FFCP PHASE1:Hg19::chr9:137582822..137582849,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr9:137582822..137582849,+
|short_description=p8@COL5A1
|description=CAGE_peak_8_at_COL5A1_5end
|association_with_transcript=35bp_to_AB209864_5end
|EntrezGene...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1289 | |EntrezGene=1289 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=2209 | |HGNC=2209 | ||
|TSSclassifier=strong | |||
|UniProt=Q59EE7 | |UniProt=Q59EE7 | ||
|association_with_transcript=35bp_to_AB209864_5end | |||
|cluster_id=chr9:137582822..137582849,+ | |||
|coexpression_cluster_id=C396 | |||
|description=CAGE_peak_8_at_COL5A1_5end | |||
|id=chr9:137582822..137582849,+ | |||
|ontology_enrichment_celltype=CL:0000055!5.85e-26!180;CL:0000057!1.83e-20!75;CL:0002334!7.70e-09!12;CL:0000499!1.60e-07!27;CL:0002620!6.85e-07!23;CL:0002371!7.78e-07!591 | |||
|ontology_enrichment_celltype_v019=CL:0000349;6.05e-18;19!CL:0000134;1.85e-14;55!CL:0002334;6.73e-13;12!CL:0000048;4.62e-12;58!CL:0000723;7.67e-12;61!CL:0000034;4.87e-09;69!CL:0000057;1.26e-08;73!CL:0002320;2.30e-08;188!CL:0002569;1.14e-07;6!CL:0002570;1.28e-07;8!CL:0000499;4.39e-07;28!CL:0002620;4.96e-07;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.89e-23,76;CL:0000349,1.64e-17,19;CL:0000134,6.62e-14,354;CL:0002320,9.64e-14,361;CL:0000048,2.68e-13,427;CL:0002334,4.08e-13,12;CL:0000723,1.06e-12,433;CL:0000034,6.20e-12,441;CL:0000219,6.76e-12,386;CL:0002569,1.81e-07,6;CL:0002570,1.99e-07,8;CL:0002620,3.04e-07,23;CL:0000499,4.83e-07,28 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;3.20e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,6.27e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000478!2.87e-10!24;UBERON:0005631!3.84e-09!14;UBERON:0000158!3.84e-09!14;UBERON:0004872!4.79e-08!84;UBERON:0004923!9.55e-08!57;UBERON:0000914!2.19e-07!83;UBERON:0002329!2.19e-07!83;UBERON:0003077!2.19e-07!83;UBERON:0003059!2.19e-07!83;UBERON:0007282!2.19e-07!83;UBERON:0009618!2.19e-07!83;UBERON:0007285!2.19e-07!83 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;7.10e-15;24!UBERON:0005631;1.60e-10;10!UBERON:0000158;1.60e-10;10!UBERON:0004457;3.22e-09;9!UBERON:0000042;3.22e-09;9!UBERON:0003688;3.74e-09;6!UBERON:0002358;3.74e-09;6!UBERON:0003684;3.74e-09;6!UBERON:0001178;3.74e-09;6!UBERON:0003104;4.73e-09;7!UBERON:0009142;4.73e-09;7!UBERON:0001013;1.20e-08;14!UBERON:0002384;3.11e-08;198!UBERON:0003422;1.14e-07;6!UBERON:0000305;3.49e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000478,1.71e-14,24;UBERON:0002384,2.77e-14,371;UBERON:0005631,1.24e-10,14;UBERON:0000158,1.24e-10,14;UBERON:0003688,5.32e-09,6;UBERON:0002358,5.32e-09,6;UBERON:0003684,5.32e-09,6;UBERON:0001178,5.32e-09,6;UBERON:0001013,1.69e-08,14;UBERON:0004871,5.79e-08,8;UBERON:0003422,1.81e-07,6;UBERON:0004923,2.38e-07,66;UBERON:0000305,3.96e-07,7 | |||
|phase1_expression=2.54349730978779,4.71021152560163,2.11431606143957,4.00293193412522,4.02264984984559,8.72338524100369,7.59899634504932,0,0,0,0.697801167972428,2.83973783769224,3.69273769519835,0.37129905888014,0.662794751455832,1.34465029290355,0.602694528023977,0,0,0.246242116153576,2.65200898617529,1.88072832886853,0.286235987131057,0.410623275218653,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.767175371061182,1.0843174571537,0.50133791063589,3.62116297402059,0.795285947051099,10.705967146658,0.378139268656271,1.77383517970051,1.49319135678314,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0.347140501607594,0.56530794192401,1.25849830862972,1.6507082516404,0.626984899610432,0,0,0,0,0,0.24406205754817,0,2.43042584364528,0.0892997282840798,0,0.112611480483322,0,0,0.549605231791222,0,0,0,6.46063537203914,2.40597972162702,0.926864265692532,11.7603014507014,1.41867352879343,2.24271040056923,0,6.66002380726332,1.24484414159907,2.55950276932407,0.490385709340376,1.81628913173918,2.88087962239999,0.234321431833797,0,0,0.448346041655403,0.23486899728753,0,0.280901613404497,0.204154171254893,0.245668634623536,0.309977343527296,0,2.47266929278557,1.82032272387605,2.87447256726495,0,0.500474079487857,0,0.877955241761676,2.45190236639216,2.10333282469236,0.794025282120147,2.87023417102179,1.2813443329114,1.69545520927649,3.30100205692843,1.8549455262919,4.63752972082133,1.48893485065272,2.36286865137773,2.92311015483596,5.3011092591264,1.56484827691909,3.23292113637624,4.9701342952326,0.806016785821122,0.67824236924195,0,0,0,0.121973706129595,0,0.580969714347592,0.10366105501537,0,0,0,1.92972281457866,2.76269842704961,0.928735856063958,0,0.709840800239063,0.168584690078102,0,1.10293972732394,0.653638332277218,0.237270619111097,0.269662616320329,0,0.769494313892781,0.738155454624648,0,2.4694440679884,1.47008711385542,0,0,0,0,0,0.343135620597051,0.109750285408626,0,0,0,0,0,2.88662684050547,0,1.52631302506568,0,0,0.190254152234598,0,0,0,0,0,0,0.503946384596579,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.448524337381443,1.30788020649984,0.07333828582095,2.19761916788222,3.57656445851882,2.535908257668,0.531876233169741,1.04007436911366,0,0,0.799266537048298,2.57360388584666,18.4491345833091,1.64648067356154,0.325736184293735,1.42156779497018,3.95975936466715,0.602878754119172,0,0.699810938274399,0,0,0,1.19812427745791,1.14861935834114,0,0.723906533337896,1.43833425785268,0.716243852959582,0,0,0,0,0,0,0,0,0,0,0,0,0.736148950314839,0.500170521059677,0.271265023699736,6.03115498439341,14.0958901149758,5.04647728108591,2.34282829985426,0.601892199455438,2.27407504055985,2.0694614258501,0,2.02806085395873,0.60818530127658,0.783204629850962,3.77457766191941,0,0,0,0.909382714338778,3.32870879020994,10.5836602665388,2.72918588600655,3.83654933220156,11.507063871756,2.43464383585832,3.58195074346692,6.11244900345709,5.93672265779964,1.69630663182921,3.01854933032316,0.246381468041427,2.59627214591811,1.39452454151951,0,0.200506470303285,0,1.26295892981067,0.728364672026868,1.31124414959424,0,0.0770153371044148,0,0,0.105551628892876,0,0.170093705276516,0.647747748306418,0,0,0,0,0,0,0,0,0,0,0,0,1.64825036673018,0.330037999682352,0.574265537996172,0,1.6068392984416,0.096670718292122,0.154048617114644,0.460511024178389,0.275673144969061,0.859361958946189,1.74020032697074,0.340906509664404,1.51354460599453,0,0,0.255225424989168,0.10115778085555,1.39453664789186,5.66662224295152,0,0.308033580176089,0,0,0,0.572499546967965,0.744316738719335,0.949138274156178,0.953150969619124,0.767693373934002,0,0.318203247925937,0.78494864019923,0.539617372749944,3.84351841630477,2.12062324222236,0.202182481573316,0,0,0.48763373908959,0.974853958525138,0,0.9554993798559,2.96951407102797,3.39024349860728,0.551365343546124,3.3171948762061,0,0,0,0.202910376962704,0.92947049429925,1.40847801266121,0.286822704408103,1.96498082026242,0,0,1.05553817648832,1.97576935775941,0.379473173765715,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0.284136146806413,3.10367830158997,4.15750553165694,3.99308912729002,0,0,0.111308705022906,0,0.211125408127993,0.996239941255349,0,0,0.511343412510774,0,2.79935628895627,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0,0.173624994933292,0,0,0,0,0.295547618953547,0,0.10893846351899,0,0.615602068030377,0.683652335082007,0,0,0,3.19001159731919,1.09917112082235,5.33034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,1.22206028986725,0,0,0,0,0.802577647298789,0,0,0,0,0,2.41981432097328,0,0.568679216656392,0,0,0,0,0,0,0,0,0,0,0,0.698906672968121,0.171986032471617,0.580537987734511,0,0.164230914106418,0,0,0.90392296312213,0,0.19871461170299,0,0,0,0.213452994739353,3.19695375331408,0,0,0,0,0,0,0.67952103036807,0.732219924186332,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| ||
|short_description=p8@COL5A1 | |||
}} | }} |
Latest revision as of 08:59, 16 September 2015
Short description: | p8@COL5A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_COL5A1_5end |
Coexpression cluster: | C396_Mesenchymal_Chondrocyte_Smooth_Preadipocyte_Placental_Fibroblast_Hepatic |
Association with transcript: | 35bp_to_AB209864_5end |
EntrezGene: | COL5A1 |
HGNC: | 2209 |
UniProt: | Q59EE7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.89e-23 | 76 |
extraembryonic cell | 1.64e-17 | 19 |
mesenchymal cell | 6.62e-14 | 354 |
connective tissue cell | 9.64e-14 | 361 |
multi fate stem cell | 2.68e-13 | 427 |
preadipocyte | 4.08e-13 | 12 |
somatic stem cell | 1.06e-12 | 433 |
stem cell | 6.20e-12 | 441 |
motile cell | 6.76e-12 | 386 |
mesenchymal stem cell of umbilical cord | 1.81e-07 | 6 |
mesenchymal stem cell of adipose | 1.99e-07 | 8 |
skin fibroblast | 3.04e-07 | 23 |
stromal cell | 4.83e-07 | 28 |
Ontology term | p-value | n |
---|---|---|
extraembryonic structure | 1.71e-14 | 24 |
connective tissue | 2.77e-14 | 371 |
extraembryonic membrane | 1.24e-10 | 14 |
membranous layer | 1.24e-10 | 14 |
omentum | 5.32e-09 | 6 |
peritoneum | 5.32e-09 | 6 |
abdominal cavity | 5.32e-09 | 6 |
visceral peritoneum | 5.32e-09 | 6 |
adipose tissue | 1.69e-08 | 14 |
somatic layer of lateral plate mesoderm | 5.79e-08 | 8 |
mesenchyme of umbilical cord | 1.81e-07 | 6 |
organ component layer | 2.38e-07 | 66 |
amnion | 3.96e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 6.27e-07 | 14 |