FFCP PHASE1:Hg19::chr13:24825824..24825879,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=221178 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23222 | |||
|TSSclassifier=strong | |||
|UniProt=Q96N96 | |||
|association_with_transcript=0bp_to_ENST00000434675,ENST00000438694,ENST00000494772,uc010tcy.1,uc010tcz.1_5end | |||
|cluster_id=chr13:24825824..24825879,+ | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_3_at_SPATA13_5end | |||
|id=chr13:24825824..24825879,+ | |||
|ontology_enrichment_celltype=CL:0000738!1.29e-36!140;CL:0002087!1.19e-29!119;CL:0002031!2.33e-27!124;CL:0000037!4.68e-24!172;CL:0000566!4.68e-24!172;CL:0000084!1.57e-23!25;CL:0000827!1.57e-23!25;CL:0000988!1.00e-21!182;CL:0002032!1.24e-21!165;CL:0000837!1.24e-21!165;CL:0000791!6.01e-21!18;CL:0000789!6.01e-21!18;CL:0002420!6.01e-21!18;CL:0002419!6.01e-21!18;CL:0000790!6.01e-21!18;CL:0000838!3.90e-17!52;CL:0000542!1.44e-16!53;CL:0000051!1.44e-16!53;CL:0000766!1.45e-14!76;CL:0002057!1.31e-13!42;CL:0000625!1.88e-13!11;CL:0000860!7.59e-13!45;CL:0000557!1.71e-11!71;CL:0002009!1.79e-11!65;CL:0002194!2.47e-11!63;CL:0000576!2.47e-11!63;CL:0000040!2.47e-11!63;CL:0000559!2.47e-11!63;CL:0000839!5.13e-11!70;CL:0000624!3.26e-08!6;CL:0000763!6.45e-08!112;CL:0000049!6.45e-08!112;CL:0000451!9.81e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0000084;1.34e-32;25!CL:0000791;1.44e-30;18!CL:0000789;1.44e-30;18!CL:0002419;1.44e-30;18!CL:0000625;2.54e-19;11!CL:0000542;3.87e-12;53!CL:0000624;1.62e-11;6!CL:0002087;4.09e-10;104!CL:0000738;7.73e-08;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,2.38e-33,136;CL:0000084,1.02e-32,25;CL:0000827,1.02e-32,25;CL:0000791,1.44e-30,18;CL:0000789,1.44e-30,18;CL:0002420,1.44e-30,18;CL:0002419,1.44e-30,18;CL:0000790,1.44e-30,18;CL:0002087,3.44e-26,115;CL:0000037,2.86e-23,168;CL:0002031,1.02e-21,120;CL:0000988,4.04e-21,177;CL:0000838,2.50e-20,52;CL:0002032,5.32e-20,161;CL:0000837,5.32e-20,161;CL:0000542,9.14e-20,53;CL:0000051,9.14e-20,53;CL:0000625,2.47e-19,11;CL:0000624,1.67e-11,6;CL:0000766,1.32e-08,72;CL:0000860,3.61e-07,42;CL:0002057,3.61e-07,42 | |||
|ontology_enrichment_development_v019=CL:0000790;1.44e-30;18!CL:0000051;3.87e-12;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.49e-23!115;UBERON:0002390!4.20e-19!102;UBERON:0003061!4.20e-19!102;UBERON:0002193!1.55e-17!112;UBERON:0000178!9.23e-11!15;UBERON:0000179!9.23e-11!15;UBERON:0000463!9.23e-11!15;UBERON:0002405!2.21e-09!115;UBERON:0002371!6.82e-09!80;UBERON:0001474!1.62e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.52e-14;15!UBERON:0000179;3.52e-14;15!UBERON:0000463;3.52e-14;15!UBERON:0002390;1.06e-08;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,5.07e-15,98;UBERON:0003061,5.07e-15,98;UBERON:0002193,1.81e-14,108;UBERON:0000178,3.52e-14,15;UBERON:0000179,3.52e-14,15;UBERON:0000463,3.52e-14,15;UBERON:0004177,3.94e-08,7;UBERON:0005057,3.94e-08,7;UBERON:0002370,3.67e-07,4;UBERON:0005058,3.67e-07,4;UBERON:0009113,3.67e-07,4;UBERON:0003295,3.67e-07,4;UBERON:0005562,3.67e-07,4;UBERON:0002405,3.86e-07,93 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,15.7345710739562,59.8773861031652,14.0882672217629,0,0,0,0,0,0,13.2958898047651,22.2604336691857,21.7010870715852,3.13481663935894,8.09734165047449,2.57575567634187,0.872389432677388,2.26725566213286,0.727752183563449,1.16214518452842,2.87817521615278,0.619412741790207,0.863077176966451,2.0492856522328,0.236482229888585,0.689491361473237,1.93645405075148,0,0.376484679085209,1.36453075028923,0.674170453335254,1.22433556948361,1.60464513538047,0,0.659702600373432,0.997318288108159,1.27867425159808,2.90209238628584,1.70215567407342,0.622822248995575,1.00499466102697,1.0429658368404,0.217188844705117,2.42159801053347,1.47311054395026,2.21523671208619,0,0,0.419317291016752,0,0,0,0,0,0,0,1.09227722252426,0,0.426730222566507,0.400395987036012,0.574752439954483,0,0,1.70763890732835,4.11066032559657,0.764546456250458,0,11.7706798226123,0,79.6674568961024,94.7155938225487,93.9598850427757,50.6575081033755,72.0288209260235,68.1764840258016,83.7754932154019,55.1481761581609,65.107905551939,68.2324395317553,78.2623166280895,69.2974039715903,69.8418696396546,37.6562801542418,40.3471025967339,47.2379029748136,68.656678744034,83.2051975359008,70.0388009493344,50.422657500417,77.4105397075881,68.725489096526,72.1106122255583,76.4556994377832,69.6659295626368,70.3334512891797,65.1990265606756,67.9608905229962,102.443195772924,66.7711850764128,73.9015197228942,74.1912815067015,91.731987153743,77.4810560772975,0,0,0,0,0,0,0,0,0,0,0.43917392846563,1.17881167947941,0,0,0.649094787309367,1.21890816109487,0.26591592103773,0.476981248610684,1.14398982156026,1.85728750664782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.87780264148325,0,0,0,0,0,1.06400514659507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168336113954066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,1.03993478527958,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.621984346622316,0.144119953416961,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20.399496206822,72.3102889941073,94.2292502136091,74.0539319334148,0,0,0,0,0,1.49801404789436,0,4.97298616123243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,43.6280535119292,46.8099815776399,48.8812214739775,0,0,0,0,0,0,0.128139149255701,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.9273691048295,0,0,0,0,0,0,0,0,0,0,0,0.340906509664404,0,0,0,0,0,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6196469961995,0,0,0,0,0,0.211107635297664,0,0,0,0,2.01090682660736,0,1.12972560932135,0,0,0,0,31.9691993816267,21.4098417999865,28.4823593587081,33.3524485640905,34.5544309392403,23.9935125141305,30.2417604853344,40.4493839910078,0,0,0,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.73254089635947,0,1.44876399560722,0,0,0.593929361665277,0,0,0.281338832821026,0,5.76813559793659,0,2.59022384726391,19.6161580027115,0.251932747854276,0,0,0,0,0,0,2.17015492401254,45.5017875459186,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0.219385397153973,0,0,1.07730361905316,0,0,0,0,0.31900115973192,0,0,3.06579894587209,0,0,0,0,0,0,0,0,0,0,0,2.98578579323551,2.65372693510018,3.66618086960175,0,0.123563938946503,0,0.134802265961354,0,0,0,0,0,0,4.83962864194656,0,1.83241080922615,0,0,0,0,0,0,0,0,0,0,0,1.39781334593624,0,0,0,0.0821154570532092,0.872901148395775,0,0,0,0,0.126621591911757,0,0,4.0556069000477,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.8402114799552,1.11712960508902,0.687481272035051,0.717873024576814,0.199679000498991,0,0.669514372325618,0.134366944973453,0,0,0.0787831823072236,0,0.0674035438541849,0,0.0846733320657845,0,0.272406812223151,0,0.137539436597234,0,1.349843349309,0,0,0,1.02447419488958,0.0524545881349981,0,0,0,0.714695326373367,0.662091970365432,0,0,0,0,0,0,0,0,0.879313402068495,3.97520666736664,0,0.26446520348538,0,0,4.59185874041087,1.41483874589699,2.48543433208317,28.2814632432812,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0.110929051536852,0.310482014706917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.50748555910899,1.86010776438708,3.59843867362857,0,0,0,17.7988782310888,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,1.41696576325585,0,0.205116364240755,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0.376051641746286,0,0,0,0,0,0.202612753855184,0,0,0,0,0.548257766857182,0.992422356778588,0,0,0,0,0.606965604236632,0,0.0887023701626388,0,0,0,0,0,0,0.627944742804112,0.314231179832004,0,1.82631744101899,0,0,0.857718530119876,0,0,0,0,0,0,0,0,0,0,1.27016115057279,0,0,0,0,0.294450700845729,0,0,0.513314034281235,0,0,0,0,0,0,0,0,3.00979216620984,1.31135736302374,0,0.735444965261716,0,0.392616934229891,1.18818560130834,0,0,7.14277776646887,4.25422060625609,0,0,0,0,0.730336388246517,5.96348068425903,0.716697915757256,0,0,0,4.7612415646386,0,0,0,0,0.109265571963696,0,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| |||
|short_description=p3@SPATA13 | |||
}} |
Latest revision as of 21:20, 16 September 2015
Short description: | p3@SPATA13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SPATA13_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 0bp_to_ENST00000434675, ENST00000438694, ENST00000494772, uc010tcy.1, uc010tcz.1_5end |
EntrezGene: | SPATA13 |
HGNC: | 23222 |
UniProt: | Q96N96 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 2.38e-33 | 136 |
T cell | 1.02e-32 | 25 |
pro-T cell | 1.02e-32 | 25 |
mature alpha-beta T cell | 1.44e-30 | 18 |
alpha-beta T cell | 1.44e-30 | 18 |
immature T cell | 1.44e-30 | 18 |
mature T cell | 1.44e-30 | 18 |
immature alpha-beta T cell | 1.44e-30 | 18 |
nongranular leukocyte | 3.44e-26 | 115 |
hematopoietic stem cell | 2.86e-23 | 168 |
hematopoietic lineage restricted progenitor cell | 1.02e-21 | 120 |
hematopoietic cell | 4.04e-21 | 177 |
lymphoid lineage restricted progenitor cell | 2.50e-20 | 52 |
hematopoietic oligopotent progenitor cell | 5.32e-20 | 161 |
hematopoietic multipotent progenitor cell | 5.32e-20 | 161 |
lymphocyte | 9.14e-20 | 53 |
common lymphoid progenitor | 9.14e-20 | 53 |
CD8-positive, alpha-beta T cell | 2.47e-19 | 11 |
CD4-positive, alpha-beta T cell | 1.67e-11 | 6 |
myeloid leukocyte | 1.32e-08 | 72 |
classical monocyte | 3.61e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.61e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 5.07e-15 | 98 |
blood island | 5.07e-15 | 98 |
hemolymphoid system | 1.81e-14 | 108 |
blood | 3.52e-14 | 15 |
haemolymphatic fluid | 3.52e-14 | 15 |
organism substance | 3.52e-14 | 15 |
hemopoietic organ | 3.94e-08 | 7 |
immune organ | 3.94e-08 | 7 |
thymus | 3.67e-07 | 4 |
hemolymphoid system gland | 3.67e-07 | 4 |
thymic region | 3.67e-07 | 4 |
pharyngeal gland | 3.67e-07 | 4 |
thymus primordium | 3.67e-07 | 4 |
immune system | 3.86e-07 | 93 |