FFCP PHASE1:Hg19::chr1:26380381..26380423,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr1:26380381..26380423,+ | |||
|coexpression_cluster_id=C410 | |||
|description=CAGE_peak_at_chr1:26380381..26380423,+ | |||
|id=chr1:26380381..26380423,+ | |||
|ontology_enrichment_celltype=CL:0000148!1.61e-19!10;CL:0000541!1.61e-19!10;CL:0000147!1.87e-18!14;CL:0002274!2.91e-17!5;CL:0000457!2.91e-17!5;CL:0002191!2.91e-17!5;CL:0000097!2.91e-17!5;CL:0000831!2.91e-17!5;CL:0002028!2.91e-17!5;CL:0000163!1.17e-09!9;CL:0000710!1.80e-09!20;CL:0002567!2.84e-08!3;CL:0002566!4.69e-07!1;CL:0000075!7.36e-07!27 | |||
|ontology_enrichment_celltype_v019=CL:0002566;9.48e-18;1!CL:0000148;2.07e-15;10!CL:0000147;3.41e-11;14!CL:0000710;5.22e-08;20!CL:0002567;8.86e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002566,1.03e-17,1;CL:0000148,2.02e-15,10;CL:0000541,2.02e-15,10;CL:0000147,3.36e-11,14;CL:0000710,5.16e-08,20;CL:0002567,9.64e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0010227;3.44e-18;1!UBERON:0010226;3.44e-18;1 | |||
|ontology_enrichment_disease=DOID:114!1.36e-12!2;DOID:178!4.18e-07!1;DOID:326!4.18e-07!1;DOID:3978!4.18e-07!1;DOID:3394!4.18e-07!1;DOID:5844!4.18e-07!1 | |||
|ontology_enrichment_disease_v019=DOID:114;1.17e-33;2!DOID:178;9.48e-18;1!DOID:326;9.48e-18;1!DOID:3978;9.48e-18;1!DOID:3394;9.48e-18;1!DOID:5844;9.48e-18;1!DOID:1287;2.19e-17;4 | |||
|ontology_enrichment_disease_v019_2=DOID:114,5.07e-34,2;DOID:178,7.37e-18,1;DOID:326,7.37e-18,1;DOID:3978,7.37e-18,1;DOID:3394,7.37e-18,1;DOID:5844,7.37e-18,1;DOID:1287,1.45e-17,4 | |||
|ontology_enrichment_uberon=UBERON:0004151!6.18e-18!3;UBERON:0003978!2.95e-17!3;UBERON:0009751!2.95e-17!3;UBERON:0000946!2.95e-17!3;UBERON:0002523!2.95e-17!3;UBERON:0005983!2.95e-17!3;UBERON:0002165!2.95e-17!3;UBERON:0002062!2.95e-17!3;UBERON:0007280!2.95e-17!3;UBERON:0002081!2.02e-12!2;UBERON:0001630!2.40e-12!2;UBERON:0005090!2.40e-12!2;UBERON:0007100!3.27e-12!27;UBERON:0002133!5.53e-12!2;UBERON:0000341!1.01e-11!2;UBERON:0001723!1.83e-08!3;UBERON:0001033!1.83e-08!3;UBERON:0010056!1.83e-08!3;UBERON:0000948!6.84e-08!24;UBERON:0005498!6.84e-08!24;UBERON:0004140!6.84e-08!24;UBERON:0009881!6.84e-08!24;UBERON:0004141!6.84e-08!24;UBERON:0003084!6.84e-08!24;UBERON:0007005!6.84e-08!24;UBERON:0004139!6.84e-08!24;UBERON:0004291!6.84e-08!24;UBERON:0007023!1.29e-07!115;UBERON:0002084!3.13e-07!1;UBERON:0002082!3.13e-07!1;UBERON:0004706!3.13e-07!1;UBERON:0002079!3.32e-07!1;UBERON:0002426!3.52e-07!1;UBERON:0003831!3.52e-07!1;UBERON:0003898!3.52e-07!1;UBERON:0004830!3.52e-07!1;UBERON:0001774!3.52e-07!1;UBERON:0003830!3.52e-07!1;UBERON:0005175!3.52e-07!1;UBERON:0003897!3.52e-07!1;UBERON:0001103!3.52e-07!1;UBERON:0010084!3.52e-07!1;UBERON:0002146!5.57e-07!1;UBERON:0005623!5.57e-07!1;UBERON:0000989!5.89e-07!1;UBERON:0008811!5.89e-07!1;UBERON:0006258!5.89e-07!1;UBERON:0005876!5.89e-07!1;UBERON:0004874!5.89e-07!1;UBERON:0002134!6.99e-07!1;UBERON:0005208!6.99e-07!1;UBERON:0005946!6.99e-07!1;UBERON:0005965!6.99e-07!1;UBERON:0002078!6.99e-07!1;UBERON:0005418!7.82e-07!1;UBERON:0001389!7.82e-07!1;UBERON:0000026!7.82e-07!1;UBERON:0008784!7.82e-07!1;UBERON:0006058!7.82e-07!1;UBERON:0003663!7.82e-07!1;UBERON:0001383!7.82e-07!1;UBERON:0004256!7.82e-07!1;UBERON:0002529!7.82e-07!1;UBERON:0004708!7.82e-07!1;UBERON:0002101!7.82e-07!1;UBERON:0004709!7.82e-07!1;UBERON:0003661!7.82e-07!1;UBERON:0002471!7.82e-07!1;UBERON:0004357!7.82e-07!1;UBERON:0009872!7.82e-07!1;UBERON:0004347!7.82e-07!1;UBERON:0005420!7.82e-07!1;UBERON:0005732!7.82e-07!1;UBERON:0006057!7.82e-07!1;UBERON:0000978!7.82e-07!1;UBERON:0002103!7.82e-07!1;UBERON:0001665!7.82e-07!1;UBERON:0003823!7.82e-07!1;UBERON:0000154!7.82e-07!1;UBERON:0005733!7.82e-07!1;UBERON:0005730!7.82e-07!1;UBERON:0002135!9.25e-07!1;UBERON:0007029!9.79e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0004151;2.10e-23;3!UBERON:0002084;3.44e-18;1!UBERON:0002079;3.44e-18;1!UBERON:0002082;3.44e-18;1!UBERON:0002426;4.44e-18;1!UBERON:0003831;4.44e-18;1!UBERON:0003898;4.44e-18;1!UBERON:0004830;4.44e-18;1!UBERON:0003830;4.44e-18;1!UBERON:0005175;4.44e-18;1!UBERON:0001774;4.44e-18;1!UBERON:0001103;4.44e-18;1!UBERON:0002146;9.48e-18;1!UBERON:0005623;9.48e-18;1!UBERON:0007100;1.22e-16;25!UBERON:0001134;4.98e-10;16!UBERON:0002036;4.98e-10;16!UBERON:0002081;9.06e-10;2!UBERON:0005090;1.03e-09;2!UBERON:0001630;1.03e-09;2!UBERON:0000948;1.92e-07;22!UBERON:0001723;8.86e-07;3!UBERON:0003978;8.86e-07;3!UBERON:0000946;8.86e-07;3!UBERON:0001033;8.86e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004151,2.10e-23,3;UBERON:0002084,3.16e-18,1;UBERON:0002082,3.16e-18,1;UBERON:0010226,3.16e-18,1;UBERON:0002079,3.75e-18,1;UBERON:0002426,4.44e-18,1;UBERON:0003831,4.44e-18,1;UBERON:0003898,4.44e-18,1;UBERON:0004830,4.44e-18,1;UBERON:0003830,4.44e-18,1;UBERON:0005175,4.44e-18,1;UBERON:0001774,4.44e-18,1;UBERON:0001103,4.44e-18,1;UBERON:0010084,4.44e-18,1;UBERON:0002146,1.70e-17,1;UBERON:0005623,1.70e-17,1;UBERON:0007100,1.95e-15,27;UBERON:0002081,9.46e-10,2;UBERON:0010227,9.46e-10,2;UBERON:0005090,1.03e-09,2;UBERON:0001630,1.03e-09,2;UBERON:0003103,1.37e-08,68;UBERON:0000948,7.77e-07,24;UBERON:0005498,7.77e-07,24;UBERON:0004140,7.77e-07,24;UBERON:0009881,7.77e-07,24;UBERON:0004141,7.77e-07,24;UBERON:0003084,7.77e-07,24;UBERON:0007005,7.77e-07,24;UBERON:0004139,7.77e-07,24;UBERON:0004291,7.77e-07,24;UBERON:0001723,8.62e-07,3;UBERON:0001033,8.62e-07,3;UBERON:0010056,8.62e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.44024217006613,0.207328115540772,0.720599767084807,0.12624243342638,1.33345578013555,0.381988425558278,1.17217447210047,0,0.411309970813294,0.901029173531752,1.71495859578347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325378394664303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0.296521128680622,0,0,0,2.40773294189637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.558564802544508,1.14580212005842,0.717873024576814,1.39775300349294,1.71690419254628,0,0.604651252380536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.00286728461357,5.95882773328889,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.992422356778588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.647428837187895,6.7757452525123,1.1598144313382,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426467963801962,0.476128862927481,0,0,0,0,0,0.653150243690884,1.36893320434112,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr1:26380381..26380423,+ | |||
}} |
Latest revision as of 06:32, 28 July 2015
Short description: | p@chr1:26380381..26380423, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:26380381..26380423, + |
Coexpression cluster: | C410_skeletal_left_heart_penis_diaphragm_throat_tongue |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
dark melanocyte | 1.03e-17 | 1 |
melanocyte | 2.02e-15 | 10 |
melanoblast | 2.02e-15 | 10 |
pigment cell | 3.36e-11 | 14 |
neurecto-epithelial cell | 5.16e-08 | 20 |
light melanocyte | 9.64e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
cardiac chamber | 2.10e-23 | 3 |
heart left ventricle | 3.16e-18 | 1 |
cardiac ventricle | 3.16e-18 | 1 |
future cardiac ventricle | 3.16e-18 | 1 |
left cardiac atrium | 3.75e-18 | 1 |
chest muscle | 4.44e-18 | 1 |
respiratory system muscle | 4.44e-18 | 1 |
skeletal muscle of trunk | 4.44e-18 | 1 |
respiratory system skeletal muscle | 4.44e-18 | 1 |
thoracic segment muscle | 4.44e-18 | 1 |
chest organ | 4.44e-18 | 1 |
muscle of trunk | 4.44e-18 | 1 |
diaphragm | 4.44e-18 | 1 |
future diaphragm | 4.44e-18 | 1 |
pulmonary valve | 1.70e-17 | 1 |
semi-lunar valve | 1.70e-17 | 1 |
primary circulatory organ | 1.95e-15 | 27 |
cardiac atrium | 9.46e-10 | 2 |
future cardiac atrium | 9.46e-10 | 2 |
muscle structure | 1.03e-09 | 2 |
muscle organ | 1.03e-09 | 2 |
compound organ | 1.37e-08 | 68 |
heart | 7.77e-07 | 24 |
primitive heart tube | 7.77e-07 | 24 |
primary heart field | 7.77e-07 | 24 |
anterior lateral plate mesoderm | 7.77e-07 | 24 |
heart tube | 7.77e-07 | 24 |
heart primordium | 7.77e-07 | 24 |
cardiac mesoderm | 7.77e-07 | 24 |
cardiogenic plate | 7.77e-07 | 24 |
heart rudiment | 7.77e-07 | 24 |
tongue | 8.62e-07 | 3 |
gustatory system | 8.62e-07 | 3 |
future tongue | 8.62e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
heart disease | 5.07e-34 | 2 |
vascular disease | 7.37e-18 | 1 |
ischemia | 7.37e-18 | 1 |
extrinsic cardiomyopathy | 7.37e-18 | 1 |
myocardial ischemia | 7.37e-18 | 1 |
myocardial infarction | 7.37e-18 | 1 |
cardiovascular system disease | 1.45e-17 | 4 |