FFCP PHASE1:Hg19::chr2:182543197..182543218,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4760 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=7762 | |||
|TSSclassifier=strong | |||
|UniProt=Q13562 | |||
|association_with_transcript=-46bp_to_U36472_5end | |||
|cluster_id=chr2:182543197..182543218,- | |||
|coexpression_cluster_id=C939 | |||
|description=CAGE_peak_4_at_NEUROD1_5end | |||
|id=chr2:182543197..182543218,- | |||
|ontology_enrichment_celltype=CL:0000540!7.68e-08!6;CL:0000031!7.68e-08!6;CL:0000404!7.68e-08!6 | |||
|ontology_enrichment_celltype_v019=CL:0000540;3.31e-08;6!CL:0000404;3.31e-08;6!CL:0002535;6.24e-07;2!CL:0002319;9.13e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,3.25e-08,6;CL:0000031,3.25e-08,6;CL:0000404,3.25e-08,6;CL:0002535,6.80e-07,2;CL:0002319,8.85e-07,25 | |||
|ontology_enrichment_development_v019=UBERON:0006215;3.07e-34;3!CL:0000031;3.31e-08;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3119;1.07e-07;14!DOID:154;8.29e-07;2!DOID:4236;8.29e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3119,1.06e-07,14;DOID:154,8.52e-07,2;DOID:4236,8.52e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0005743!3.17e-25!86;UBERON:0000073!1.23e-24!94;UBERON:0001016!1.23e-24!94;UBERON:0001017!2.78e-24!82;UBERON:0003075!1.12e-18!86;UBERON:0007284!1.12e-18!86;UBERON:0002346!1.20e-17!90;UBERON:0000955!2.61e-17!69;UBERON:0006238!2.61e-17!69;UBERON:0004121!4.22e-15!169;UBERON:0001049!9.40e-15!57;UBERON:0005068!9.40e-15!57;UBERON:0006241!9.40e-15!57;UBERON:0007135!9.40e-15!57;UBERON:0000924!1.29e-14!173;UBERON:0006601!1.29e-14!173;UBERON:0002616!3.75e-14!59;UBERON:0004733!8.16e-14!12;UBERON:0002028!8.16e-14!12;UBERON:0007277!8.16e-14!12;UBERON:0004732!1.05e-12!13;UBERON:0000033!1.17e-11!123;UBERON:0003076!6.27e-11!15;UBERON:0003057!6.27e-11!15;UBERON:0000153!6.53e-11!129;UBERON:0007811!6.53e-11!129;UBERON:0001905!1.01e-10!2;UBERON:0002757!1.01e-10!2;UBERON:0010134!1.01e-10!2;UBERON:0002784!1.01e-10!2;UBERON:0005408!1.01e-10!2;UBERON:0001899!1.01e-10!2;UBERON:0002360!4.85e-10!2;UBERON:0000094!4.85e-10!2;UBERON:0007645!4.85e-10!2;UBERON:0003056!7.36e-10!61;UBERON:0007023!5.31e-09!115;UBERON:0002680!6.65e-09!9;UBERON:0001895!6.65e-09!9;UBERON:0010092!6.65e-09!9;UBERON:0002037!4.07e-08!6;UBERON:0006215!4.07e-08!6;UBERON:0002780!2.28e-07!41;UBERON:0001890!2.28e-07!41;UBERON:0006240!2.28e-07!41;UBERON:0003080!3.65e-07!42;UBERON:0001896!5.72e-07!3;UBERON:0005290!5.72e-07!3;UBERON:0010096!5.72e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;1.66e-22;2!UBERON:0002757;1.66e-22;2!UBERON:0010134;1.66e-22;2!UBERON:0005408;1.66e-22;2!UBERON:0001899;1.66e-22;2!UBERON:0002037;1.80e-17;6!UBERON:0002680;7.57e-12;9!UBERON:0001895;7.57e-12;9!UBERON:0003296;9.37e-12;4!UBERON:0010133;9.37e-12;4!UBERON:0002784;9.37e-12;4!UBERON:0004733;5.10e-09;12!UBERON:0002028;5.10e-09;12!UBERON:0004732;2.30e-08;13!UBERON:0001894;4.29e-07;7!UBERON:0006955;6.24e-07;2!UBERON:0004801;6.24e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,1.66e-22,2;UBERON:0002757,1.66e-22,2;UBERON:0010134,1.66e-22,2;UBERON:0005408,1.66e-22,2;UBERON:0001899,1.66e-22,2;UBERON:0002037,1.90e-17,6;UBERON:0006215,1.90e-17,6;UBERON:0002680,7.85e-12,9;UBERON:0001895,7.85e-12,9;UBERON:0010092,7.85e-12,9;UBERON:0003296,9.37e-12,4;UBERON:0010133,9.37e-12,4;UBERON:0002784,9.37e-12,4;UBERON:0001016,1.06e-10,89;UBERON:0001017,1.17e-09,81;UBERON:0004733,5.24e-09,12;UBERON:0002028,5.24e-09,12;UBERON:0007277,5.24e-09,12;UBERON:0004732,2.36e-08,13;UBERON:0003076,2.65e-07,15;UBERON:0003057,2.65e-07,15;UBERON:0000955,4.06e-07,68;UBERON:0006238,4.06e-07,68;UBERON:0001894,4.29e-07,7;UBERON:0006222,4.29e-07,7;UBERON:0006955,6.80e-07,2;UBERON:0004801,6.80e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.54657762555539,0.670065061337395,2.55175500661265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.562677665642051,0.111308705022906,0,0,0,0,4.03092396566842,0,0,0,0,0,0,0,0,0,0,0.556608588971108,0,0,0,0,0,0,0,0,2.91604613383254,2.43074992906609,0,0,9.15490417902499,4.53374965718021,2.06883333267483,0.438770794307945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.06765333404958,0,0,0.0633107959558787,0,0,0,0,0,0,1.54435498075768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244052529803926,0,0,0.221858103073705,0.124192805882767,3.18201860353331,0,0,0,0,0,0.28984205722165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.11577485214607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.756215088665154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135075169236789,0,0,0,0,0,0,0,0,1.60710550763486,1.00885116665647,0,0,0,0,0,0.135939465953663,0,0,0,0,0,0,0,0,0,0.428859265059938,4.89842196371452,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.56537558032515,0.118920090777569,0,5.82684738750774,0,0,0.218559560503957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436350690340377,1.5870805215462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p4@NEUROD1 | |||
}} |
Latest revision as of 21:21, 18 September 2015
Short description: | p4@NEUROD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_NEUROD1_5end |
Coexpression cluster: | C939_neuroblastoma_argyrophil_small_cerebellum_retinoblastoma_pineal_medulloblastoma |
Association with transcript: | -46bp_to_U36472_5end |
EntrezGene: | NEUROD1 |
HGNC: | 7762 |
UniProt: | Q13562 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 3.25e-08 | 6 |
neuroblast | 3.25e-08 | 6 |
electrically signaling cell | 3.25e-08 | 6 |
epithelial cell of cervix | 6.80e-07 | 2 |
neural cell | 8.85e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
pineal body | 1.66e-22 | 2 |
regional part of epithalamus | 1.66e-22 | 2 |
secretory circumventricular organ | 1.66e-22 | 2 |
circumventricular organ | 1.66e-22 | 2 |
epithalamus | 1.66e-22 | 2 |
cerebellum | 1.90e-17 | 6 |
rhombic lip | 1.90e-17 | 6 |
regional part of metencephalon | 7.85e-12 | 9 |
metencephalon | 7.85e-12 | 9 |
future metencephalon | 7.85e-12 | 9 |
gland of diencephalon | 9.37e-12 | 4 |
neuroendocrine gland | 9.37e-12 | 4 |
regional part of diencephalon | 9.37e-12 | 4 |
nervous system | 1.06e-10 | 89 |
central nervous system | 1.17e-09 | 81 |
segmental subdivision of hindbrain | 5.24e-09 | 12 |
hindbrain | 5.24e-09 | 12 |
presumptive hindbrain | 5.24e-09 | 12 |
segmental subdivision of nervous system | 2.36e-08 | 13 |
posterior neural tube | 2.65e-07 | 15 |
chordal neural plate | 2.65e-07 | 15 |
brain | 4.06e-07 | 68 |
future brain | 4.06e-07 | 68 |
diencephalon | 4.29e-07 | 7 |
future diencephalon | 4.29e-07 | 7 |
uterine epithelium | 6.80e-07 | 2 |
cervix epithelium | 6.80e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system cancer | 1.06e-07 | 14 |
mixed cell type cancer | 8.52e-07 | 2 |
carcinosarcoma | 8.52e-07 | 2 |