10.010056
MA0156.10.77202
MA0157.10.4495
MA0158.10
MA0159.11.45645
MA0160.10.220282
MA0161.10
MA0162.10.0194213
MA0163.10.441382
MA0164.10.297489
MA0080.20.737223
MA0018.20.305372
MA0099.20.397135
MA0079.20.154486
MA0102.21.27355
MA0258.10.219649
MA0259.10.0696308
MA0442.10
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