UBERON:0001277: Difference between revisions
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|located_in= | |located_in= | ||
|name=intestinal epithelium | |name=intestinal epithelium | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000160;;UBERON:0001242 | |part_of=UBERON:0000160;;UBERON:0001242 | ||
Latest revision as of 17:17, 12 September 2014
| Name: | intestinal epithelium | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Simple columnar epithelium that lines the intestine, sometimes pseudostratified, with absorptive brush-border cells and mucous goblet cells clearly visible. <a href | ||
| Xrefs: |
| ||
| Synonyms: |
"bowel epithelial tissue" EXACT [OBOL:automatic] "bowel epithelium" EXACT [OBOL:automatic] "epithelial tissue of bowel" EXACT [OBOL:automatic] "epithelial tissue of intestine" EXACT [OBOL:automatic] "epithelium of bowel" EXACT [OBOL:automatic] "epithelium of intestine" EXACT [OBOL:automatic] "intestine epithelial tissue" EXACT [OBOL:automatic] "intestine epithelium" RELATED [] "villous epithelium" EXACT [ZFA:0005124] | ||
| Comments: | This class was created automatically from a combination of ontologies | ||
| Alt_id: | UBERON:FMA_17229-ZFA_0005124 | ||
| Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000485(simple columnar epithelium),UBERON:0003350(epithelium of mucosa),UBERON:0003929(gut epithelium),UBERON:0004808(gastrointestinal system epithelium) |
|---|---|
| part_of: | UBERON:0000160(intestine),UBERON:0001242(intestinal mucosa) |
Children
| is a: | UBERON:0001902 (epithelium of small intestine) |
|---|---|
| part of: | CL:0000510 (paneth cell),UBERON:0001213 (intestinal villus),CL:0002563 (intestinal epithelial cell) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10420-106C6 (colon carcinoma cell line:COLO-320)
- 10511-107D7
- 10513-107D9 (colon carcinoma cell line:CACO-2)
- 10523-107F1
- 10557-107I8
- 10635-108I5
- 10653-109B5
- 10812-111B2 (normal intestinal epithelial cell line:FHs 74 Int)
- 11246-116E4 (Intestinal epithelial cells (polarized), donor1)
- 11848-124I3 (CD326+ enterocyte, pool1)
... further results Mouse (Mus musculus)
- 10420-106C6 (colon carcinoma cell line:COLO-320)
- 10511-107D7
- 10513-107D9 (colon carcinoma cell line:CACO-2)
- 10523-107F1
- 10557-107I8
- 10635-108I5
- 10653-109B5
- 10812-111B2 (normal intestinal epithelial cell line:FHs 74 Int)
- 11246-116E4 (Intestinal epithelial cells (polarized), donor1)
- 11848-124I3 (CD326+ enterocyte, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001277 (intestinal epithelium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.55e-98 | FFCP PHASE2:Hg19::chr9:35801527..35801540,+#_5f14daa9cb2e9b8e2c2d0c5211b5176e | p@chr9:35801527..35801540, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr9:35801527..35801540,+#_5f14daa9cb2e9b8e2c2d0c5211b5176e | p@chr9:35801527..35801540, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr8:122335239..122335244,+#_22372d00caf071c04e6e1e73cc442dc2 | p@chr8:122335239..122335244, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr8:122335239..122335244,+#_22372d00caf071c04e6e1e73cc442dc2 | p@chr8:122335239..122335244, + |
| 1.86e-71 | FFCP PHASE2:Mm9::chr17:57201412..57201418,-#_2e0e0751050731fe732ef2d8550e752b | p@chr17:57201412..57201418, - |
| 1.86e-71 | FFCP PHASE1:Mm9::chr17:57201412..57201418,-#_2e0e0751050731fe732ef2d8550e752b | p@chr17:57201412..57201418, - |
| 1.41e-68 | FFCP PHASE1:Mm9::chr4:155434167..155434177,+#_12736514d8c7e7f7ad4978884648f0e1 | p@chr4:155434167..155434177, + |
| 1.41e-68 | FFCP PHASE2:Mm9::chr4:155434167..155434177,+#_12736514d8c7e7f7ad4978884648f0e1 | p@chr4:155434167..155434177, + |
| 1.7e-67 | FFCP PHASE2:Mm9::chr8:64192378..64192389,+#_c2532a5063daf34237811b0b9fcd774f | p@chr8:64192378..64192389, + |
| 1.7e-67 | FFCP PHASE1:Mm9::chr8:64192378..64192389,+#_c2532a5063daf34237811b0b9fcd774f | p@chr8:64192378..64192389, + |
| 2.4e-66 | FFCP PHASE1:Hg19::chr6:22919616..22919625,-#_7048fba6bc3dda713b803b2881392f00 | p@chr6:22919616..22919625, - |
| 2.4e-66 | FFCP PHASE2:Hg19::chr9:129830560..129830568,+#_7048fba6bc3dda713b803b2881392f00 | p@chr9:129830560..129830568, + |
| 2.4e-66 | FFCP PHASE2:Hg19::chr7:117329764..117329777,+#_7048fba6bc3dda713b803b2881392f00 | p1@ENST00000429014 |
| 2.4e-66 | FFCP PHASE1:Hg19::chr9:129830560..129830568,+#_7048fba6bc3dda713b803b2881392f00 | p@chr9:129830560..129830568, + |
| 2.4e-66 | FFCP PHASE2:Hg19::chr2:127873614..127873626,+#_7048fba6bc3dda713b803b2881392f00 | p@chr2:127873614..127873626, + |
| 2.4e-66 | FFCP PHASE1:Hg19::chr7:117329764..117329777,+#_7048fba6bc3dda713b803b2881392f00 | p1@ENST00000429014 |
| 2.4e-66 | FFCP PHASE2:Hg19::chr1:111023361..111023366,+#_7048fba6bc3dda713b803b2881392f00 | p1@CYMP |
| 2.4e-66 | FFCP PHASE2:Hg19::chr18:7034928..7034943,-#_7048fba6bc3dda713b803b2881392f00 | p@chr18:7034928..7034943, - |
| 2.4e-66 | FFCP PHASE1:Hg19::chr2:127873614..127873626,+#_7048fba6bc3dda713b803b2881392f00 | p@chr2:127873614..127873626, + |
| 2.4e-66 | FFCP PHASE1:Hg19::chr1:111023361..111023366,+#_7048fba6bc3dda713b803b2881392f00 | p1@CYMP |
| 2.4e-66 | FFCP PHASE2:Hg19::chr13:46093155..46093164,+#_7048fba6bc3dda713b803b2881392f00 | p@chr13:46093155..46093164, + |
| 2.4e-66 | FFCP PHASE1:Hg19::chr18:7034928..7034943,-#_7048fba6bc3dda713b803b2881392f00 | p@chr18:7034928..7034943, - |
| 2.4e-66 | FFCP PHASE2:Hg19::chr6:22919616..22919625,-#_7048fba6bc3dda713b803b2881392f00 | p@chr6:22919616..22919625, - |
| 2.4e-66 | FFCP PHASE1:Hg19::chr13:46093155..46093164,+#_7048fba6bc3dda713b803b2881392f00 | p@chr13:46093155..46093164, + |
| 3.35e-66 | FFCP PHASE2:Hg19::chr20:17691468..17691474,-#_c5fbe3a48348b1afe09da4496ffa7bc7 | p@chr20:17691468..17691474, - |
| 3.35e-66 | FFCP PHASE1:Hg19::chr20:17691468..17691474,-#_c5fbe3a48348b1afe09da4496ffa7bc7 | p@chr20:17691468..17691474, - |
| 3.35e-66 | FFCP PHASE2:Hg19::chr2:205409703..205409714,+#_c5fbe3a48348b1afe09da4496ffa7bc7 | p@chr2:205409703..205409714, + |
| 3.35e-66 | FFCP PHASE2:Hg19::chr1:6420713..6420725,-#_c5fbe3a48348b1afe09da4496ffa7bc7 | p16@ACOT7 |
| 3.35e-66 | FFCP PHASE2:Hg19::chrX:21849506..21849512,-#_c5fbe3a48348b1afe09da4496ffa7bc7 | p@chrX:21849506..21849512, - |
| 3.35e-66 | FFCP PHASE1:Hg19::chr2:205409703..205409714,+#_c5fbe3a48348b1afe09da4496ffa7bc7 | p@chr2:205409703..205409714, + |
| 3.35e-66 | FFCP PHASE1:Hg19::chr1:6420713..6420725,-#_c5fbe3a48348b1afe09da4496ffa7bc7 | p16@ACOT7 |
| 3.35e-66 | FFCP PHASE1:Hg19::chrX:21849506..21849512,-#_c5fbe3a48348b1afe09da4496ffa7bc7 | p@chrX:21849506..21849512, - |
| 4.67e-66 | FFCP PHASE2:Hg19::chr2:28340361..28340371,+#_8f14625ba3d0d7ad5b1f0609d35ac5c6 | p@chr2:28340361..28340371, + |
| 4.67e-66 | FFCP PHASE2:Hg19::chr9:138591077..138591111,-#_8f14625ba3d0d7ad5b1f0609d35ac5c6 | p@chr9:138591077..138591111, - |
| 4.67e-66 | FFCP PHASE1:Hg19::chr11:89925073..89925074,+#_8f14625ba3d0d7ad5b1f0609d35ac5c6 | p@chr11:89925073..89925074, + |
| 4.67e-66 | FFCP PHASE1:Hg19::chr2:28340361..28340371,+#_8f14625ba3d0d7ad5b1f0609d35ac5c6 | p@chr2:28340361..28340371, + |
| 4.67e-66 | FFCP PHASE1:Hg19::chr9:138591077..138591111,-#_8f14625ba3d0d7ad5b1f0609d35ac5c6 | p@chr9:138591077..138591111, - |
| 4.67e-66 | FFCP PHASE2:Hg19::chr11:89925073..89925074,+#_8f14625ba3d0d7ad5b1f0609d35ac5c6 | p@chr11:89925073..89925074, + |
| 3.55e-65 | FFCP PHASE2:Mm9::chr3:122215917..122215967,-#_e57ca6e9a27e2ce1565ab3232c79b402 | p@chr3:122215917..122215967, - |
| 3.55e-65 | FFCP PHASE1:Mm9::chr3:122215917..122215967,-#_e57ca6e9a27e2ce1565ab3232c79b402 | p@chr3:122215917..122215967, - |
| 7.03e-65 | FFCP PHASE1:Mm9::chr2:143738263..143738267,+#_3d94fb60b4518756f0b5c8b80b70e547 | p@chr2:143738263..143738267, + |
| 7.03e-65 | FFCP PHASE2:Mm9::chr2:143738263..143738267,+#_3d94fb60b4518756f0b5c8b80b70e547 | p@chr2:143738263..143738267, + |
| 2.43e-61 | FFCP PHASE1:Mm9::chr5:135465906..135465912,+#_b8033ce264f1e858348835f254ab4fc5 | p@chr5:135465906..135465912, + |
| 2.43e-61 | FFCP PHASE2:Mm9::chr5:135465906..135465912,+#_b8033ce264f1e858348835f254ab4fc5 | p@chr5:135465906..135465912, + |
| 5.84e-61 | FFCP PHASE2:Mm9::chr7:4101973..4101978,-#_7ce70bdbf2d222efae735b37c899894d | p4@Leng9 |
| 5.84e-61 | FFCP PHASE1:Mm9::chr7:4101973..4101978,-#_7ce70bdbf2d222efae735b37c899894d | p4@Leng9 |
| 1.29e-60 | FFCP PHASE2:Mm9::chr7:4101821..4101832,-#_06426ab8272a70a48ba6cd8c5891a0a1 | p5@Leng9 |
| 1.29e-60 | FFCP PHASE1:Mm9::chr7:4101821..4101832,-#_06426ab8272a70a48ba6cd8c5891a0a1 | p5@Leng9 |
| 5.24e-58 | FFCP PHASE1:Mm9::chr12:86771033..86771037,-#_9613e0aa713778bcac15063a2d63a1fa | p@chr12:86771033..86771037, - |
| 5.24e-58 | FFCP PHASE2:Mm9::chr12:86771033..86771037,-#_9613e0aa713778bcac15063a2d63a1fa | p@chr12:86771033..86771037, - |
| 6.35e-57 | FFCP PHASE1:Mm9::chr5:145119593..145119596,+#_57aaec4fc472d7acdccd74d4ae5d240d | p@chr5:145119593..145119596, + |
| 6.35e-57 | FFCP PHASE2:Mm9::chr5:145119593..145119596,+#_57aaec4fc472d7acdccd74d4ae5d240d | p@chr5:145119593..145119596, + |
| 8.86e-57 | FFCP PHASE1:Mm9::chr13:49066571..49066574,-#_ff21f4706f2a54f972a3c44d2365c16d | p@chr13:49066571..49066574, - |
| 8.86e-57 | FFCP PHASE2:Mm9::chr13:49066571..49066574,-#_ff21f4706f2a54f972a3c44d2365c16d | p@chr13:49066571..49066574, - |
| 1.46e-56 | FFCP PHASE1:Mm9::chr11:96797681..96797709,-#_de10b43fb802cbf0365aa2c0716678b3 | p@chr11:96797681..96797709, - |
| 1.46e-56 | FFCP PHASE2:Mm9::chr11:96797681..96797709,-#_de10b43fb802cbf0365aa2c0716678b3 | p@chr11:96797681..96797709, - |
| 2.19e-56 | FFCP PHASE1:Mm9::chr18:36576247..36576252,-#_7d32566913575c760bd7b489b327a79e | p@chr18:36576247..36576252, - |
| 2.19e-56 | FFCP PHASE2:Mm9::chr18:36576247..36576252,-#_7d32566913575c760bd7b489b327a79e | p@chr18:36576247..36576252, - |
| 5.47e-56 | FFCP PHASE1:Mm9::chr9:66888939..66888949,+#_9f764d1715a8d5192e3ca90a8d106d49 | p@chr9:66888939..66888949, + |
| 5.47e-56 | FFCP PHASE2:Mm9::chr9:66888939..66888949,+#_9f764d1715a8d5192e3ca90a8d106d49 | p@chr9:66888939..66888949, + |
| 6.45e-56 | FFCP PHASE2:Mm9::chr17:46693370..46693378,+#_ca05fcaebac12321071eab5e6c35ac8d | p@chr17:46693370..46693378, + |
| 6.45e-56 | FFCP PHASE1:Mm9::chr17:46693370..46693378,+#_ca05fcaebac12321071eab5e6c35ac8d | p@chr17:46693370..46693378, + |
| 1.93e-53 | FFCP PHASE2:Mm9::chr7:52317191..52317193,+#_5fb4dac18f4de899971cb843c2652fba | p@chr7:52317191..52317193, + |
| 1.93e-53 | FFCP PHASE1:Mm9::chr7:52317191..52317193,+#_5fb4dac18f4de899971cb843c2652fba | p@chr7:52317191..52317193, + |
| 2.55e-53 | FFCP PHASE2:Mm9::chr5:135442713..135442733,+#_a62e44d360f7f8f8b40867882353a6ac | p@chr5:135442713..135442733, + |
| 2.55e-53 | FFCP PHASE1:Mm9::chr5:135442713..135442733,+#_a62e44d360f7f8f8b40867882353a6ac | p@chr5:135442713..135442733, + |
| 5.3e-53 | FFCP PHASE1:Mm9::chr2:38781010..38781017,+#_b5ea6a098da589319097c6d8b76e1277 | p@chr2:38781010..38781017, + |
| 5.3e-53 | FFCP PHASE2:Mm9::chr2:38781010..38781017,+#_b5ea6a098da589319097c6d8b76e1277 | p@chr2:38781010..38781017, + |
| 3.46e-52 | FFCP PHASE2:Mm9::chr10:80565428..80565433,+#_abb205a18436bbc3925f8c5982a3ea41 | p@chr10:80565428..80565433, + |
| 3.46e-52 | FFCP PHASE1:Mm9::chr10:80565428..80565433,+#_abb205a18436bbc3925f8c5982a3ea41 | p@chr10:80565428..80565433, + |
| 7.4e-52 | FFCP PHASE2:Mm9::chr11:35759012..35759018,+#_584a424fda2a68fe4c4181b41852d720 | p@chr11:35759012..35759018, + |
| 7.4e-52 | FFCP PHASE1:Mm9::chr11:35759012..35759018,+#_584a424fda2a68fe4c4181b41852d720 | p@chr11:35759012..35759018, + |
| 1.0e-51 | FFCP PHASE2:Mm9::chr18:66636209..66636215,-#_5f0875edfb8ca63afae5d304b4dbe500 | p@chr18:66636209..66636215, - |
| 1.0e-51 | FFCP PHASE1:Mm9::chr18:66636209..66636215,-#_5f0875edfb8ca63afae5d304b4dbe500 | p@chr18:66636209..66636215, - |
| 1.17e-51 | FFCP PHASE1:Mm9::chr16:78268076..78268083,-#_ff045949e558e5a6c13189d8f6867e55 | p@chr16:78268076..78268083, - |
| 1.17e-51 | FFCP PHASE2:Mm9::chr16:78268076..78268083,-#_ff045949e558e5a6c13189d8f6867e55 | p@chr16:78268076..78268083, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr3:139373728..139373733,+#_849581c949fa06749f8828a1928efcb7 | p@chr3:139373728..139373733, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr18:39550015..39550034,+#_849581c949fa06749f8828a1928efcb7 | p@chr18:39550015..39550034, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr1:163338283..163338286,+#_849581c949fa06749f8828a1928efcb7 | p@chr1:163338283..163338286, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr12:65277574..65277589,+#_849581c949fa06749f8828a1928efcb7 | p2@FLJ41278 |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:127681013..127681042,-#_849581c949fa06749f8828a1928efcb7 | p@chr8:127681013..127681042, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr13:110258158..110258170,-#_849581c949fa06749f8828a1928efcb7 | p@chr13:110258158..110258170, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr9:125898916..125898941,-#_849581c949fa06749f8828a1928efcb7 | p14@STRBP |
| 3.1e-50 | FFCP PHASE1:Hg19::chr1:93128346..93128356,-#_849581c949fa06749f8828a1928efcb7 | p@chr1:93128346..93128356, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:127445866..127445873,+#_849581c949fa06749f8828a1928efcb7 | p@chr8:127445866..127445873, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr14:26793415..26793426,-#_849581c949fa06749f8828a1928efcb7 | p@chr14:26793415..26793426, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr9:104610923..104610939,-#_849581c949fa06749f8828a1928efcb7 | p@chr9:104610923..104610939, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr8:127440115..127440120,+#_849581c949fa06749f8828a1928efcb7 | p@chr8:127440115..127440120, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:128807259..128807281,+#_849581c949fa06749f8828a1928efcb7 | p@chr8:128807259..128807281, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr8:128415944..128415958,+#_849581c949fa06749f8828a1928efcb7 | p@chr8:128415944..128415958, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr16:53671764..53671771,-#_849581c949fa06749f8828a1928efcb7 | p@chr16:53671764..53671771, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr2:159306961..159306975,+#_849581c949fa06749f8828a1928efcb7 | p@chr2:159306961..159306975, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr7:87049573..87049608,-#_849581c949fa06749f8828a1928efcb7 | p@chr7:87049573..87049608, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr3:148164872..148164919,-#_849581c949fa06749f8828a1928efcb7 | p@chr3:148164872..148164919, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr18:53252911..53252918,-#_849581c949fa06749f8828a1928efcb7 | p106@TCF4 |
| 3.1e-50 | FFCP PHASE2:Hg19::chr12:68155058..68155064,-#_849581c949fa06749f8828a1928efcb7 | p@chr12:68155058..68155064, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr6:104674708..104674749,-#_849581c949fa06749f8828a1928efcb7 | p@chr6:104674708..104674749, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr3:148164659..148164667,-#_849581c949fa06749f8828a1928efcb7 | p@chr3:148164659..148164667, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr12:68155058..68155064,-#_849581c949fa06749f8828a1928efcb7 | p@chr12:68155058..68155064, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr6:8446968..8446983,+#_849581c949fa06749f8828a1928efcb7 | p@chr6:8446968..8446983, + |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Simple columnar epithelium that lines the intestine, sometimes pseudostratified, with absorptive brush-border cells and mucous goblet cells clearly visible. Crosnier et al. 2005[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
