FFCP PHASE1:Hg19::chr9:136242894..136242905,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6836 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11476 | |||
|TSSclassifier=strong | |||
|UniProt=Q5T8U5 | |||
|association_with_transcript=8bp_to_ENST00000371991_5end | |||
|cluster_id=chr9:136242894..136242905,- | |||
|coexpression_cluster_id=C562 | |||
|description=CAGE_peak_4_at_SURF4_5end | |||
|id=chr9:136242894..136242905,- | |||
|ontology_enrichment_celltype=CL:0000144!1.09e-36!625;CL:0002371!5.15e-36!591;CL:0000012!2.81e-35!682;CL:0000548!5.75e-35!679;CL:0000004!5.75e-35!679;CL:0000255!5.75e-35!679;CL:0000003!7.45e-23!722;CL:0000055!9.41e-23!180;CL:0000222!3.29e-20!119;CL:0000220!2.07e-18!246;CL:0002321!4.64e-18!248;CL:0000183!8.02e-17!59;CL:0000048!1.07e-16!430;CL:0000723!2.43e-16!436;CL:0000680!4.75e-16!57;CL:0000056!4.75e-16!57;CL:0000355!4.75e-16!57;CL:0000034!7.03e-16!444;CL:0000187!3.15e-15!54;CL:0000192!5.49e-15!42;CL:0000514!5.49e-15!42;CL:0000359!5.34e-14!32;CL:0000063!9.04e-14!578;CL:0000393!2.14e-11!60;CL:0000211!2.14e-11!60;CL:0000057!7.35e-11!75;CL:0002320!7.22e-07!365 | |||
|ontology_enrichment_celltype_v019=CL:0000359;5.26e-13;32!CL:0000192;3.52e-10;43!CL:0000187;4.26e-08;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,6.31e-20,121;CL:0002321,6.12e-18,250;CL:0000048,2.11e-16,427;CL:0000723,5.09e-16,433;CL:0000034,1.47e-15,441;CL:0000680,1.86e-15,58;CL:0000056,1.86e-15,58;CL:0000355,1.86e-15,58;CL:0000187,1.23e-14,55;CL:0000192,2.72e-14,43;CL:0000514,2.72e-14,43;CL:0000359,5.29e-14,32;CL:0000057,4.31e-11,76;CL:0000393,5.91e-11,61;CL:0000211,5.91e-11,61;CL:0002320,8.42e-07,361 | |||
|ontology_enrichment_development_v019=CL:0000514;3.52e-10;43!CL:0000355;1.72e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003914!9.31e-21!118;UBERON:0002049!1.80e-18!79;UBERON:0007798!1.80e-18!79;UBERON:0000490!1.84e-17!138;UBERON:0005256!9.75e-17!143;UBERON:0001637!1.34e-16!42;UBERON:0003509!1.34e-16!42;UBERON:0004572!1.34e-16!42;UBERON:0000055!1.71e-16!69;UBERON:0004535!4.45e-16!110;UBERON:0000486!1.44e-15!82;UBERON:0001981!4.39e-15!60;UBERON:0007500!4.39e-15!60;UBERON:0004537!4.39e-15!60;UBERON:0006965!4.39e-15!60;UBERON:0000914!9.79e-15!83;UBERON:0002329!9.79e-15!83;UBERON:0003077!9.79e-15!83;UBERON:0003059!9.79e-15!83;UBERON:0007282!9.79e-15!83;UBERON:0009618!9.79e-15!83;UBERON:0007285!9.79e-15!83;UBERON:0004290!1.08e-14!70;UBERON:0001009!1.12e-14!113;UBERON:0004872!1.19e-14!84;UBERON:0002100!6.37e-13!216;UBERON:0001134!7.78e-13!61;UBERON:0002036!7.78e-13!61;UBERON:0003082!7.78e-13!61;UBERON:0002385!2.65e-12!63;UBERON:0001015!2.65e-12!63;UBERON:0000383!2.65e-12!63;UBERON:0004573!5.41e-12!33;UBERON:0004571!5.41e-12!33;UBERON:0000926!4.00e-09!448;UBERON:0004120!4.00e-09!448;UBERON:0006603!4.00e-09!448;UBERON:0003104!4.57e-09!238;UBERON:0009142!4.57e-09!238 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;1.74e-12;42!UBERON:0003509;1.74e-12;42!UBERON:0004572;1.74e-12;42!UBERON:0004573;6.65e-11;33!UBERON:0004571;6.65e-11;33!UBERON:0007500;1.13e-09;56!UBERON:0001981;1.13e-09;56!UBERON:0004537;1.13e-09;56!UBERON:0000055;3.38e-09;65!UBERON:0003914;1.42e-08;74!UBERON:0002049;3.16e-08;75!UBERON:0007798;3.16e-08;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003914,3.23e-21,117;UBERON:0000490,4.21e-19,148;UBERON:0002049,2.92e-18,78;UBERON:0007798,2.92e-18,78;UBERON:0007503,1.14e-16,78;UBERON:0001637,1.33e-16,42;UBERON:0003509,1.33e-16,42;UBERON:0004572,1.33e-16,42;UBERON:0000055,2.75e-16,68;UBERON:0004535,7.55e-16,109;UBERON:0005256,2.19e-15,122;UBERON:0000486,3.77e-15,83;UBERON:0007500,6.98e-15,59;UBERON:0001981,6.98e-15,59;UBERON:0004537,6.98e-15,59;UBERON:0006965,6.98e-15,59;UBERON:0001009,1.87e-14,112;UBERON:0004872,1.91e-14,83;UBERON:0002329,3.01e-14,71;UBERON:0003059,3.01e-14,71;UBERON:0007282,3.01e-14,71;UBERON:0004290,3.01e-14,71;UBERON:0009618,3.01e-14,71;UBERON:0007524,1.35e-13,73;UBERON:0003077,1.40e-13,72;UBERON:0007285,1.40e-13,72;UBERON:0002100,5.52e-13,199;UBERON:0003104,8.49e-13,160;UBERON:0009142,8.49e-13,160;UBERON:0001134,2.16e-12,62;UBERON:0002036,2.16e-12,62;UBERON:0003082,2.16e-12,62;UBERON:0004573,5.37e-12,33;UBERON:0004571,5.37e-12,33;UBERON:0002385,7.28e-12,64;UBERON:0001015,7.28e-12,64;UBERON:0000383,7.28e-12,64;UBERON:0000926,1.32e-07,315;UBERON:0004120,1.32e-07,315;UBERON:0006603,1.32e-07,315 | |||
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| |||
|short_description=p4@SURF4 | |||
}} |
Latest revision as of 06:58, 16 September 2015
Short description: | p4@SURF4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SURF4_5end |
Coexpression cluster: | C562_Smooth_Fibroblast_Preadipocyte_Hepatic_Alveolar_Adipocyte_Mesenchymal |
Association with transcript: | 8bp_to_ENST00000371991_5end |
EntrezGene: | SURF4 |
HGNC: | 11476 |
UniProt: | Q5T8U5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 6.31e-20 | 121 |
embryonic cell | 6.12e-18 | 250 |
multi fate stem cell | 2.11e-16 | 427 |
somatic stem cell | 5.09e-16 | 433 |
stem cell | 1.47e-15 | 441 |
muscle precursor cell | 1.86e-15 | 58 |
myoblast | 1.86e-15 | 58 |
multi-potent skeletal muscle stem cell | 1.86e-15 | 58 |
muscle cell | 1.23e-14 | 55 |
smooth muscle cell | 2.72e-14 | 43 |
smooth muscle myoblast | 2.72e-14 | 43 |
vascular associated smooth muscle cell | 5.29e-14 | 32 |
fibroblast | 4.31e-11 | 76 |
electrically responsive cell | 5.91e-11 | 61 |
electrically active cell | 5.91e-11 | 61 |
connective tissue cell | 8.42e-07 | 361 |