UBERON:0001130: Difference between revisions
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|located_in= | |located_in= | ||
|name=vertebral column | |name=vertebral column | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0011138 | |part_of=UBERON:0011138 |
Latest revision as of 17:16, 12 September 2014
Name: | vertebral column | ||
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Namespace: | FANTOM | ||
Definition: | "Subdivision of skeletal system that consists of all the vertebra and associated skeletal elements and joints in the body." [https://sourceforge.net/tracker/?func | ||
Xrefs: |
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Synonyms: |
"backbone" NARROW [FMA:13478] "columna vertebralis" RELATED [BTO:0000818] "spinal column" RELATED [MESH:A.02.835.232.834] "spine" BROAD [FMA:13478] "vertebral column skeleton" NARROW [AAO:0000699] | ||
Comments: | Editor notes: Note that in contrast to VSAO, this is a subset of the skeletal system, and thus includes intervertebral joints, cartilage and ligaments etc. Some ontologies such as AAO seem to purely refer to the skeleton | ||
Alt_id: | UBERON:FMA_13478-MA_0002416-XAO_0003074-ZFA_0001559 | ||
Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0000075(subdivision of skeletal system),UBERON:0004120(mesoderm-derived structure) |
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part_of: | UBERON:0011138(post-cranial axial skeletal system) |
Children
part of: | UBERON:0001468 (intervertebral joint),UBERON:0002412 (vertebra),UBERON:0010913 (vertebral element),UBERON:0011094 (vertebra cartilage element),UBERON:0011095 (vertebra pre-cartilage condensation),UBERON:0015005 (vertebra endochondral element) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11219-116B4 (Mesenchymal Stem Cells - Vertebral, donor1)
- 11248-116E6 (Anulus Pulposus Cell, donor1)
- 11252-116F1 (Nucleus Pulposus Cell, donor1)
- 11409-118E5 (Nucleus Pulposus Cell, donor2)
- 11462-119B4 (Nucleus Pulposus Cell, donor3)
- 11463-119B5 (Anulus Pulposus Cell, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001130 (vertebral column), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical cluster that consists of all the vertebra in the body.[VSAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.