FF:12182-129A4: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=RNA-Seq@SAMD00013682 | |DRA_sample_Accession=RNA-Seq@SAMD00013682 | ||
|accession_numbers=CAGE;DRX008534;DRR009406;DRZ000831;DRZ002216!RNA-Seq;DRX012356;DRR013804;DRZ003005; | |accession_numbers=CAGE;DRX008534;DRR009406;DRZ000831;DRZ002216;DRZ012181;DRZ013566!RNA-Seq;DRX012356;DRR013804;DRZ003005; | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000178,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000179,UBERON:0000463,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0002390,UBERON:0004535,UBERON:0002193,UBERON:0001009 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000178,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000179,UBERON:0000463,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0002390,UBERON:0004535,UBERON:0002193,UBERON:0001009 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase= | |data_phase=2 | ||
|datafreeze_phase= | |datafreeze_phase=2 | ||
|def= | |def= | ||
|expression_enrichment_score=chr11:47400078..47400106,-!p1@SPI1!2.82!658.85!SPI1;;chr12:54694653..54694672,-!p2@NFE2!2.76!568.06!NFE2;;chr2:68592406..68592424,+!p1@PLEK!2.65!450.04!PLEK;;chr12:54694758..54694805,-!p1@NFE2!2.41!304.78!NFE2;;chrX:131622958..131622978,-!p3@MBNL3!2.37!292.46!MBNL3;;chrX:131623026..131623039,-!p5@MBNL3!2.36!226.97!MBNL3;;chrX:131623044..131623089,-!p1@MBNL3!2.34!846.26!MBNL3;;chrX:131622988..131623006,-!p8@MBNL3!2.25!178.33!MBNL3;;chr10:51572339..51572376,+!p4@NCOA4!2.22!355.36!NCOA4;;chr12:54694807..54694832,-!p3@NFE2!2.16!142.66!NFE2;;chrX:70315688..70315709,+!p1@FOXO4!2.14!305.43!FOXO4;;chr10:51572408..51572454,+!p3@NCOA4!2.11!701.65!NCOA4;;chr19:13213511..13213545,-!p2@LYL1!2.07!125.16!LYL1;;chr2:70142232..70142251,+!p1@MXD1!2.04!582.33!MXD1;;chr7:28220506..28220552,-!p3@JAZF1!2.02!103.11!JAZF1;;chr7:28220354..28220441,-!p1@JAZF1!1.93!1223.67!JAZF1;;chr3:128212033..128212051,-!p1@GATA2!1.84!68.09!GATA2;;chr19:12998003..12998021,-!p1@KLF1!1.84!67.44!KLF1;;chr10:51585430..51585448,+!p7@NCOA4!1.81!63.55!NCOA4;;chr10:51585449..51585487,+!p6@NCOA4!1.79!60.96!NCOA4;;chr16:85932760..85932775,+!p1@IRF8!1.76!56.42!IRF8;;chr1:43148855..43148908,+!p4@YBX1!1.72!80.41!YBX1;;chr2:148778973..148779035,+!p3@MBD5!1.71!127.10!MBD5;;chr4:109087445..109087463,-!p1@LEF1!1.71!49.93!LEF1;;chr7:50344289..50344323,+!p1@IKZF1!1.69!47.99!IKZF1;;chr3:141748010..141748030,-!p8@TFDP2!1.67!45.39!TFDP2;;chr11:47400062..47400077,-!p2@SPI1!1.67!45.39!SPI1;;chr1:47697965..47697991,-!p7@TAL1!1.66!44.74!TAL1;;chr20:56195474..56195506,-!p1@ZBP1!1.66!44.74!ZBP1;;chr17:45810594..45810608,+!p1@TBX21!1.66!44.74!TBX21;;chr10:111985713..111985774,+!p2@MXI1!1.65!392.97!MXI1;;chr12:54778471..54778528,-!p1@ZNF385A!1.65!44.10!ZNF385A;;chr11:47400045..47400060,-!p6@SPI1!1.63!42.15!SPI1;;chr7:50343634..50343717,+!p2@IKZF1!1.63!42.15!IKZF1;;chr3:27763807..27763822,-!p1@EOMES!1.62!40.85!EOMES;;chr3:187463179..187463201,-!p2@BCL6!1.61!156.28!BCL6;;chr5:176735063..176735088,-!p2@MXD3!1.61!39.56!MXD3;;chr11:47399947..47399961,-!p3@SPI1!1.61!39.56!SPI1;;chr11:47399996..47400014,-!p4@SPI1!1.57!36.31!SPI1;;chr7:28725715..28725727,+!p3@CREB5!1.56!41.50!CREB5;;chr11:47400032..47400043,-!p5@SPI1!1.56!35.02!SPI1;;chr1:23857325..23857416,-!p2@E2F2!1.55!40.21!E2F2;;chr2:231090433..231090469,+!p1@SP140!1.55!34.37!SP140;;chr10:111967345..111967422,+!p1@MXI1!1.52!501.27!MXI1;;chr5:133451294..133451310,+!p2@TCF7!1.52!32.42!TCF7;;chr7:28725740..28725778,+!p1@CREB5!1.50!264.58!CREB5;;chr19:16435625..16435682,+!p1@KLF2!1.49!904.62!KLF2;;chr21:34442439..34442455,+!p1@OLIG1!1.49!29.83!OLIG1;;chr12:54694738..54694749,-!p5@NFE2!1.46!27.88!NFE2;;chr6:391743..391759,+!p1@IRF4!1.46!27.88!IRF4;;chr9:117150254..117150271,-!p1@AKNA!1.45!72.63!AKNA;;chr19:13213662..13213686,-!p1@LYL1!1.45!39.56!LYL1;;chr2:68592394..68592405,+!p2@PLEK!1.44!26.59!PLEK;;chr2:28618532..28618610,+!p4@FOSL2!1.43!44.10!FOSL2;;chrX:48644984..48645005,+!p1@GATA1!1.42!25.29!GATA1;;chr1:8484007..8484061,-!p13@RERE!1.41!31.13!RERE;;chr6:144385698..144385742,-!p2@PLAGL1!1.41!29.83!PLAGL1;;chr2:231090471..231090504,+!p2@SP140!1.41!24.64!SP140;;chr2:100759010..100759035,-!p1@AFF3!1.40!23.99!AFF3;;chr4:185395633..185395651,-!p2@IRF2!1.39!37.61!IRF2;;chr2:192015701..192015743,-!p1@STAT4!1.39!32.42!STAT4;;chr19:13213555..13213568,-!p5@LYL1!1.39!23.35!LYL1;;chr11:111249993..111250006,-!p1@POU2AF1!1.36!22.05!POU2AF1;;chr12:54691711..54691725,-!p7@NFE2!1.35!21.40!NFE2;;chr2:192015750..192015793,-!p2@STAT4!1.34!27.88!STAT4;;chr19:13213634..13213645,-!p8@LYL1!1.34!20.75!LYL1;;chr2:208031943..208031978,-!p5@KLF7!1.33!27.24!KLF7;;chr5:133450365..133450444,+!p1@TCF7!1.32!89.49!TCF7;;chr10:51565239..51565263,+!p2@NCOA4!1.31!442.26!NCOA4;;chr3:63953435..63953499,+!p1@ATXN7!1.31!19.45!ATXN7;;chr12:53835425..53835437,+!p4@PRR13,p5@PCBP2!1.30!30.48!PCBP2;;chr12:10854646..10854658,-!p24@CSDA!1.30!18.81!CSDA;;chr11:128563948..128564003,+!p1@FLI1!1.28!210.75!FLI1;;chr1:25256756..25256774,-!p1@RUNX3!1.28!33.72!RUNX3;;chr12:54689552..54689574,-!p6@NFE2!1.28!18.16!NFE2;;chr5:142782823..142782854,-!p3@NR3C1!1.27!25.29!NR3C1;;chr17:38020392..38020477,-!p1@IKZF3!1.25!16.86!IKZF3;;chr5:131826457..131826514,-!p1@IRF1!1.24!632.91!IRF1;;chr9:32550965..32551031,-!p4@TOPORS!1.24!25.29!TOPORS;;chr17:38497662..38497713,+!p4@RARA!1.24!18.81!RARA;;chr17:17721569..17721574,-!p9@SREBF1!1.24!16.21!SREBF1;;chrX:107018836..107018862,-!p8@TSC22D3!1.24!16.21!TSC22D3;;chr1:23857128..23857141,-!p6@E2F2!1.24!16.21!E2F2;;chr16:88752889..88752921,-!p1@SNAI3!1.22!18.16!SNAI3;;chr19:50922187..50922204,+!p1@SPIB!1.22!15.56!SPIB;;chr9:137217986..137218049,+!p3@RXRA!1.20!42.15!RXRA;;chr16:3313791..3313834,+!p2@ZNF263!1.20!33.07!ZNF263;;chr9:135854091..135854159,+!p1@GFI1B!1.20!14.91!GFI1B;;chr3:18486354..18486377,-!p2@SATB1!1.19!18.16!SATB1;;chr10:31288398..31288455,-!p2@ZNF438!1.19!16.86!ZNF438;;chrX:106960285..106960299,-!p1@TSC22D3!1.18!374.82!TSC22D3;;chr5:88178983..88179012,-!p1@MEF2C!1.18!107.65!MEF2C;;chr2:70142189..70142223,+!p2@MXD1!1.18!99.22!MXD1;;chr12:54694686..54694697,-!p8@NFE2!1.18!14.27!NFE2;;chr1:23857698..23857733,-!p1@E2F2!1.17!25.29!E2F2;;chr13:41593425..41593480,-!p1@ELF1!1.16!84.30!ELF1;;chrX:106960180..106960197,-!p2@TSC22D3!1.16!51.23!TSC22D3;;chr4:185395191..185395226,-!p4@IRF2!1.16!18.81!IRF2;;chr10:8096631..8096660,+!p1@GATA3!1.16!16.21!GATA3;;chr2:231084659..231084721,-!p1@SP110!1.15!302.84!SP110;;chr7:149470641..149470694,-!p1@ZNF467!1.15!59.01!ZNF467;;chr7:50343895..50343936,+!p5@IKZF1!1.15!12.97!IKZF1;;chr1:47697881..47697910,-!p4@TAL1!1.15!12.97!TAL1;;chr17:37934365..37934387,-!p2@IKZF3!1.15!12.97!IKZF3;;chr9:117160738..117160782,-!p2@AKNA!1.14!52.53!AKNA;;chr6:108881012..108881034,+!p3@FOXO3!1.14!46.04!FOXO3;;chr17:38498402..38498445,+!p3@RARA!1.14!46.04!RARA;;chr19:56879534..56879615,+!p3@ZNF542!1.14!20.10!ZNF542;;chr2:208031542..208031595,-!p2@KLF7!1.13!87.54!KLF7;;chr1:43148792..43148849,+!p2@YBX1!1.12!46.69!YBX1;;chr19:45250948..45250998,+!p3@BCL3!1.12!31.13!BCL3;;chr3:71355163..71355209,-!p5@FOXP1!1.12!16.86!FOXP1;;chr12:54689532..54689551,-!p4@NFE2!1.12!12.32!NFE2;;chr7:64126535..64126559,+!p2@ZNF107!1.11!25.29!ZNF107;;chr20:50159198..50159299,-!p1@NFATC2!1.11!17.51!NFATC2;;chr17:38498594..38498661,+!p2@RARA!1.10!38.91!RARA;;chr6:106546808..106546833,+!p3@PRDM1!1.09!14.27!PRDM1;;chr2:70167296..70167306,+!p3@MXD1!1.06!16.21!MXD1;;chr1:47695003..47695042,-!p2@TAL1!1.06!10.38!TAL1;;chr14:75745523..75745537,+!p1@FOS!1.05!1235.99!FOS;;chr3:71632840..71632857,-!p10@FOXP1!1.03!19.45!FOXP1;;chr7:115670804..115670825,-!p1@TFEC!1.03!9.73!TFEC;;chr2:145277640..145277771,-!p1@ZEB2!1.02!127.75!ZEB2;;chr19:42636586..42636607,-!p1@POU2F2!1.02!26.59!POU2F2;;chr4:185395590..185395627,-!p3@IRF2!1.02!11.67!IRF2;;chr21:30671235..30671253,+!p1@BACH1!1.01!118.67!BACH1;;chr4:106068026..106068084,+!p1@TET2!1.01!85.60!TET2;;chr6:15246200..15246214,+!p2@JARID2!1.01!25.94!JARID2;;chr21:30671211..30671234,+!p3@BACH1!1.00!44.74!BACH1;;chr19:47616992..47617011,-!p4@ZC3H4!1.00!19.45!ZC3H4;;chr8:67525443..67525459,-!p2@MYBL1!1.00!13.62!MYBL1;;chr7:50344144..50344157,+!p6@IKZF1!1.00!9.08!IKZF1;;chr7:50344251..50344288,+!p3@IKZF1!1.00!9.08!IKZF1;;chr4:57522513..57522548,-!p4@HOPX!1.00!9.08!HOPX;;chr10:31288370..31288393,-!p3@ZNF438!1.00!9.08!ZNF438;;chr11:128392273..128392308,-!p2@ETS1!0.99!38.26!ETS1;;chr3:187463220..187463232,-!p3@BCL6!0.99!27.24!BCL6;;chr7:149470540..149470596,-!p2@ZNF467!0.99!11.67!ZNF467;;chr8:71316021..71316068,-!p1@NCOA2!0.98!82.36!NCOA2;;chr2:208394817..208394834,+!p3@CREB1!0.98!35.02!CREB1;;chrX:107018969..107019024,-!p6@TSC22D3!0.97!11.67!TSC22D3;;chr19:13213704..13213726,-!p3@LYL1!0.97!11.02!LYL1;;chrX:107019163..107019179,-!p7@TSC22D3!0.97!9.73!TSC22D3;;chr4:57522166..57522260,-!p2@HOPX!0.97!9.73!HOPX;;chr2:231090344..231090361,-!p3@SP110!0.97!8.43!SP110;;chr17:38020557..38020572,-!p4@IKZF3!0.97!8.43!IKZF3;;chr12:6782377..6782382,-!p15@ZNF384!0.97!8.43!ZNF384;;chr21:34442540..34442560,+!p2@OLIG1!0.97!8.43!OLIG1;;chr6:108882109..108882173,+!p2@FOXO3!0.96!44.74!FOXO3;;chr15:60884706..60884743,-!p1@RORA!0.96!42.80!RORA;;chr14:75988771..75988826,+!p1@BATF!0.96!11.02!BATF;;chr4:38665769..38665801,+!p2@KLF3!0.95!74.57!KLF3;;chr14:69262789..69262822,-!p2@ZFP36L1!0.95!21.40!ZFP36L1;;chr10:64576105..64576133,-!p1@EGR2!0.94!16.21!EGR2;;chr12:124812308..124812313,-!p57@NCOR2!0.94!7.78!NCOR2;;chr6:106546731..106546755,+!p5@PRDM1!0.94!7.78!PRDM1;;chr19:45251395..45251432,+!p8@BCL3!0.94!7.78!BCL3;;chr9:20382446..20382493,-!p4@MLLT3!0.94!7.78!MLLT3;;chr5:140080022..140080042,+!p1@ZMAT2!0.92!412.43!ZMAT2;;chr3:187463248..187463264,-!p1@BCL6!0.92!162.77!BCL6;;chr9:88969339..88969422,-!p2@ZCCHC6!0.92!59.66!ZCCHC6;;chr19:19779619..19779670,+!p1@ZNF101!0.92!21.40!ZNF101;;chr1:221052776..221052799,+!p1@HLX!0.92!13.62!HLX;;chr12:10854595..10854628,-!p7@CSDA!0.92!10.38!CSDA;;chr12:57505121..57505179,-!p1@STAT6!0.91!291.81!STAT6;;chr17:40440481..40440550,+!p1@STAT5A!0.91!53.17!STAT5A;;chr10:8096772..8096787,+!p2@GATA3!0.91!8.43!GATA3;;chr10:111985777..111985788,+!p4@MXI1!0.91!7.13!MXI1;;chr1:151030388..151030419,+!p9@MLLT11!0.91!7.13!MLLT11;;chr1:23857087..23857100,-!p8@E2F2!0.91!7.13!E2F2;;chr1:47691303..47691319,-!p5@TAL1!0.91!7.13!TAL1;;chr4:109089901..109089930,-!p3@LEF1!0.91!7.13!LEF1;;chr14:99738059..99738086,-!p2@BCL11B!0.91!7.13!BCL11B;;chr1:156470494..156470505,-!p3@MEF2D!0.90!10.38!MEF2D;;chr4:140098339..140098392,-!p1@ELF2!0.89!59.01!ELF2;;chr6:91006518..91006570,-!p1@BACH2!0.89!16.21!BACH2;;chr9:88969303..88969335,-!p1@ZCCHC6!0.88!64.20!ZCCHC6;;chr3:71632864..71632885,-!p4@FOXP1!0.88!23.35!FOXP1;;chr6:106534192..106534224,+!p1@PRDM1!0.88!19.45!PRDM1;;chr8:37963466..37963506,+!p3@ASH2L!0.88!8.43!ASH2L;;chr6:108880956..108881011,+!p1@FOXO3!0.87!44.74!FOXO3;;chr1:158979872..158979898,+!p3@IFI16!0.87!20.75!IFI16;;chr2:231084639..231084654,-!p2@SP110!0.87!11.02!SP110;;chr2:68615063..68615089,+!p4@PLEK!0.87!6.48!PLEK;;chr3:18480217..18480239,-!p3@SATB1!0.87!6.48!SATB1;;chr4:109090075..109090095,-!p2@LEF1!0.87!6.48!LEF1;;ch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| |expression_enrichment_score=chr11:47400078..47400106,-!p1@SPI1!2.82!658.85!SPI1;;chr12:54694653..54694672,-!p2@NFE2!2.76!568.06!NFE2;;chr2:68592406..68592424,+!p1@PLEK!2.65!450.04!PLEK;;chr12:54694758..54694805,-!p1@NFE2!2.41!304.78!NFE2;;chrX:131622958..131622978,-!p3@MBNL3!2.37!292.46!MBNL3;;chrX:131623026..131623039,-!p5@MBNL3!2.36!226.97!MBNL3;;chrX:131623044..131623089,-!p1@MBNL3!2.34!846.26!MBNL3;;chrX:131622988..131623006,-!p8@MBNL3!2.25!178.33!MBNL3;;chr10:51572339..51572376,+!p4@NCOA4!2.22!355.36!NCOA4;;chr12:54694807..54694832,-!p3@NFE2!2.16!142.66!NFE2;;chrX:70315688..70315709,+!p1@FOXO4!2.14!305.43!FOXO4;;chr10:51572408..51572454,+!p3@NCOA4!2.11!701.65!NCOA4;;chr19:13213511..13213545,-!p2@LYL1!2.07!125.16!LYL1;;chr2:70142232..70142251,+!p1@MXD1!2.04!582.33!MXD1;;chr7:28220506..28220552,-!p3@JAZF1!2.02!103.11!JAZF1;;chr7:28220354..28220441,-!p1@JAZF1!1.93!1223.67!JAZF1;;chr3:128212033..128212051,-!p1@GATA2!1.84!68.09!GATA2;;chr19:12998003..12998021,-!p1@KLF1!1.84!67.44!KLF1;;chr10:51585430..51585448,+!p7@NCOA4!1.81!63.55!NCOA4;;chr10:51585449..51585487,+!p6@NCOA4!1.79!60.96!NCOA4;;chr16:85932760..85932775,+!p1@IRF8!1.76!56.42!IRF8;;chr1:43148855..43148908,+!p4@YBX1!1.72!80.41!YBX1;;chr2:148778973..148779035,+!p3@MBD5!1.71!127.10!MBD5;;chr4:109087445..109087463,-!p1@LEF1!1.71!49.93!LEF1;;chr7:50344289..50344323,+!p1@IKZF1!1.69!47.99!IKZF1;;chr3:141748010..141748030,-!p8@TFDP2!1.67!45.39!TFDP2;;chr11:47400062..47400077,-!p2@SPI1!1.67!45.39!SPI1;;chr1:47697965..47697991,-!p7@TAL1!1.66!44.74!TAL1;;chr20:56195474..56195506,-!p1@ZBP1!1.66!44.74!ZBP1;;chr17:45810594..45810608,+!p1@TBX21!1.66!44.74!TBX21;;chr10:111985713..111985774,+!p2@MXI1!1.65!392.97!MXI1;;chr12:54778471..54778528,-!p1@ZNF385A!1.65!44.10!ZNF385A;;chr11:47400045..47400060,-!p6@SPI1!1.63!42.15!SPI1;;chr7:50343634..50343717,+!p2@IKZF1!1.63!42.15!IKZF1;;chr3:27763807..27763822,-!p1@EOMES!1.62!40.85!EOMES;;chr3:187463179..187463201,-!p2@BCL6!1.61!156.28!BCL6;;chr5:176735063..176735088,-!p2@MXD3!1.61!39.56!MXD3;;chr11:47399947..47399961,-!p3@SPI1!1.61!39.56!SPI1;;chr11:47399996..47400014,-!p4@SPI1!1.57!36.31!SPI1;;chr7:28725715..28725727,+!p3@CREB5!1.56!41.50!CREB5;;chr11:47400032..47400043,-!p5@SPI1!1.56!35.02!SPI1;;chr1:23857325..23857416,-!p2@E2F2!1.55!40.21!E2F2;;chr2:231090433..231090469,+!p1@SP140!1.55!34.37!SP140;;chr10:111967345..111967422,+!p1@MXI1!1.52!501.27!MXI1;;chr5:133451294..133451310,+!p2@TCF7!1.52!32.42!TCF7;;chr7:28725740..28725778,+!p1@CREB5!1.50!264.58!CREB5;;chr19:16435625..16435682,+!p1@KLF2!1.49!904.62!KLF2;;chr21:34442439..34442455,+!p1@OLIG1!1.49!29.83!OLIG1;;chr12:54694738..54694749,-!p5@NFE2!1.46!27.88!NFE2;;chr6:391743..391759,+!p1@IRF4!1.46!27.88!IRF4;;chr9:117150254..117150271,-!p1@AKNA!1.45!72.63!AKNA;;chr19:13213662..13213686,-!p1@LYL1!1.45!39.56!LYL1;;chr2:68592394..68592405,+!p2@PLEK!1.44!26.59!PLEK;;chr2:28618532..28618610,+!p4@FOSL2!1.43!44.10!FOSL2;;chrX:48644984..48645005,+!p1@GATA1!1.42!25.29!GATA1;;chr1:8484007..8484061,-!p13@RERE!1.41!31.13!RERE;;chr6:144385698..144385742,-!p2@PLAGL1!1.41!29.83!PLAGL1;;chr2:231090471..231090504,+!p2@SP140!1.41!24.64!SP140;;chr2:100759010..100759035,-!p1@AFF3!1.40!23.99!AFF3;;chr4:185395633..185395651,-!p2@IRF2!1.39!37.61!IRF2;;chr2:192015701..192015743,-!p1@STAT4!1.39!32.42!STAT4;;chr19:13213555..13213568,-!p5@LYL1!1.39!23.35!LYL1;;chr11:111249993..111250006,-!p1@POU2AF1!1.36!22.05!POU2AF1;;chr12:54691711..54691725,-!p7@NFE2!1.35!21.40!NFE2;;chr2:192015750..192015793,-!p2@STAT4!1.34!27.88!STAT4;;chr19:13213634..13213645,-!p8@LYL1!1.34!20.75!LYL1;;chr2:208031943..208031978,-!p5@KLF7!1.33!27.24!KLF7;;chr5:133450365..133450444,+!p1@TCF7!1.32!89.49!TCF7;;chr10:51565239..51565263,+!p2@NCOA4!1.31!442.26!NCOA4;;chr3:63953435..63953499,+!p1@ATXN7!1.31!19.45!ATXN7;;chr12:53835425..53835437,+!p4@PRR13,p5@PCBP2!1.30!30.48!PCBP2;;chr12:10854646..10854658,-!p24@CSDA!1.30!18.81!CSDA;;chr11:128563948..128564003,+!p1@FLI1!1.28!210.75!FLI1;;chr1:25256756..25256774,-!p1@RUNX3!1.28!33.72!RUNX3;;chr12:54689552..54689574,-!p6@NFE2!1.28!18.16!NFE2;;chr5:142782823..142782854,-!p3@NR3C1!1.27!25.29!NR3C1;;chr17:38020392..38020477,-!p1@IKZF3!1.25!16.86!IKZF3;;chr5:131826457..131826514,-!p1@IRF1!1.24!632.91!IRF1;;chr9:32550965..32551031,-!p4@TOPORS!1.24!25.29!TOPORS;;chr17:38497662..38497713,+!p4@RARA!1.24!18.81!RARA;;chr17:17721569..17721574,-!p9@SREBF1!1.24!16.21!SREBF1;;chrX:107018836..107018862,-!p8@TSC22D3!1.24!16.21!TSC22D3;;chr1:23857128..23857141,-!p6@E2F2!1.24!16.21!E2F2;;chr16:88752889..88752921,-!p1@SNAI3!1.22!18.16!SNAI3;;chr19:50922187..50922204,+!p1@SPIB!1.22!15.56!SPIB;;chr9:137217986..137218049,+!p3@RXRA!1.20!42.15!RXRA;;chr16:3313791..3313834,+!p2@ZNF263!1.20!33.07!ZNF263;;chr9:135854091..135854159,+!p1@GFI1B!1.20!14.91!GFI1B;;chr3:18486354..18486377,-!p2@SATB1!1.19!18.16!SATB1;;chr10:31288398..31288455,-!p2@ZNF438!1.19!16.86!ZNF438;;chrX:106960285..106960299,-!p1@TSC22D3!1.18!374.82!TSC22D3;;chr5:88178983..88179012,-!p1@MEF2C!1.18!107.65!MEF2C;;chr2:70142189..70142223,+!p2@MXD1!1.18!99.22!MXD1;;chr12:54694686..54694697,-!p8@NFE2!1.18!14.27!NFE2;;chr1:23857698..23857733,-!p1@E2F2!1.17!25.29!E2F2;;chr13:41593425..41593480,-!p1@ELF1!1.16!84.30!ELF1;;chrX:106960180..106960197,-!p2@TSC22D3!1.16!51.23!TSC22D3;;chr4:185395191..185395226,-!p4@IRF2!1.16!18.81!IRF2;;chr10:8096631..8096660,+!p1@GATA3!1.16!16.21!GATA3;;chr2:231084659..231084721,-!p1@SP110!1.15!302.84!SP110;;chr7:149470641..149470694,-!p1@ZNF467!1.15!59.01!ZNF467;;chr7:50343895..50343936,+!p5@IKZF1!1.15!12.97!IKZF1;;chr1:47697881..47697910,-!p4@TAL1!1.15!12.97!TAL1;;chr17:37934365..37934387,-!p2@IKZF3!1.15!12.97!IKZF3;;chr9:117160738..117160782,-!p2@AKNA!1.14!52.53!AKNA;;chr6:108881012..108881034,+!p3@FOXO3!1.14!46.04!FOXO3;;chr17:38498402..38498445,+!p3@RARA!1.14!46.04!RARA;;chr19:56879534..56879615,+!p3@ZNF542!1.14!20.10!ZNF542;;chr2:208031542..208031595,-!p2@KLF7!1.13!87.54!KLF7;;chr1:43148792..43148849,+!p2@YBX1!1.12!46.69!YBX1;;chr19:45250948..45250998,+!p3@BCL3!1.12!31.13!BCL3;;chr3:71355163..71355209,-!p5@FOXP1!1.12!16.86!FOXP1;;chr12:54689532..54689551,-!p4@NFE2!1.12!12.32!NFE2;;chr7:64126535..64126559,+!p2@ZNF107!1.11!25.29!ZNF107;;chr20:50159198..50159299,-!p1@NFATC2!1.11!17.51!NFATC2;;chr17:38498594..38498661,+!p2@RARA!1.10!38.91!RARA;;chr6:106546808..106546833,+!p3@PRDM1!1.09!14.27!PRDM1;;chr2:70167296..70167306,+!p3@MXD1!1.06!16.21!MXD1;;chr1:47695003..47695042,-!p2@TAL1!1.06!10.38!TAL1;;chr14:75745523..75745537,+!p1@FOS!1.05!1235.99!FOS;;chr3:71632840..71632857,-!p10@FOXP1!1.03!19.45!FOXP1;;chr7:115670804..115670825,-!p1@TFEC!1.03!9.73!TFEC;;chr2:145277640..145277771,-!p1@ZEB2!1.02!127.75!ZEB2;;chr19:42636586..42636607,-!p1@POU2F2!1.02!26.59!POU2F2;;chr4:185395590..185395627,-!p3@IRF2!1.02!11.67!IRF2;;chr21:30671235..30671253,+!p1@BACH1!1.01!118.67!BACH1;;chr4:106068026..106068084,+!p1@TET2!1.01!85.60!TET2;;chr6:15246200..15246214,+!p2@JARID2!1.01!25.94!JARID2;;chr21:30671211..30671234,+!p3@BACH1!1.00!44.74!BACH1;;chr19:47616992..47617011,-!p4@ZC3H4!1.00!19.45!ZC3H4;;chr8:67525443..67525459,-!p2@MYBL1!1.00!13.62!MYBL1;;chr7:50344144..50344157,+!p6@IKZF1!1.00!9.08!IKZF1;;chr7:50344251..50344288,+!p3@IKZF1!1.00!9.08!IKZF1;;chr4:57522513..57522548,-!p4@HOPX!1.00!9.08!HOPX;;chr10:31288370..31288393,-!p3@ZNF438!1.00!9.08!ZNF438;;chr11:128392273..128392308,-!p2@ETS1!0.99!38.26!ETS1;;chr3:187463220..187463232,-!p3@BCL6!0.99!27.24!BCL6;;chr7:149470540..149470596,-!p2@ZNF467!0.99!11.67!ZNF467;;chr8:71316021..71316068,-!p1@NCOA2!0.98!82.36!NCOA2;;chr2:208394817..208394834,+!p3@CREB1!0.98!35.02!CREB1;;chrX:107018969..107019024,-!p6@TSC22D3!0.97!11.67!TSC22D3;;chr19:13213704..13213726,-!p3@LYL1!0.97!11.02!LYL1;;chrX:107019163..107019179,-!p7@TSC22D3!0.97!9.73!TSC22D3;;chr4:57522166..57522260,-!p2@HOPX!0.97!9.73!HOPX;;chr2:231090344..231090361,-!p3@SP110!0.97!8.43!SP110;;chr17:38020557..38020572,-!p4@IKZF3!0.97!8.43!IKZF3;;chr12:6782377..6782382,-!p15@ZNF384!0.97!8.43!ZNF384;;chr21:34442540..34442560,+!p2@OLIG1!0.97!8.43!OLIG1;;chr6:108882109..108882173,+!p2@FOXO3!0.96!44.74!FOXO3;;chr15:60884706..60884743,-!p1@RORA!0.96!42.80!RORA;;chr14:75988771..75988826,+!p1@BATF!0.96!11.02!BATF;;chr4:38665769..38665801,+!p2@KLF3!0.95!74.57!KLF3;;chr14:69262789..69262822,-!p2@ZFP36L1!0.95!21.40!ZFP36L1;;chr10:64576105..64576133,-!p1@EGR2!0.94!16.21!EGR2;;chr12:124812308..124812313,-!p57@NCOR2!0.94!7.78!NCOR2;;chr6:106546731..106546755,+!p5@PRDM1!0.94!7.78!PRDM1;;chr19:45251395..45251432,+!p8@BCL3!0.94!7.78!BCL3;;chr9:20382446..20382493,-!p4@MLLT3!0.94!7.78!MLLT3;;chr5:140080022..140080042,+!p1@ZMAT2!0.92!412.43!ZMAT2;;chr3:187463248..187463264,-!p1@BCL6!0.92!162.77!BCL6;;chr9:88969339..88969422,-!p2@ZCCHC6!0.92!59.66!ZCCHC6;;chr19:19779619..19779670,+!p1@ZNF101!0.92!21.40!ZNF101;;chr1:221052776..221052799,+!p1@HLX!0.92!13.62!HLX;;chr12:10854595..10854628,-!p7@CSDA!0.92!10.38!CSDA;;chr12:57505121..57505179,-!p1@STAT6!0.91!291.81!STAT6;;chr17:40440481..40440550,+!p1@STAT5A!0.91!53.17!STAT5A;;chr10:8096772..8096787,+!p2@GATA3!0.91!8.43!GATA3;;chr10:111985777..111985788,+!p4@MXI1!0.91!7.13!MXI1;;chr1:151030388..151030419,+!p9@MLLT11!0.91!7.13!MLLT11;;chr1:23857087..23857100,-!p8@E2F2!0.91!7.13!E2F2;;chr1:47691303..47691319,-!p5@TAL1!0.91!7.13!TAL1;;chr4:109089901..109089930,-!p3@LEF1!0.91!7.13!LEF1;;chr14:99738059..99738086,-!p2@BCL11B!0.91!7.13!BCL11B;;chr1:156470494..156470505,-!p3@MEF2D!0.90!10.38!MEF2D;;chr4:140098339..140098392,-!p1@ELF2!0.89!59.01!ELF2;;chr6:91006518..91006570,-!p1@BACH2!0.89!16.21!BACH2;;chr9:88969303..88969335,-!p1@ZCCHC6!0.88!64.20!ZCCHC6;;chr3:71632864..71632885,-!p4@FOXP1!0.88!23.35!FOXP1;;chr6:106534192..106534224,+!p1@PRDM1!0.88!19.45!PRDM1;;chr8:37963466..37963506,+!p3@ASH2L!0.88!8.43!ASH2L;;chr6:108880956..108881011,+!p1@FOXO3!0.87!44.74!FOXO3;;chr1:158979872..158979898,+!p3@IFI16!0.87!20.75!IFI16;;chr2:231084639..231084654,-!p2@SP110!0.87!11.02!SP110;;chr2:68615063..68615089,+!p4@PLEK!0.87!6.48!PLEK;;chr3:18480217..18480239,-!p3@SATB1!0.87!6.48!SATB1;;chr4:109090075..109090095,-!p2@LEF1!0.87!6.48!LEF1;;ch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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000178;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 40: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090612%252c%2520donation1.CNhs11672.12182-129A4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090612%252c%2520donation1.CNhs11672.12182-129A4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090612%252c%2520donation1.CNhs11672.12182-129A4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090612%252c%2520donation1.CNhs11672.12182-129A4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090612%252c%2520donation1.CNhs11672.12182-129A4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:12182-129A4 | |id=FF:12182-129A4 | ||
|is_a=EFO:0002091;;FF:0000002;;FF:0000281 | |is_a=EFO:0002091;;FF:0000002;;FF:0000281 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11672!RDhi10003 | |library_id=CNhs11672!RDhi10003 | ||
|library_id_phase_based= | |library_id_phase_based=2:CNhs11672 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12182 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12182 | |||
|name=Whole blood (ribopure), donor090612, donation1 | |name=Whole blood (ribopure), donor090612, donation1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 50: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11672,LSID808,release008,COMPLETED | |profile_hcage=CNhs11672,LSID808,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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|top_motifs=GATA6:3.69827070413;ETS1,2:2.56663268115;SPI1:2.54037766143;SPIB:2.47721001512;FOXO1,3,4:2.46134004306;ELF1,2,4:2.19542326258;FOX{D1,D2}:2.06513782894;RUNX1..3:1.96312023247;SPZ1:1.96067589421;DMAP1_NCOR{1,2}_SMARC:1.88574610271;T:1.83854832212;STAT1,3:1.79903364146;EP300:1.61305447651;CEBPA,B_DDIT3:1.57029963469;STAT5{A,B}:1.54471361273;FOXD3:1.53160293704;FOX{F1,F2,J1}:1.49198466518;IRF7:1.41051092171;FOXP3:1.35951217636;PAX3,7:1.30498099867;NANOG{mouse}:1.25352599756;FOXN1:1.22290667938;TFAP4:1.14988250836;FOX{I1,J2}:1.14754433036;TLX2:1.09182023882;ZNF148:1.04403555611;POU5F1:1.01506536215;IRF1,2:1.00661175176;NFE2L2:0.983998687196;PAX2:0.927196603228;RXRA_VDR{dimer}:0.921024799314;TGIF1:0.880000685985;RBPJ:0.845776103478;ZNF423:0.844366501262;NFATC1..3:0.811953373175;TFCP2:0.727416090624;IKZF2:0.641394974493;NKX3-2:0.62661443327;NFIL3:0.6138194972;POU2F1..3:0.610478446844;NFIX:0.5913785063;STAT2,4,6:0.564939528806;SMAD1..7,9:0.560782778854;HLF:0.551917893195;HMX1:0.546007475982;ZEB1:0.533617724345;MYFfamily:0.522663070619;NR1H4:0.504309856307;SREBF1,2:0.474308458268;MYOD1:0.45055265826;BPTF:0.412539868868;NR6A1:0.40127686932;TOPORS:0.38437351319;HBP1_HMGB_SSRP1_UBTF:0.334123740894;RREB1:0.313112132327;GATA4:0.312525983688;CDX1,2,4:0.309910339686;ATF5_CREB3:0.301088196717;RFX2..5_RFXANK_RFXAP:0.239609191073;TAL1_TCF{3,4,12}:0.232055970259;NFE2L1:0.231252520717;ALX1:0.226354950983;NFE2:0.220564549037;NFKB1_REL_RELA:0.209486676448;SRF:0.209197687034;MZF1:0.197306647764;NKX3-1:0.185705674033;HOXA9_MEIS1:0.174323533834;CREB1:0.156730550843;BREu{core}:0.135912439128;PDX1:0.114026741196;MAZ:0.110997668452;RORA:0.0876785752046;FOXA2:0.0833119759516;ZNF238:0.0811360988847;LMO2:0.0494130769344;PPARG:0.0436001337247;SNAI1..3:0.0194841299121;CUX2:0.0091134407689;EVI1:-0.0374074256605;MYB:-0.0409491739606;NKX2-2,8:-0.0843476352516;MAFB:-0.118206367967;GLI1..3:-0.172490237898;REST:-0.173281658069;NKX2-1,4:-0.196772418567;POU1F1:-0.218655811744;SP1:-0.23469832494;FOXP1:-0.243121169488;BACH2:-0.309075942987;PAX4:-0.323762582708;OCT4_SOX2{dimer}:-0.329507920318;LEF1_TCF7_TCF7L1,2:-0.33133960185;XCPE1{core}:-0.33251275258;FOSL2:-0.38119169038;ATF2:-0.390919731874;ESR1:-0.391141198576;CRX:-0.403123172755;ALX4:-0.417860502298;DBP:-0.425374068464;ELK1,4_GABP{A,B1}:-0.429736496967;RFX1:-0.439794225619;JUN:-0.469645024563;ZFP161:-0.506851680609;FOS_FOS{B,L1}_JUN{B,D}:-0.507172483094;PRDM1:-0.517243236181;PITX1..3:-0.530852658683;NHLH1,2:-0.542060882797;ADNP_IRX_SIX_ZHX:-0.55004845934;AIRE:-0.557055191181;MEF2{A,B,C,D}:-0.578967808569;NR5A1,2:-0.584047203889;VSX1,2:-0.595968159162;PBX1:-0.604280731352;ATF4:-0.641417688238;NR3C1:-0.657244336924;HNF4A_NR2F1,2:-0.662699159207;ZBTB16:-0.663351669218;MTE{core}:-0.691767987868;TFAP2{A,C}:-0.718241161938;KLF4:-0.721557153138;HIF1A:-0.735082732209;HNF1A:-0.749489738365;PRRX1,2:-0.755345858247;FOXQ1:-0.755829265146;NRF1:-0.797929407339;POU6F1:-0.810175911399;GTF2I:-0.821241936781;PATZ1:-0.840012652366;PAX5:-0.848845404808;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.852835075041;FOXL1:-0.853416371069;NFY{A,B,C}:-0.862695911155;EN1,2:-0.877019952436;AR:-0.89117577318;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.910957760054;ZNF143:-0.921180565845;TFAP2B:-0.971023208008;NKX6-1,2:-0.995306874447;HIC1:-0.996247560379;SOX2:-1.01029774702;PAX8:-1.01779732167;MED-1{core}:-1.02496847997;MTF1:-1.02792753249;EGR1..3:-1.03897303192;TBX4,5:-1.04500898152;NKX2-3_NKX2-5:-1.0804844524;GZF1:-1.08198497344;ARID5B:-1.09084214342;RXR{A,B,G}:-1.10517529156;XBP1:-1.11188693507;HMGA1,2:-1.12152096175;TBP:-1.12775935179;SOX5:-1.16842671919;TLX1..3_NFIC{dimer}:-1.18628446115;ATF6:-1.21465837576;SOX{8,9,10}:-1.27739645257;PAX6:-1.27787636326;NANOG:-1.29589750394;YY1:-1.33032093069;LHX3,4:-1.34350756253;EBF1:-1.35716122379;E2F1..5:-1.36702685626;AHR_ARNT_ARNT2:-1.39160217785;MYBL2:-1.39789634167;GFI1:-1.46511475043;TP53:-1.49680664567;GCM1,2:-1.5333452977;HOX{A6,A7,B6,B7}:-1.57329606164;UFEwm:-1.59347972468;ZIC1..3:-1.60905016721;HOX{A4,D4}:-1.634352628;TEAD1:-1.65531575735;GFI1B:-1.66190706776;GTF2A1,2:-1.70614236199;ZBTB6:-1.73909529112;ESRRA:-1.76063282561;HES1:-1.86147283755;bHLH_family:-1.93525722579;FOXM1:-1.95563028573;HSF1,2:-1.99725551436;POU3F1..4:-2.00787258884;HAND1,2:-2.02496606749;ONECUT1,2:-2.0588916936;PAX1,9:-2.08557192812;HOX{A5,B5}:-2.17166213097;SOX17:-2.18127182542;CDC5L:-2.25068263654;TFDP1:-2.27798069466;ZNF384:-2.37241303206;TEF:-2.48715230231;IKZF1:-2.92537273705 | |top_motifs=GATA6:3.69827070413;ETS1,2:2.56663268115;SPI1:2.54037766143;SPIB:2.47721001512;FOXO1,3,4:2.46134004306;ELF1,2,4:2.19542326258;FOX{D1,D2}:2.06513782894;RUNX1..3:1.96312023247;SPZ1:1.96067589421;DMAP1_NCOR{1,2}_SMARC:1.88574610271;T:1.83854832212;STAT1,3:1.79903364146;EP300:1.61305447651;CEBPA,B_DDIT3:1.57029963469;STAT5{A,B}:1.54471361273;FOXD3:1.53160293704;FOX{F1,F2,J1}:1.49198466518;IRF7:1.41051092171;FOXP3:1.35951217636;PAX3,7:1.30498099867;NANOG{mouse}:1.25352599756;FOXN1:1.22290667938;TFAP4:1.14988250836;FOX{I1,J2}:1.14754433036;TLX2:1.09182023882;ZNF148:1.04403555611;POU5F1:1.01506536215;IRF1,2:1.00661175176;NFE2L2:0.983998687196;PAX2:0.927196603228;RXRA_VDR{dimer}:0.921024799314;TGIF1:0.880000685985;RBPJ:0.845776103478;ZNF423:0.844366501262;NFATC1..3:0.811953373175;TFCP2:0.727416090624;IKZF2:0.641394974493;NKX3-2:0.62661443327;NFIL3:0.6138194972;POU2F1..3:0.610478446844;NFIX:0.5913785063;STAT2,4,6:0.564939528806;SMAD1..7,9:0.560782778854;HLF:0.551917893195;HMX1:0.546007475982;ZEB1:0.533617724345;MYFfamily:0.522663070619;NR1H4:0.504309856307;SREBF1,2:0.474308458268;MYOD1:0.45055265826;BPTF:0.412539868868;NR6A1:0.40127686932;TOPORS:0.38437351319;HBP1_HMGB_SSRP1_UBTF:0.334123740894;RREB1:0.313112132327;GATA4:0.312525983688;CDX1,2,4:0.309910339686;ATF5_CREB3:0.301088196717;RFX2..5_RFXANK_RFXAP:0.239609191073;TAL1_TCF{3,4,12}:0.232055970259;NFE2L1:0.231252520717;ALX1:0.226354950983;NFE2:0.220564549037;NFKB1_REL_RELA:0.209486676448;SRF:0.209197687034;MZF1:0.197306647764;NKX3-1:0.185705674033;HOXA9_MEIS1:0.174323533834;CREB1:0.156730550843;BREu{core}:0.135912439128;PDX1:0.114026741196;MAZ:0.110997668452;RORA:0.0876785752046;FOXA2:0.0833119759516;ZNF238:0.0811360988847;LMO2:0.0494130769344;PPARG:0.0436001337247;SNAI1..3:0.0194841299121;CUX2:0.0091134407689;EVI1:-0.0374074256605;MYB:-0.0409491739606;NKX2-2,8:-0.0843476352516;MAFB:-0.118206367967;GLI1..3:-0.172490237898;REST:-0.173281658069;NKX2-1,4:-0.196772418567;POU1F1:-0.218655811744;SP1:-0.23469832494;FOXP1:-0.243121169488;BACH2:-0.309075942987;PAX4:-0.323762582708;OCT4_SOX2{dimer}:-0.329507920318;LEF1_TCF7_TCF7L1,2:-0.33133960185;XCPE1{core}:-0.33251275258;FOSL2:-0.38119169038;ATF2:-0.390919731874;ESR1:-0.391141198576;CRX:-0.403123172755;ALX4:-0.417860502298;DBP:-0.425374068464;ELK1,4_GABP{A,B1}:-0.429736496967;RFX1:-0.439794225619;JUN:-0.469645024563;ZFP161:-0.506851680609;FOS_FOS{B,L1}_JUN{B,D}:-0.507172483094;PRDM1:-0.517243236181;PITX1..3:-0.530852658683;NHLH1,2:-0.542060882797;ADNP_IRX_SIX_ZHX:-0.55004845934;AIRE:-0.557055191181;MEF2{A,B,C,D}:-0.578967808569;NR5A1,2:-0.584047203889;VSX1,2:-0.595968159162;PBX1:-0.604280731352;ATF4:-0.641417688238;NR3C1:-0.657244336924;HNF4A_NR2F1,2:-0.662699159207;ZBTB16:-0.663351669218;MTE{core}:-0.691767987868;TFAP2{A,C}:-0.718241161938;KLF4:-0.721557153138;HIF1A:-0.735082732209;HNF1A:-0.749489738365;PRRX1,2:-0.755345858247;FOXQ1:-0.755829265146;NRF1:-0.797929407339;POU6F1:-0.810175911399;GTF2I:-0.821241936781;PATZ1:-0.840012652366;PAX5:-0.848845404808;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.852835075041;FOXL1:-0.853416371069;NFY{A,B,C}:-0.862695911155;EN1,2:-0.877019952436;AR:-0.89117577318;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.910957760054;ZNF143:-0.921180565845;TFAP2B:-0.971023208008;NKX6-1,2:-0.995306874447;HIC1:-0.996247560379;SOX2:-1.01029774702;PAX8:-1.01779732167;MED-1{core}:-1.02496847997;MTF1:-1.02792753249;EGR1..3:-1.03897303192;TBX4,5:-1.04500898152;NKX2-3_NKX2-5:-1.0804844524;GZF1:-1.08198497344;ARID5B:-1.09084214342;RXR{A,B,G}:-1.10517529156;XBP1:-1.11188693507;HMGA1,2:-1.12152096175;TBP:-1.12775935179;SOX5:-1.16842671919;TLX1..3_NFIC{dimer}:-1.18628446115;ATF6:-1.21465837576;SOX{8,9,10}:-1.27739645257;PAX6:-1.27787636326;NANOG:-1.29589750394;YY1:-1.33032093069;LHX3,4:-1.34350756253;EBF1:-1.35716122379;E2F1..5:-1.36702685626;AHR_ARNT_ARNT2:-1.39160217785;MYBL2:-1.39789634167;GFI1:-1.46511475043;TP53:-1.49680664567;GCM1,2:-1.5333452977;HOX{A6,A7,B6,B7}:-1.57329606164;UFEwm:-1.59347972468;ZIC1..3:-1.60905016721;HOX{A4,D4}:-1.634352628;TEAD1:-1.65531575735;GFI1B:-1.66190706776;GTF2A1,2:-1.70614236199;ZBTB6:-1.73909529112;ESRRA:-1.76063282561;HES1:-1.86147283755;bHLH_family:-1.93525722579;FOXM1:-1.95563028573;HSF1,2:-1.99725551436;POU3F1..4:-2.00787258884;HAND1,2:-2.02496606749;ONECUT1,2:-2.0588916936;PAX1,9:-2.08557192812;HOX{A5,B5}:-2.17166213097;SOX17:-2.18127182542;CDC5L:-2.25068263654;TFDP1:-2.27798069466;ZNF384:-2.37241303206;TEF:-2.48715230231;IKZF1:-2.92537273705 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12182-129A4;search_select_hide=table117:FF:12182-129A4 | |||
}} | }} |
Latest revision as of 18:33, 4 June 2020
Name: | Whole blood (ribopure), donor090612, donation1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11672,RDhi10003 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
ExpandAdditional information |
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ExpandCAGE Accession numbers |
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ExpandDownload raw sequence, BAM & CTSS |
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11672
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11672
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11672
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0000281 human whole blood sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000178 (blood)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000179 (haemolymphatic fluid)
0000463 (organism substance)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0002390 (hematopoietic system)
0004535 (cardiovascular system)
0002193 (hemolymphoid system)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0010053 (human blood - adult sample)
0000004 (tissue sample)
0000281 (human whole blood sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA