FFCP PHASE1:Hg19::chr1:194044889..194044892,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr1:194044889..194044892,+ | |||
|description=CAGE_peak_at_chr1:194044889..194044892,+ | |||
|id=chr1:194044889..194044892,+ | |||
|ontology_enrichment_celltype=CL:0002274!1.74e-12!5;CL:0000457!1.74e-12!5;CL:0002191!1.74e-12!5;CL:0000097!1.74e-12!5;CL:0000831!1.74e-12!5;CL:0002028!1.74e-12!5;CL:0000163!1.45e-09!9;CL:0000791!2.02e-09!18;CL:0000789!2.02e-09!18;CL:0002420!2.02e-09!18;CL:0002419!2.02e-09!18;CL:0000790!2.02e-09!18;CL:0000084!6.72e-08!25;CL:0000827!6.72e-08!25;CL:0000624!3.57e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0002127;1.66e-15;1!CL:0000911;1.66e-15;1!CL:0002591;1.66e-15;1!CL:0000814;1.66e-15;1!CL:0000624;1.53e-10;6!CL:0000084;2.05e-09;25!CL:0000815;1.29e-08;2!CL:0000792;1.29e-08;2!CL:0002677;1.29e-08;2!CL:0000047;2.07e-08;2!CL:0000791;9.66e-08;18!CL:0000789;9.66e-08;18!CL:0002419;9.66e-08;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0002127,9.99e-16,1;CL:0000914,9.99e-16,1;CL:0000911,9.99e-16,1;CL:0000814,9.99e-16,1;CL:0002042,9.99e-16,1;CL:0002039,9.99e-16,1;CL:0002040,9.99e-16,1;CL:0002041,9.99e-16,1;CL:0002591,2.75e-15,1;CL:0000624,1.43e-10,6;CL:0000084,1.73e-09,25;CL:0000827,1.73e-09,25;CL:0000815,1.29e-08,2;CL:0000792,1.29e-08,2;CL:0002677,1.29e-08,2;CL:0000893,1.61e-08,2;CL:0002489,1.61e-08,2;CL:0000809,1.61e-08,2;CL:0000808,1.61e-08,2;CL:0000894,1.61e-08,2;CL:0000806,1.61e-08,2;CL:0000807,1.61e-08,2;CL:0000805,1.61e-08,2;CL:0002425,1.61e-08,2;CL:0000791,8.61e-08,18;CL:0000789,8.61e-08,18;CL:0002420,8.61e-08,18;CL:0002419,8.61e-08,18;CL:0000790,8.61e-08,18 | |||
|ontology_enrichment_development_v019=UBERON:0006242;1.66e-15;1!CL:0002425;2.07e-08;2!CL:0000790;9.66e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0000078;2.07e-08;2!UBERON:0002012;2.07e-08;2!UBERON:0008886;2.07e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003351,2.09e-10,6;UBERON:0000078,2.67e-08,2;UBERON:0007497,2.67e-08,2;UBERON:0003643,2.67e-08,2;UBERON:0003504,2.67e-08,2;UBERON:0003469,2.67e-08,2;UBERON:0003496,2.67e-08,2;UBERON:0002012,2.67e-08,2;UBERON:0008886,2.67e-08,2;UBERON:0007303,2.67e-08,2;UBERON:0002061,2.67e-08,2;UBERON:0005432,2.67e-08,2;UBERON:0004363,2.67e-08,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0.257575567634187,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393419540227666,0,1.43921049299656,0,0.651844533267181,0,1.94826728407911,0.668462741311041,2.06224135232386,1.10766947291811,3.24964636518019,0.640456598628376,0.260118695119756,0.657751618414705,0.552700035571697,0,0,0,0,0.906474741580529,0,0,0.253019692019503,0,0,0,0.150575119077773,0,0,0.236777252044017,0,0.201606743224732,0,0.289648807765598,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.985326475791887,0.176096868026452,0.414656231081544,0.720599767084807,1.00993946741104,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45710687191585,0.197030760201927,0,0.128343036279748,0,1.30139853857622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.9273691048295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13008116620243,0,0,0,0,0,0,0.30982349809975,0.281695602532241,0,0,0,0,0,0,0,0,0,0,0,0.941438007767792,0,0,0,0,0,0,0,0.238231775457789,0,0,0.540031437238115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0.121360521749513,1.44876399560722,0,0,0,0,0,0.422008249231538,0.111308705022906,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.156980256395025,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296521128680622,0,0,0,0.802577647298789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0,0,0.225980740780532,0.137041924646751,0,0,0,0,1.92107695265417,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0.439656701034247,0,0,0.26446520348538,0,0,0,0,0.414239055347196,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0.500763722825999,0,0,0,0,0,0.151649117541648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0.132864840313363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0,1.41696576325585,0,0,0.252071696221718,0,0.161475645631851,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0.0675375846183947,0.781078098613847,0.206686796501184,0,0,0,0,0,0,0,0.336283722218824,0,0,0,0,0,0,0.0657727735628491,0,0,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121917924982269,0,0,1.1598144313382,0.485710993059139,0,0,0,0,0,0,0,0.218559560503957,0,0,0.942706188406504,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872701380680755,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131862580613,0.0636471582781649,0,0.217716747896961,0,0.134704106029175,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr1:194044889..194044892,+ | |||
}} |
Latest revision as of 01:45, 28 July 2015
Short description: | p@chr1:194044889..194044892, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:194044889..194044892, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
innate effector T cell | 9.99e-16 | 1 |
immature NK T cell | 9.99e-16 | 1 |
effector T cell | 9.99e-16 | 1 |
mature NK T cell | 9.99e-16 | 1 |
immature NK T cell stage IV | 9.99e-16 | 1 |
immature NK T cell stage I | 9.99e-16 | 1 |
immature NK T cell stage II | 9.99e-16 | 1 |
immature NK T cell stage III | 9.99e-16 | 1 |
smooth muscle cell of the pulmonary artery | 2.75e-15 | 1 |
CD4-positive, alpha-beta T cell | 1.43e-10 | 6 |
T cell | 1.73e-09 | 25 |
pro-T cell | 1.73e-09 | 25 |
regulatory T cell | 1.29e-08 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.29e-08 | 2 |
naive regulatory T cell | 1.29e-08 | 2 |
thymocyte | 1.61e-08 | 2 |
double negative thymocyte | 1.61e-08 | 2 |
double-positive, alpha-beta thymocyte | 1.61e-08 | 2 |
DN4 thymocyte | 1.61e-08 | 2 |
DN1 thymic pro-T cell | 1.61e-08 | 2 |
DN2 thymocyte | 1.61e-08 | 2 |
DN3 thymocyte | 1.61e-08 | 2 |
immature single positive thymocyte | 1.61e-08 | 2 |
early T lineage precursor | 1.61e-08 | 2 |
mature alpha-beta T cell | 8.61e-08 | 18 |
alpha-beta T cell | 8.61e-08 | 18 |
immature T cell | 8.61e-08 | 18 |
mature T cell | 8.61e-08 | 18 |
immature alpha-beta T cell | 8.61e-08 | 18 |
Ontology term | p-value | n |
---|---|---|
pharyngeal epithelium | 2.09e-10 | 6 |
mixed ectoderm/mesoderm/endoderm-derived structure | 2.67e-08 | 2 |
developing epithelial placode | 2.67e-08 | 2 |
respiratory system arterial blood vessel | 2.67e-08 | 2 |
respiratory system blood vessel | 2.67e-08 | 2 |
respiratory system artery | 2.67e-08 | 2 |
head blood vessel | 2.67e-08 | 2 |
pulmonary artery | 2.67e-08 | 2 |
pulmonary vascular system | 2.67e-08 | 2 |
pharyngeal vasculature | 2.67e-08 | 2 |
truncus arteriosus | 2.67e-08 | 2 |
aortic sac | 2.67e-08 | 2 |
pharyngeal arch artery | 2.67e-08 | 2 |