FFCP PHASE1:Hg19::chr1:160765919..160765926,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4063 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6730 | |||
|TSSclassifier=strong | |||
|UniProt=E7EME5,Q5VYI1,Q9HBG7,Q6P2J4,Q05CA2 | |||
|association_with_transcript=-1bp_to_ENST00000341032,ENST00000368040,ENST00000368041,NM_001033667,NM_002348,uc001fwt.2,uc001fwu.2,uc001fwv.2,uc001fww.2,uc001fwx.2,uc010pjs.1_5end | |||
|cluster_id=chr1:160765919..160765926,+ | |||
|coexpression_cluster_id=C179 | |||
|description=CAGE_peak_4_at_LY9_5end | |||
|id=chr1:160765919..160765926,+ | |||
|ontology_enrichment_celltype=CL:0002087!1.27e-58!119;CL:0000738!1.70e-54!140;CL:0002031!1.27e-49!124;CL:0000037!9.77e-43!172;CL:0000566!9.77e-43!172;CL:0000542!1.83e-42!53;CL:0000051!1.83e-42!53;CL:0000838!3.32e-41!52;CL:0000988!4.09e-39!182;CL:0002032!3.10e-38!165;CL:0000837!3.10e-38!165;CL:0000945!2.37e-22!24;CL:0000826!2.37e-22!24;CL:0000791!9.06e-22!18;CL:0000789!9.06e-22!18;CL:0002420!9.06e-22!18;CL:0002419!9.06e-22!18;CL:0000790!9.06e-22!18;CL:0000084!1.77e-18!25;CL:0000827!1.77e-18!25;CL:0000236!1.28e-17!14;CL:0002057!1.51e-15!42;CL:0002194!2.29e-15!63;CL:0000576!2.29e-15!63;CL:0000040!2.29e-15!63;CL:0000559!2.29e-15!63;CL:0002009!1.23e-14!65;CL:0000766!2.83e-14!76;CL:0000860!4.68e-14!45;CL:0000839!5.15e-14!70;CL:0000557!1.07e-13!71;CL:0000625!3.46e-12!11;CL:0000624!5.41e-10!6;CL:0000134!2.48e-09!358;CL:0002320!8.65e-09!365;CL:0000763!3.51e-08!112;CL:0000049!3.51e-08!112;CL:0000219!6.33e-07!390 | |||
|ontology_enrichment_celltype_v019=CL:0000236;2.46e-25;13!CL:0000945;3.32e-23;24!CL:0000542;4.85e-21;53!CL:0000625;7.36e-18;11!CL:0000791;1.21e-13;18!CL:0000789;1.21e-13;18!CL:0002419;1.21e-13;18!CL:0000084;4.78e-12;25!CL:0002087;6.95e-09;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,2.60e-31,52;CL:0000542,1.27e-30,53;CL:0000051,1.27e-30,53;CL:0000236,3.80e-29,14;CL:0002087,3.11e-28,115;CL:0000945,1.62e-23,24;CL:0000826,1.62e-23,24;CL:0002031,4.77e-23,120;CL:0000738,8.73e-23,136;CL:0000625,4.11e-18,11;CL:0000037,4.26e-17,168;CL:0000988,7.21e-16,177;CL:0002032,1.78e-15,161;CL:0000837,1.78e-15,161;CL:0000791,7.81e-14,18;CL:0000789,7.81e-14,18;CL:0002420,7.81e-14,18;CL:0002419,7.81e-14,18;CL:0000790,7.81e-14,18;CL:0000084,3.65e-12,25;CL:0000827,3.65e-12,25 | |||
|ontology_enrichment_development_v019=CL:0000051;4.85e-21;53!CL:0000790;1.21e-13;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.65e-24!102;UBERON:0003061!2.65e-24!102;UBERON:0002193!1.85e-23!112;UBERON:0002405!1.11e-13!115;UBERON:0002371!3.59e-12!80;UBERON:0004177!1.03e-11!7;UBERON:0001474!9.91e-11!86;UBERON:0002384!4.66e-08!375;UBERON:0004765!6.10e-08!101;UBERON:0001434!6.10e-08!101;UBERON:0003408!1.02e-07!10;UBERON:0000178!1.03e-07!15;UBERON:0000179!1.03e-07!15;UBERON:0000463!1.03e-07!15;UBERON:0002370!1.42e-07!4;UBERON:0005058!1.42e-07!4;UBERON:0009113!1.42e-07!4;UBERON:0003295!1.42e-07!4;UBERON:0005562!1.42e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0004177;3.62e-08;5!UBERON:0005057;3.62e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004177,1.07e-09,7;UBERON:0005057,1.07e-09,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382067028739756,0.246301768349837,0.157421562627358,0,0.767658796194425,0.154816123316076,0,0,0,1.54934401160603,0.426507697462265,0.587200878669695,0,0,0.434021741431704,0,0.32389366601898,0,0,0.377875943688809,0.242584061187816,0.464858073811369,2.46700732813095,0.619412741790207,0,0.512321413058201,0,0,3.22742341791913,0,0.188242339542605,2.72906150057846,1.57306439111559,0.918251677112708,3.85114832491312,0.639337125799041,0,0.199463657621632,0.426224750532694,0,2.26954089876456,0,0.251248665256743,0.521482918420201,0.434377689410233,0,0.736555271975129,0.316462387440884,0,0,0,0,0,0.16072558669708,0,0.19891667719909,0,1.75996244461323,1.63841583378639,1.77901850772711,1.70692089026603,0.800791974072025,4.02326707968138,1.32208974556972,0.954053754535364,5.12291672198504,11.7447437874188,16.0554755812596,1.32171328579026,2.80254281490768,0,0.590129310341499,0.786021525498329,0.616804496998528,0,0.977766799900771,1.89379122293893,0,0,0.883817722424512,1.10766947291811,0.270803863765016,0,0,0,0,0,1.18629250529648,1.33770414044857,2.09071047609954,0.113309342697566,1.53288197440768,1.71813722741315,3.03623630423403,1.91139248594458,1.30216690771284,0,1.35517607169996,1.66382594500744,2.49861453104692,2.8413270245282,2.46338399076314,0.604820229674197,0.267440195783507,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,1.29818957461873,0.174129737299267,0.531831842075461,0.476981248610684,0,0.74291500265913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492434012174795,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43247561282381,0,0,0,0,0,0,0,0,0.784596007954691,0.591092280605782,0,0.385029108839245,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24060815673732,0.647142602455851,1.17400313583789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0.507447609232169,0.764637207142375,0,0.714695326373367,0.822724546172388,0.648473311192717,2.16012574895246,0,0,0,0,0.557409525377156,0,0,0.318852545457645,0,0,0,0,0,0.228234679033192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.597743964753209,0.828851746593443,0,0,5.90807066213134,0,0,0,0,3.74844941420348,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307801034015188,0,0,0,0,0,0,0,2.04386596391473,0,0,0,0,0,0,0,0,0,0,0,0,0.530745387020035,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.484945082442097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0.533937062838473,0,0,0.992332043623902,0.197611631897944,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265729680626726,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09651553371436,0,0,0,0,0,0,0,0,1.49804183822513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12780701575824,3.60964172652032,0.0999411559249289,0,0,0,0,0.917458566809082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,1.0661699095049,0,0.968833647540092,1.36564371450887,0,0.0636471582781649,0,0,0,2.42467390852515,0.286888821570705,0,0,0,0,0,0,0,0,0,0.603821380773079,0.320568492303233 | |||
|short_description=p4@LY9 | |||
}} |
Latest revision as of 03:39, 18 September 2015
Short description: | p4@LY9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LY9_5end |
Coexpression cluster: | C179_CD19_Peripheral_lymphoma_blood_lymph_spleen_tonsil |
Association with transcript: | -1bp_to_ENST00000341032, ENST00000368040, ENST00000368041, NM_001033667, NM_002348, uc001fwt.2, uc001fwu.2, uc001fwv.2, uc001fww.2, uc001fwx.2, uc010pjs.1_5end |
EntrezGene: | LY9 |
HGNC: | 6730 |
UniProt: | E7EME5Q5VYI1Q9HBG7Q6P2J4Q05CA2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 2.60e-31 | 52 |
lymphocyte | 1.27e-30 | 53 |
common lymphoid progenitor | 1.27e-30 | 53 |
B cell | 3.80e-29 | 14 |
nongranular leukocyte | 3.11e-28 | 115 |
lymphocyte of B lineage | 1.62e-23 | 24 |
pro-B cell | 1.62e-23 | 24 |
hematopoietic lineage restricted progenitor cell | 4.77e-23 | 120 |
leukocyte | 8.73e-23 | 136 |
CD8-positive, alpha-beta T cell | 4.11e-18 | 11 |
hematopoietic stem cell | 4.26e-17 | 168 |
hematopoietic cell | 7.21e-16 | 177 |
hematopoietic oligopotent progenitor cell | 1.78e-15 | 161 |
hematopoietic multipotent progenitor cell | 1.78e-15 | 161 |
mature alpha-beta T cell | 7.81e-14 | 18 |
alpha-beta T cell | 7.81e-14 | 18 |
immature T cell | 7.81e-14 | 18 |
mature T cell | 7.81e-14 | 18 |
immature alpha-beta T cell | 7.81e-14 | 18 |
T cell | 3.65e-12 | 25 |
pro-T cell | 3.65e-12 | 25 |
Ontology term | p-value | n |
---|---|---|
hemopoietic organ | 1.07e-09 | 7 |
immune organ | 1.07e-09 | 7 |