FFCP PHASE1:Hg19::chr9:37034469..37034474,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr9:37034469..37034474,-
|short_description=p1@PAX5
|description=CAGE_peak_1_at_PAX5_5end
|association_with_transcript=1bp_to_ENST00000377849,NM_016734,uc003zz...") |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5079 | |EntrezGene=5079 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8619 | |HGNC=8619 | ||
|TSSclassifier=strong | |||
|UniProt=E3W992,Q02548,Q5SFM2,Q6S731,Q6S730,Q6S729,Q6S728 | |UniProt=E3W992,Q02548,Q5SFM2,Q6S731,Q6S730,Q6S729,Q6S728 | ||
|association_with_transcript=1bp_to_ENST00000377849,NM_016734,uc003zzo.1,uc010mlo.1,uc010mlp.1,uc010mlq.1,uc010mlr.1,uc010mls.1,uc011lpw.1,uc011lpx.1,uc011lpy.1,uc011lpz.1,uc011lqa.1,uc011lqb.1,uc011lqc.1_5end | |||
|cluster_id=chr9:37034469..37034474,- | |||
|coexpression_cluster_id=C442 | |||
|description=CAGE_peak_1_at_PAX5_5end | |||
|id=chr9:37034469..37034474,- | |||
|ontology_enrichment_celltype=CL:0000945!5.28e-44!24;CL:0000826!5.28e-44!24;CL:0000236!3.71e-28!14;CL:0000542!4.53e-19!53;CL:0000051!4.53e-19!53;CL:0000838!8.84e-18!52;CL:0002087!2.22e-10!119;CL:0000037!6.23e-09!172;CL:0000566!6.23e-09!172;CL:0000738!8.79e-09!140;CL:0000988!7.04e-08!182;CL:0000817!1.37e-07!3;CL:0002031!2.28e-07!124;CL:0002032!3.04e-07!165;CL:0000837!3.04e-07!165 | |||
|ontology_enrichment_celltype_v019=CL:0000945;2.77e-85;24!CL:0000236;7.57e-50;13!CL:0000542;1.98e-24;53!CL:0000123;1.41e-08;2!CL:0000242;1.41e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,1.89e-85,24;CL:0000826,1.89e-85,24;CL:0000236,1.02e-53,14;CL:0000542,8.00e-39,53;CL:0000051,8.00e-39,53;CL:0000838,3.34e-36,52;CL:0002087,7.80e-16,115;CL:0000817,2.42e-13,3;CL:0000738,1.80e-12,136;CL:0002031,2.98e-12,120;CL:0000037,7.05e-11,168;CL:0002032,1.36e-10,161;CL:0000837,1.36e-10,161;CL:0000988,5.23e-10,177;CL:0000785,2.31e-09,2;CL:0000955,2.31e-09,2;CL:0000818,2.31e-09,2;CL:0000954,2.31e-09,2;CL:0000816,2.31e-09,2;CL:0000242,1.19e-08,2 | |||
|ontology_enrichment_development_v019=CL:0000051;1.98e-24;53!CL:0000954;2.18e-09;2!UBERON:0004872;8.63e-09;7 | |||
|ontology_enrichment_disease=DOID:0060058!3.61e-10!10 | |||
|ontology_enrichment_disease_v019=DOID:0060058;8.95e-15;10 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,8.85e-15,10 | |||
|ontology_enrichment_uberon=UBERON:0000178!2.96e-16!15;UBERON:0000179!2.96e-16!15;UBERON:0000463!2.96e-16!15;UBERON:0002106!7.12e-07!3;UBERON:0004854!7.12e-07!3;UBERON:0009034!7.12e-07!3;UBERON:0002095!7.12e-07!3;UBERON:0004782!7.12e-07!3;UBERON:0003281!7.12e-07!3;UBERON:0009664!7.12e-07!3;UBERON:0002296!7.12e-07!3;UBERON:0005602!7.12e-07!3;UBERON:0001179!7.12e-07!3;UBERON:0006293!7.12e-07!3;UBERON:0004177!9.67e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0002106;4.92e-12;3!UBERON:0000178;2.82e-11;15!UBERON:0000179;2.82e-11;15!UBERON:0000463;2.82e-11;15!UBERON:0002390;3.02e-11;32!UBERON:0002193;2.78e-08;42!UBERON:0004177;2.13e-07;5!UBERON:0005057;2.13e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,5.97e-12,3;UBERON:0004854,5.97e-12,3;UBERON:0009034,5.97e-12,3;UBERON:0002095,5.97e-12,3;UBERON:0004782,5.97e-12,3;UBERON:0003281,5.97e-12,3;UBERON:0009664,5.97e-12,3;UBERON:0002296,5.97e-12,3;UBERON:0005602,5.97e-12,3;UBERON:0001179,5.97e-12,3;UBERON:0006293,5.97e-12,3;UBERON:0000178,2.80e-11,15;UBERON:0000179,2.80e-11,15;UBERON:0000463,2.80e-11,15;UBERON:0000945,1.32e-07,8;UBERON:0010039,1.32e-07,8 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.1033514369878,21.9208573831355,22.0390187678302,0,0,0.154816123316076,0,0,0,27.5008562060071,22.7470771979874,0,0,0,0,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622822248995575,0,0,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,3.51992488922645,5.46138611262132,5.33705552318133,4.69403244823158,3.2031678962881,3.4485146397269,1.98313461835459,5.72432252721218,23.3377317334874,17.0298784917572,22.1718472312633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132957960518865,0,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.790204397959275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6541442089831,0.215714200818617,0.640365346820666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0.507447609232169,0.764637207142375,0.569647187174163,2.85878130549347,1.23408681925858,1.29694662238543,1.62009431171434,3.17250070517708,0,0,0,10.9623873324174,23.3716125021841,0,0,0,0,1.69338866179106,0.324621940274555,0,0,0,0,0.50787533340481,0,0.403599414382095,0,0,0,0.223676107892416,0.333698283423817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.2616279454951,2.26739473068848,0,15.877939904478,0,0,0,0,0.0986434056369336,2.3948309234694,0,0,0,0,0.520855522170466,0,0,0,0,0,0,0,0.347249989866585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0,0,0,0,0,0,0,0,35.7611386862705,1.17398771359254,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193978032976839,0,0,0,0,0,1.56441106187842,0,0,0,1.00863292007874,0,7.03539491234055,0,0,0.235694034616795,0,0,0,0,0,0,1.27746588066972,0.429765441419957,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,20.4909463599198,0,0,0,0,0.415440338029185,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32506888912221,0.129282956361551,0.13223260174269,0,0,0,0,0,2.48083010905975,0,73.3191442252993,0.638341257770182,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0,0,0,0,0,1.87333962322753,4.34763085832475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.79994958341972,0.106691729694141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.80731275512408,0.80057074828547,0,0,0,0,0,0,0,0,0,0,0,0,0.183428598521679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.18552944001007,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40363678077263,0.596852325484105,0,0,0,7.09525364763366,0.0771741581079447,0,2.82190377816914,0,0.471353094203252,0,0,0,0,1.2217909337381,2.70723129489024,4.4973520166218,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126166424835079,0,0.126698501011437,0.407955318967927,0.26721740526556,0.275684698604535,0,0.0757786982182394,0,0,0,0,0,0.581300188524055,0.124149428591716,0,0,0.202117188958219,0,0,4.64729165800654,0.215166616178029,0,0.244209805832924,0,0,0,0,0.122241444182866,0,0,1.61019034872821,15.3872876305552 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.1033514369878,21.9208573831355,22.0390187678302,0,0,0.154816123316076,0,0,0,27.5008562060071,22.7470771979874,0,0,0,0,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622822248995575,0,0,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,3.51992488922645,5.46138611262132,5.33705552318133,4.69403244823158,3.2031678962881,3.4485146397269,1.98313461835459,5.72432252721218,23.3377317334874,17.0298784917572,22.1718472312633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132957960518865,0,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.790204397959275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6541442089831,0.215714200818617,0.640365346820666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0.507447609232169,0.764637207142375,0.569647187174163,2.85878130549347,1.23408681925858,1.29694662238543,1.62009431171434,3.17250070517708,0,0,0,10.9623873324174,23.3716125021841,0,0,0,0,1.69338866179106,0.324621940274555,0,0,0,0,0.50787533340481,0,0.403599414382095,0,0,0,0.223676107892416,0.333698283423817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.2616279454951,2.26739473068848,0,15.877939904478,0,0,0,0,0.0986434056369336,2.3948309234694,0,0,0,0,0.520855522170466,0,0,0,0,0,0,0,0.347249989866585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0,0,0,0,0,0,0,0,35.7611386862705,1.17398771359254,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193978032976839,0,0,0,0,0,1.56441106187842,0,0,0,1.00863292007874,0,7.03539491234055,0,0,0.235694034616795,0,0,0,0,0,0,1.27746588066972,0.429765441419957,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,20.4909463599198,0,0,0,0,0.415440338029185,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32506888912221,0.129282956361551,0.13223260174269,0,0,0,0,0,2.48083010905975,0,73.3191442252993,0.638341257770182,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0,0,0,0,0,1.87333962322753,4.34763085832475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.79994958341972,0.106691729694141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.80731275512408,0.80057074828547,0,0,0,0,0,0,0,0,0,0,0,0,0.183428598521679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.18552944001007,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40363678077263,0.596852325484105,0,0,0,7.09525364763366,0.0771741581079447,0,2.82190377816914,0,0.471353094203252,0,0,0,0,1.2217909337381,2.70723129489024,4.4973520166218,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126166424835079,0,0.126698501011437,0.407955318967927,0.26721740526556,0.275684698604535,0,0.0757786982182394,0,0,0,0,0,0.581300188524055,0.124149428591716,0,0,0.202117188958219,0,0,4.64729165800654,0.215166616178029,0,0.244209805832924,0,0,0,0,0.122241444182866,0,0,1.61019034872821,15.3872876305552 | ||
|short_description=p1@PAX5 | |||
}} | }} |
Latest revision as of 10:21, 17 September 2015
Short description: | p1@PAX5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PAX5_5end |
Coexpression cluster: | C442_diffuse_xeroderma_lymphoma_Burkitt_plasma_b_lymphangiectasia |
Association with transcript: | 1bp_to_ENST00000377849, NM_016734, uc003zzo.1, uc010mlo.1, uc010mlp.1, uc010mlq.1, uc010mlr.1, uc010mls.1, uc011lpw.1, uc011lpx.1, uc011lpy.1, uc011lpz.1, uc011lqa.1, uc011lqb.1, uc011lqc.1_5end |
EntrezGene: | PAX5 |
HGNC: | 8619 |
UniProt: | E3W992Q02548Q5SFM2Q6S731Q6S730Q6S729Q6S728 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 1.89e-85 | 24 |
pro-B cell | 1.89e-85 | 24 |
B cell | 1.02e-53 | 14 |
lymphocyte | 8.00e-39 | 53 |
common lymphoid progenitor | 8.00e-39 | 53 |
lymphoid lineage restricted progenitor cell | 3.34e-36 | 52 |
nongranular leukocyte | 7.80e-16 | 115 |
precursor B cell | 2.42e-13 | 3 |
leukocyte | 1.80e-12 | 136 |
hematopoietic lineage restricted progenitor cell | 2.98e-12 | 120 |
hematopoietic stem cell | 7.05e-11 | 168 |
hematopoietic oligopotent progenitor cell | 1.36e-10 | 161 |
hematopoietic multipotent progenitor cell | 1.36e-10 | 161 |
hematopoietic cell | 5.23e-10 | 177 |
mature B cell | 2.31e-09 | 2 |
pre-B-II cell | 2.31e-09 | 2 |
transitional stage B cell | 2.31e-09 | 2 |
small pre-B-II cell | 2.31e-09 | 2 |
immature B cell | 2.31e-09 | 2 |
Merkel cell | 1.19e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
spleen | 5.97e-12 | 3 |
gastrointestinal system mesentery | 5.97e-12 | 3 |
stomach region | 5.97e-12 | 3 |
mesentery | 5.97e-12 | 3 |
gastrointestinal system serosa | 5.97e-12 | 3 |
mesentery of stomach | 5.97e-12 | 3 |
gut mesentery | 5.97e-12 | 3 |
dorsal mesentery | 5.97e-12 | 3 |
dorsal mesogastrium | 5.97e-12 | 3 |
peritoneal cavity | 5.97e-12 | 3 |
spleen primordium | 5.97e-12 | 3 |
blood | 2.80e-11 | 15 |
haemolymphatic fluid | 2.80e-11 | 15 |
organism substance | 2.80e-11 | 15 |
stomach | 1.32e-07 | 8 |
food storage organ | 1.32e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 8.85e-15 | 10 |