UBERON:0002079: Difference between revisions
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|is_obsolete= | |is_obsolete= | ||
|located_in= | |located_in= | ||
|name=left atrium | |name=left cardiac atrium | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 17:25, 12 September 2014
| Name: | left cardiac atrium | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Left cardiac chamber which is continuous with the pulmonary venous trunk.[FMA]" [FMA:FMA, Wikipedia:Left_atrium] | ||
| Xrefs: |
| ||
| Synonyms: |
"atrium sinistrum" RELATED LATIN [Wikipedia:Left_atrium] "cardiac left atrium" EXACT [] "heart left atrium" EXACT [] "left atrium of heart" EXACT [] "left cardiac atrium" EXACT [] | ||
| Comments: | This class was created automatically from a combination of ontologies | ||
| Alt_id: | UBERON:FMA_7097-MA_0000074 | ||
| Subset: | uberon_slim |
200px-Diagram_of_the_human_heart_%28cropped%29.svg.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002081(cardiac atrium),UBERON:0015212(lateral structure) |
|---|
Children
| derives from: | FF:0010079 (human left atrium - adult sample) |
|---|---|
| part of: | UBERON:0005966 (outflow part of left atrium) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10079-102A7 (left atrium, adult, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002079 (left cardiac atrium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE2:Hg19::chr1:43676416..43676417,-#_60a5f92478c974c50dd349931d83ea10 | p@chr1:43676416..43676417, - |
| 5.42e-195 | FFCP PHASE1:Hg19::chr1:43676416..43676417,-#_60a5f92478c974c50dd349931d83ea10 | p@chr1:43676416..43676417, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr1:11907474..11907481,-#_60a5f92478c974c50dd349931d83ea10 | p10@NPPA |
| 5.42e-195 | FFCP PHASE2:Hg19::chr17:79385898..79385905,-#_60a5f92478c974c50dd349931d83ea10 | p@chr17:79385898..79385905, - |
| 5.42e-195 | FFCP PHASE1:Hg19::chr17:79385898..79385905,-#_60a5f92478c974c50dd349931d83ea10 | p@chr17:79385898..79385905, - |
| 5.42e-195 | FFCP PHASE1:Hg19::chr1:11907474..11907481,-#_60a5f92478c974c50dd349931d83ea10 | p10@NPPA |
| 9.37e-99 | FFCP PHASE1:Hg19::chr1:11907408..11907415,+#_00f4b8a07bd411992f79f399ec59753b | p@chr1:11907408..11907415, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr1:11906044..11906050,-#_00f4b8a07bd411992f79f399ec59753b | p@chr1:11906044..11906050, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr15:26640258..26640266,+#_00f4b8a07bd411992f79f399ec59753b | p4@ENST00000451579 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr1:11907440..11907450,+#_00f4b8a07bd411992f79f399ec59753b | p@chr1:11907440..11907450, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr1:11907415..11907418,-#_00f4b8a07bd411992f79f399ec59753b | p15@NPPA |
| 9.37e-99 | FFCP PHASE1:Hg19::chr12:94730118..94730123,-#_00f4b8a07bd411992f79f399ec59753b | p13@CCDC41 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr1:11907318..11907327,-#_00f4b8a07bd411992f79f399ec59753b | p7@NPPA |
| 9.37e-99 | FFCP PHASE2:Hg19::chr15:26640282..26640290,+#_00f4b8a07bd411992f79f399ec59753b | p5@ENST00000451579 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr1:109849679..109849688,-#_00f4b8a07bd411992f79f399ec59753b | p3@MYBPHL |
| 9.37e-99 | FFCP PHASE1:Hg19::chr1:11907440..11907450,+#_00f4b8a07bd411992f79f399ec59753b | p@chr1:11907440..11907450, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr12:70004523..70004545,-#_00f4b8a07bd411992f79f399ec59753b | p3@LRRC10 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr4:8321842..8321846,+#_00f4b8a07bd411992f79f399ec59753b | p5@ENST00000509453 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr1:11907318..11907327,-#_00f4b8a07bd411992f79f399ec59753b | p7@NPPA |
| 9.37e-99 | FFCP PHASE1:Hg19::chr1:109849679..109849688,-#_00f4b8a07bd411992f79f399ec59753b | p3@MYBPHL |
| 9.37e-99 | FFCP PHASE2:Hg19::chr12:94730118..94730123,-#_00f4b8a07bd411992f79f399ec59753b | p13@CCDC41 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr12:70004523..70004545,-#_00f4b8a07bd411992f79f399ec59753b | p3@LRRC10 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr15:26640258..26640266,+#_00f4b8a07bd411992f79f399ec59753b | p4@ENST00000451579 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr1:11907408..11907415,+#_00f4b8a07bd411992f79f399ec59753b | p@chr1:11907408..11907415, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr4:8321842..8321846,+#_00f4b8a07bd411992f79f399ec59753b | p5@ENST00000509453 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr1:11906044..11906050,-#_00f4b8a07bd411992f79f399ec59753b | p@chr1:11906044..11906050, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr15:26640282..26640290,+#_00f4b8a07bd411992f79f399ec59753b | p5@ENST00000451579 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr1:11907415..11907418,-#_00f4b8a07bd411992f79f399ec59753b | p15@NPPA |
| 2.55e-98 | FFCP PHASE2:Hg19::chr6:138423239..138423250,-#_15c146d05bb27c44126323d538ac36d7 | p@chr6:138423239..138423250, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr11:45274102..45274110,-#_15c146d05bb27c44126323d538ac36d7 | p@chr11:45274102..45274110, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr8:142431453..142431493,+#_15c146d05bb27c44126323d538ac36d7 | p@chr8:142431453..142431493, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr14:23862118..23862122,-#_15c146d05bb27c44126323d538ac36d7 | p18@MYH6 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr1:207996071..207996074,-#_15c146d05bb27c44126323d538ac36d7 | p5@C1orf132 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr6:138423239..138423250,-#_15c146d05bb27c44126323d538ac36d7 | p@chr6:138423239..138423250, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr11:45274072..45274078,-#_15c146d05bb27c44126323d538ac36d7 | p@chr11:45274072..45274078, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr11:45274102..45274110,-#_15c146d05bb27c44126323d538ac36d7 | p@chr11:45274102..45274110, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr14:23862118..23862122,-#_15c146d05bb27c44126323d538ac36d7 | p18@MYH6 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr18:28807557..28807562,-#_15c146d05bb27c44126323d538ac36d7 | p@chr18:28807557..28807562, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr18:28807557..28807562,-#_15c146d05bb27c44126323d538ac36d7 | p@chr18:28807557..28807562, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:50059270..50059276,-#_15c146d05bb27c44126323d538ac36d7 | p@chr2:50059270..50059276, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr8:142431453..142431493,+#_15c146d05bb27c44126323d538ac36d7 | p@chr8:142431453..142431493, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr11:45274072..45274078,-#_15c146d05bb27c44126323d538ac36d7 | p@chr11:45274072..45274078, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr1:207996071..207996074,-#_15c146d05bb27c44126323d538ac36d7 | p5@C1orf132 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:50059270..50059276,-#_15c146d05bb27c44126323d538ac36d7 | p@chr2:50059270..50059276, - |
| 1.23e-66 | FFCP PHASE2:Hg19::chr1:11905799..11905806,-#_7cd48367c3aa61777f0269d3779ff7b1 | p@chr1:11905799..11905806, - |
| 1.23e-66 | FFCP PHASE1:Hg19::chr14:104315251..104315260,-#_7cd48367c3aa61777f0269d3779ff7b1 | p@chr14:104315251..104315260, - |
| 1.23e-66 | FFCP PHASE2:Hg19::chr1:11907265..11907271,-#_7cd48367c3aa61777f0269d3779ff7b1 | p9@NPPA |
| 1.23e-66 | FFCP PHASE2:Hg19::chr15:44172096..44172101,-#_7cd48367c3aa61777f0269d3779ff7b1 | p@chr15:44172096..44172101, - |
| 1.23e-66 | FFCP PHASE1:Hg19::chr7:145378479..145378484,-#_7cd48367c3aa61777f0269d3779ff7b1 | p1@ENST00000422084 |
| 1.23e-66 | FFCP PHASE1:Hg19::chr12:114886422..114886429,-#_7cd48367c3aa61777f0269d3779ff7b1 | p@chr12:114886422..114886429, - |
| 1.23e-66 | FFCP PHASE1:Hg19::chr1:11905799..11905806,-#_7cd48367c3aa61777f0269d3779ff7b1 | p@chr1:11905799..11905806, - |
| 1.23e-66 | FFCP PHASE1:Hg19::chr14:23863067..23863074,+#_7cd48367c3aa61777f0269d3779ff7b1 | p@chr14:23863067..23863074, + |
| 1.23e-66 | FFCP PHASE1:Hg19::chr15:26640223..26640233,+#_7cd48367c3aa61777f0269d3779ff7b1 | p2@ENST00000451579 |
| 1.23e-66 | FFCP PHASE1:Hg19::chr1:11907265..11907271,-#_7cd48367c3aa61777f0269d3779ff7b1 | p9@NPPA |
| 1.23e-66 | FFCP PHASE2:Hg19::chr14:104315251..104315260,-#_7cd48367c3aa61777f0269d3779ff7b1 | p@chr14:104315251..104315260, - |
| 1.23e-66 | FFCP PHASE2:Hg19::chr1:11905915..11905921,-#_7cd48367c3aa61777f0269d3779ff7b1 | p@chr1:11905915..11905921, - |
| 1.23e-66 | FFCP PHASE2:Hg19::chr2:69098566..69098571,-#_7cd48367c3aa61777f0269d3779ff7b1 | p3@BMP10 |
| 1.23e-66 | FFCP PHASE2:Hg19::chr12:114886422..114886429,-#_7cd48367c3aa61777f0269d3779ff7b1 | p@chr12:114886422..114886429, - |
| 1.23e-66 | FFCP PHASE1:Hg19::chr15:77964143..77964150,-#_7cd48367c3aa61777f0269d3779ff7b1 | p@chr15:77964143..77964150, - |
| 1.23e-66 | FFCP PHASE2:Hg19::chr5:172671810..172671816,-#_7cd48367c3aa61777f0269d3779ff7b1 | p@chr5:172671810..172671816, - |
| 1.23e-66 | FFCP PHASE1:Hg19::chr14:23863078..23863082,+#_7cd48367c3aa61777f0269d3779ff7b1 | p@chr14:23863078..23863082, + |
| 1.23e-66 | FFCP PHASE2:Hg19::chr1:11907395..11907410,-#_7cd48367c3aa61777f0269d3779ff7b1 | p4@NPPA |
| 1.23e-66 | FFCP PHASE2:Hg19::chr4:65366184..65366190,-#_7cd48367c3aa61777f0269d3779ff7b1 | p@chr4:65366184..65366190, - |
| 1.23e-66 | FFCP PHASE2:Hg19::chr18:21906552..21906584,+#_7cd48367c3aa61777f0269d3779ff7b1 | p@chr18:21906552..21906584, + |
| 1.23e-66 | FFCP PHASE1:Hg19::chr12:70004575..70004590,-#_7cd48367c3aa61777f0269d3779ff7b1 | p4@LRRC10 |
| 1.23e-66 | FFCP PHASE1:Hg19::chr1:11905915..11905921,-#_7cd48367c3aa61777f0269d3779ff7b1 | p@chr1:11905915..11905921, - |
| 1.23e-66 | FFCP PHASE1:Hg19::chr15:44172096..44172101,-#_7cd48367c3aa61777f0269d3779ff7b1 | p@chr15:44172096..44172101, - |
| 1.23e-66 | FFCP PHASE2:Hg19::chr14:23863067..23863074,+#_7cd48367c3aa61777f0269d3779ff7b1 | p@chr14:23863067..23863074, + |
| 1.23e-66 | FFCP PHASE1:Hg19::chr2:69098566..69098571,-#_7cd48367c3aa61777f0269d3779ff7b1 | p3@BMP10 |
| 1.23e-66 | FFCP PHASE2:Hg19::chr15:26640223..26640233,+#_7cd48367c3aa61777f0269d3779ff7b1 | p2@ENST00000451579 |
| 1.23e-66 | FFCP PHASE1:Hg19::chr5:172671810..172671816,-#_7cd48367c3aa61777f0269d3779ff7b1 | p@chr5:172671810..172671816, - |
| 1.23e-66 | FFCP PHASE1:Hg19::chr1:11907395..11907410,-#_7cd48367c3aa61777f0269d3779ff7b1 | p4@NPPA |
| 1.23e-66 | FFCP PHASE1:Hg19::chr18:21906552..21906584,+#_7cd48367c3aa61777f0269d3779ff7b1 | p@chr18:21906552..21906584, + |
| 1.23e-66 | FFCP PHASE2:Hg19::chr7:145378479..145378484,-#_7cd48367c3aa61777f0269d3779ff7b1 | p1@ENST00000422084 |
| 1.23e-66 | FFCP PHASE2:Hg19::chr15:77964143..77964150,-#_7cd48367c3aa61777f0269d3779ff7b1 | p@chr15:77964143..77964150, - |
| 1.23e-66 | FFCP PHASE2:Hg19::chr12:70004575..70004590,-#_7cd48367c3aa61777f0269d3779ff7b1 | p4@LRRC10 |
| 1.23e-66 | FFCP PHASE2:Hg19::chr14:23863078..23863082,+#_7cd48367c3aa61777f0269d3779ff7b1 | p@chr14:23863078..23863082, + |
| 1.23e-66 | FFCP PHASE1:Hg19::chr4:65366184..65366190,-#_7cd48367c3aa61777f0269d3779ff7b1 | p@chr4:65366184..65366190, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr6:3912296..3912301,-#_442689cc6837e7b894f8d67175d9ea04 | p4@BX647262 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr2:220492830..220492865,+#_442689cc6837e7b894f8d67175d9ea04 | p16@SLC4A3 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr10:97182338..97182349,-#_442689cc6837e7b894f8d67175d9ea04 | p@chr10:97182338..97182349, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr5:160729887..160729898,+#_442689cc6837e7b894f8d67175d9ea04 | p@chr5:160729887..160729898, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr12:117491808..117491811,-#_442689cc6837e7b894f8d67175d9ea04 | p6@TESC |
| 2.39e-66 | FFCP PHASE2:Hg19::chr20:55732283..55732288,-#_442689cc6837e7b894f8d67175d9ea04 | p@chr20:55732283..55732288, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr2:101728712..101728734,+#_442689cc6837e7b894f8d67175d9ea04 | p@chr2:101728712..101728734, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr11:19231405..19231414,+#_442689cc6837e7b894f8d67175d9ea04 | p@chr11:19231405..19231414, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr12:94073515..94073534,+#_442689cc6837e7b894f8d67175d9ea04 | p@chr12:94073515..94073534, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr5:160729887..160729898,+#_442689cc6837e7b894f8d67175d9ea04 | p@chr5:160729887..160729898, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr2:101728712..101728734,+#_442689cc6837e7b894f8d67175d9ea04 | p@chr2:101728712..101728734, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr10:97182338..97182349,-#_442689cc6837e7b894f8d67175d9ea04 | p@chr10:97182338..97182349, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr20:55732283..55732288,-#_442689cc6837e7b894f8d67175d9ea04 | p@chr20:55732283..55732288, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr12:114841717..114841726,-#_442689cc6837e7b894f8d67175d9ea04 | p15@TBX5 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr11:19231405..19231414,+#_442689cc6837e7b894f8d67175d9ea04 | p@chr11:19231405..19231414, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr2:163978183..163978189,+#_442689cc6837e7b894f8d67175d9ea04 | p@chr2:163978183..163978189, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr15:99383378..99383380,-#_442689cc6837e7b894f8d67175d9ea04 | p@chr15:99383378..99383380, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr3:119379472..119379475,-#_442689cc6837e7b894f8d67175d9ea04 | p6@POPDC2 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr12:3157390..3157430,+#_442689cc6837e7b894f8d67175d9ea04 | p@chr12:3157390..3157430, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr12:114841717..114841726,-#_442689cc6837e7b894f8d67175d9ea04 | p15@TBX5 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr1:78383264..78383274,+#_442689cc6837e7b894f8d67175d9ea04 | p31@NEXN |
| 2.39e-66 | FFCP PHASE2:Hg19::chr6:3912296..3912301,-#_442689cc6837e7b894f8d67175d9ea04 | p4@BX647262 |
