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UBERON:0001130: Difference between revisions

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|located_in=
|located_in=
|name=vertebral column
|name=vertebral column
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0011138
|part_of=UBERON:0011138

Latest revision as of 17:16, 12 September 2014

Name:vertebral column
Namespace:FANTOM
Definition:"Subdivision of skeletal system that consists of all the vertebra and associated skeletal elements and joints in the body." [https://sourceforge.net/tracker/?func
Xrefs:
links:

AAO:0000699
AAO:0000734
BTO:0000818
EFO:0001369
EHDA:10119
EMAPA:16666
FMA:13478
GAID:106
galen:SpinalColumn
MA:0002416
MESH:A.02.835.232.834
ncithesaurus:Spinal_Cord_Column
ncithesaurus:Vertebral_Column
NIF_Subcellular:sao1145756102
OpenCyc:Mx4rv2j-CpwpEbGdrcN5Y29ycA
OpenCyc:Mx4rv6GF55wpEbGdrcN5Y29ycA
OpenCyc:Mx4rvVkFEpwpEbGdrcN5Y29ycA
SCTID:44300000
TAO:0001559
VHOG:0001142
VSAO:0000185
XAO:0003074

ZFA:0001559
Synonyms: "backbone" NARROW [FMA:13478]
"columna vertebralis" RELATED [BTO:0000818]
"spinal column" RELATED [MESH:A.02.835.232.834]
"spine" BROAD [FMA:13478]
"vertebral column skeleton" NARROW [AAO:0000699]
Comments:Editor notes: Note that in contrast to VSAO, this is a subset of the skeletal system, and thus includes intervertebral joints, cartilage and ligaments etc. Some ontologies such as AAO seem to purely refer to the skeleton
Alt_id: UBERON:FMA_13478-MA_0002416-XAO_0003074-ZFA_0001559
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000075(subdivision of skeletal system),UBERON:0004120(mesoderm-derived structure)
part_of:UBERON:0011138(post-cranial axial skeletal system)



Children

part of:UBERON:0001468 (intervertebral joint),UBERON:0002412 (vertebra),UBERON:0010913 (vertebral element),UBERON:0011094 (vertebra cartilage element),UBERON:0011095 (vertebra pre-cartilage condensation),UBERON:0015005 (vertebra endochondral element)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001130 (vertebral column), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data











Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical cluster that consists of all the vertebra in the body.[VSAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.