UBERON:0004821: Difference between revisions
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|located_in= | |located_in= | ||
|name=pulmonary alveolus epithelium | |name=pulmonary alveolus epithelium | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0002299;;UBERON:0004894 | |part_of=UBERON:0002299;;UBERON:0004894 | ||
Latest revision as of 17:48, 12 September 2014
| Name: | pulmonary alveolus epithelium | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "the epithelial layer of the alveoli[MP]. The layer of cells covering the lining of the tiny air sacs at the end of the bronchioles[BTO]." [BTO:0003511, MP:0010898] | ||
| Xrefs: |
| ||
| Synonyms: |
"alveolus epithelial tissue" EXACT [OBOL:automatic] "alveolus epithelium" EXACT [MA:0001771] "epithelial tissue of alveolus" EXACT [OBOL:automatic] "epithelium of alveolus" EXACT [OBOL:automatic] "pulmonary alveolar epithelium" EXACT [FMA:63915] "pulmonary alveolus epithelium" EXACT [MP:0010898] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000115(lung epithelium),UBERON:0000487(simple squamous epithelium) |
|---|---|
| part_of: | UBERON:0002299(alveolus of lung),UBERON:0004894(alveolar wall) |
Children
| derives from: | FF:0102060 (bronchioalveolar carcinoma cell sample) |
|---|---|
| part of: | CL:0000322 (pneumocyte) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10708-109H6 (alveolar cell carcinoma cell line:SW 1573)
- 10709-109H7 (bronchioalveolar carcinoma cell line:NCI-H358)
- 10715-109I4 (bronchioalveolar carcinoma cell line:NCI-H650)
- 11510-119G7 (Alveolar Epithelial Cells, donor1)
- 11671-122G6 (Alveolar Epithelial Cells, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004821 (pulmonary alveolus epithelium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.39e-66 | FFCP PHASE2:Hg19::chr7:63539651..63539654,+#_cb14ad40d5e2d830ba27818ee2fc5b35 | p1@ENST00000430271 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr10:101691056..101691064,-#_cb14ad40d5e2d830ba27818ee2fc5b35 | p13@DNMBP |
| 2.39e-66 | FFCP PHASE2:Hg19::chr20:2779140..2779150,-#_cb14ad40d5e2d830ba27818ee2fc5b35 | p9@CPXM1 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr7:63539651..63539654,+#_cb14ad40d5e2d830ba27818ee2fc5b35 | p1@ENST00000430271 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr10:101691056..101691064,-#_cb14ad40d5e2d830ba27818ee2fc5b35 | p13@DNMBP |
| 2.39e-66 | FFCP PHASE1:Hg19::chr20:2779199..2779205,-#_cb14ad40d5e2d830ba27818ee2fc5b35 | p13@CPXM1 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr20:2779199..2779205,-#_cb14ad40d5e2d830ba27818ee2fc5b35 | p13@CPXM1 |
| 2.39e-66 | FFCP PHASE1:Hg19::chrX:48056224..48056233,-#_cb14ad40d5e2d830ba27818ee2fc5b35 | p1@SSX5 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr20:2779236..2779242,-#_cb14ad40d5e2d830ba27818ee2fc5b35 | p12@CPXM1 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr20:2779236..2779242,-#_cb14ad40d5e2d830ba27818ee2fc5b35 | p12@CPXM1 |
| 2.39e-66 | FFCP PHASE2:Hg19::chrX:48056224..48056233,-#_cb14ad40d5e2d830ba27818ee2fc5b35 | p1@SSX5 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr17:63511856..63511858,-#_cb14ad40d5e2d830ba27818ee2fc5b35 | p@chr17:63511856..63511858, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr17:13574618..13574636,-#_cb14ad40d5e2d830ba27818ee2fc5b35 | p@chr17:13574618..13574636, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr17:63511856..63511858,-#_cb14ad40d5e2d830ba27818ee2fc5b35 | p@chr17:63511856..63511858, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr14:36536932..36536937,-#_cb14ad40d5e2d830ba27818ee2fc5b35 | p@chr14:36536932..36536937, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr20:2779313..2779314,-#_cb14ad40d5e2d830ba27818ee2fc5b35 | p16@CPXM1 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr17:13574618..13574636,-#_cb14ad40d5e2d830ba27818ee2fc5b35 | p@chr17:13574618..13574636, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr20:2779313..2779314,-#_cb14ad40d5e2d830ba27818ee2fc5b35 | p16@CPXM1 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr14:36536932..36536937,-#_cb14ad40d5e2d830ba27818ee2fc5b35 | p@chr14:36536932..36536937, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr6:137314390..137314394,-#_cb14ad40d5e2d830ba27818ee2fc5b35 | p1@ENST00000418699, p1@ENST00000432330 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr3:87647430..87647437,-#_cb14ad40d5e2d830ba27818ee2fc5b35 | p@chr3:87647430..87647437, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr16:11118533..11118538,+#_cb14ad40d5e2d830ba27818ee2fc5b35 | p12@CLEC16A |
| 2.39e-66 | FFCP PHASE2:Hg19::chr10:101690855..101690861,-#_cb14ad40d5e2d830ba27818ee2fc5b35 | p14@DNMBP |
| 2.39e-66 | FFCP PHASE2:Hg19::chr6:137314390..137314394,-#_cb14ad40d5e2d830ba27818ee2fc5b35 | p1@ENST00000418699, p1@ENST00000432330 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr10:101690855..101690861,-#_cb14ad40d5e2d830ba27818ee2fc5b35 | p14@DNMBP |
| 2.39e-66 | FFCP PHASE2:Hg19::chr3:87647430..87647437,-#_cb14ad40d5e2d830ba27818ee2fc5b35 | p@chr3:87647430..87647437, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr16:11118533..11118538,+#_cb14ad40d5e2d830ba27818ee2fc5b35 | p12@CLEC16A |
| 2.39e-66 | FFCP PHASE1:Hg19::chr20:2779140..2779150,-#_cb14ad40d5e2d830ba27818ee2fc5b35 | p9@CPXM1 |
| 1.53e-44 | FFCP PHASE2:Hg19::chr2:191696381..191696384,-#_8680a7fd5a5a3746947ba135da3e4d84 | p@chr2:191696381..191696384, - |
| 1.53e-44 | FFCP PHASE1:Hg19::chr2:191696381..191696384,-#_8680a7fd5a5a3746947ba135da3e4d84 | p@chr2:191696381..191696384, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr4:169956294..169956301,-#_462031bf5fbe41c7d8a09765460155f6 | p@chr4:169956294..169956301, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr8:122157279..122157284,-#_462031bf5fbe41c7d8a09765460155f6 | p@chr8:122157279..122157284, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr4:169956294..169956301,-#_462031bf5fbe41c7d8a09765460155f6 | p@chr4:169956294..169956301, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chrX:147062891..147062896,+#_462031bf5fbe41c7d8a09765460155f6 | p3@FMR1NB |
| 4.27e-34 | FFCP PHASE2:Hg19::chrX:147062891..147062896,+#_462031bf5fbe41c7d8a09765460155f6 | p3@FMR1NB |
| 4.27e-34 | FFCP PHASE2:Hg19::chr8:94870047..94870056,+#_462031bf5fbe41c7d8a09765460155f6 | p30@PDP1 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr8:94870047..94870056,+#_462031bf5fbe41c7d8a09765460155f6 | p30@PDP1 |
| 4.27e-34 | FFCP PHASE2:Hg19::chr11:104005546..104005596,-#_462031bf5fbe41c7d8a09765460155f6 | p@chr11:104005546..104005596, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr10:101691101..101691115,-#_462031bf5fbe41c7d8a09765460155f6 | p7@DNMBP |
| 4.27e-34 | FFCP PHASE1:Hg19::chr11:104005546..104005596,-#_462031bf5fbe41c7d8a09765460155f6 | p@chr11:104005546..104005596, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr9:103785643..103785646,-#_462031bf5fbe41c7d8a09765460155f6 | p@chr9:103785643..103785646, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr10:101691101..101691115,-#_462031bf5fbe41c7d8a09765460155f6 | p7@DNMBP |
| 4.27e-34 | FFCP PHASE2:Hg19::chr11:41809203..41809208,-#_462031bf5fbe41c7d8a09765460155f6 | p@chr11:41809203..41809208, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr9:103785643..103785646,-#_462031bf5fbe41c7d8a09765460155f6 | p@chr9:103785643..103785646, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr11:106266838..106266843,+#_462031bf5fbe41c7d8a09765460155f6 | p@chr11:106266838..106266843, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr11:41809203..41809208,-#_462031bf5fbe41c7d8a09765460155f6 | p@chr11:41809203..41809208, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr11:106266838..106266843,+#_462031bf5fbe41c7d8a09765460155f6 | p@chr11:106266838..106266843, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr9:140350189..140350212,-#_462031bf5fbe41c7d8a09765460155f6 | p30@NELF |
| 4.27e-34 | FFCP PHASE2:Hg19::chr9:140350189..140350212,-#_462031bf5fbe41c7d8a09765460155f6 | p30@NELF |
| 4.27e-34 | FFCP PHASE2:Hg19::chr10:101691199..101691208,-#_462031bf5fbe41c7d8a09765460155f6 | p11@DNMBP |
| 4.27e-34 | FFCP PHASE2:Hg19::chr8:122157279..122157284,-#_462031bf5fbe41c7d8a09765460155f6 | p@chr8:122157279..122157284, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr10:101691199..101691208,-#_462031bf5fbe41c7d8a09765460155f6 | p11@DNMBP |
| 5.96e-34 | FFCP PHASE2:Hg19::chr6:45399533..45399540,+#_0bcc5e51b0fea80a33c7281fa81290da | p@chr6:45399533..45399540, + |
| 5.96e-34 | FFCP PHASE1:Hg19::chr3:139035972..139036016,-#_0bcc5e51b0fea80a33c7281fa81290da | p@chr3:139035972..139036016, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr6:45399245..45399258,+#_0bcc5e51b0fea80a33c7281fa81290da | p@chr6:45399245..45399258, + |
| 5.96e-34 | FFCP PHASE1:Hg19::chr20:2795718..2795731,+#_0bcc5e51b0fea80a33c7281fa81290da | p5@C20orf141 |
| 5.96e-34 | FFCP PHASE2:Hg19::chr6:45399245..45399258,+#_0bcc5e51b0fea80a33c7281fa81290da | p@chr6:45399245..45399258, + |
| 5.96e-34 | FFCP PHASE2:Hg19::chr20:2795718..2795731,+#_0bcc5e51b0fea80a33c7281fa81290da | p5@C20orf141 |
| 5.96e-34 | FFCP PHASE1:Hg19::chr15:55806847..55806854,-#_0bcc5e51b0fea80a33c7281fa81290da | p@chr15:55806847..55806854, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr4:171012844..171012850,-#_0bcc5e51b0fea80a33c7281fa81290da | p12@AADAT |
| 5.96e-34 | FFCP PHASE1:Hg19::chr6:46985426..46985427,-#_0bcc5e51b0fea80a33c7281fa81290da | p@chr6:46985426..46985427, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr6:45399263..45399274,+#_0bcc5e51b0fea80a33c7281fa81290da | p@chr6:45399263..45399274, + |
| 5.96e-34 | FFCP PHASE2:Hg19::chr15:55806847..55806854,-#_0bcc5e51b0fea80a33c7281fa81290da | p@chr15:55806847..55806854, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr12:65386452..65386492,-#_0bcc5e51b0fea80a33c7281fa81290da | p@chr12:65386452..65386492, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr6:169691363..169691375,-#_0bcc5e51b0fea80a33c7281fa81290da | p@chr6:169691363..169691375, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr9:140349856..140349859,-#_0bcc5e51b0fea80a33c7281fa81290da | p36@NELF |
| 5.96e-34 | FFCP PHASE2:Hg19::chr6:46985426..46985427,-#_0bcc5e51b0fea80a33c7281fa81290da | p@chr6:46985426..46985427, - |
| 5.96e-34 | FFCP PHASE2:Hg19::chr4:171012844..171012850,-#_0bcc5e51b0fea80a33c7281fa81290da | p12@AADAT |
| 5.96e-34 | FFCP PHASE2:Hg19::chr6:45399263..45399274,+#_0bcc5e51b0fea80a33c7281fa81290da | p@chr6:45399263..45399274, + |
| 5.96e-34 | FFCP PHASE2:Hg19::chr12:65386452..65386492,-#_0bcc5e51b0fea80a33c7281fa81290da | p@chr12:65386452..65386492, - |
| 5.96e-34 | FFCP PHASE2:Hg19::chr6:169691363..169691375,-#_0bcc5e51b0fea80a33c7281fa81290da | p@chr6:169691363..169691375, - |
| 5.96e-34 | FFCP PHASE2:Hg19::chr9:140349856..140349859,-#_0bcc5e51b0fea80a33c7281fa81290da | p36@NELF |
| 5.96e-34 | FFCP PHASE1:Hg19::chr6:141743015..141743025,+#_0bcc5e51b0fea80a33c7281fa81290da | p@chr6:141743015..141743025, + |
| 5.96e-34 | FFCP PHASE1:Hg19::chr6:45399294..45399301,+#_0bcc5e51b0fea80a33c7281fa81290da | p@chr6:45399294..45399301, + |
| 5.96e-34 | FFCP PHASE2:Hg19::chr6:141743015..141743025,+#_0bcc5e51b0fea80a33c7281fa81290da | p@chr6:141743015..141743025, + |
| 5.96e-34 | FFCP PHASE1:Hg19::chr9:140349915..140349924,-#_0bcc5e51b0fea80a33c7281fa81290da | p34@NELF |
| 5.96e-34 | FFCP PHASE2:Hg19::chr6:45399294..45399301,+#_0bcc5e51b0fea80a33c7281fa81290da | p@chr6:45399294..45399301, + |
| 5.96e-34 | FFCP PHASE1:Hg19::chr1:119837700..119837705,+#_0bcc5e51b0fea80a33c7281fa81290da | p@chr1:119837700..119837705, + |
| 5.96e-34 | FFCP PHASE1:Hg19::chr1:93054640..93054674,-#_0bcc5e51b0fea80a33c7281fa81290da | p@chr1:93054640..93054674, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr6:45405332..45405343,+#_0bcc5e51b0fea80a33c7281fa81290da | p@chr6:45405332..45405343, + |
| 5.96e-34 | FFCP PHASE2:Hg19::chr9:140349915..140349924,-#_0bcc5e51b0fea80a33c7281fa81290da | p34@NELF |
| 5.96e-34 | FFCP PHASE2:Hg19::chr6:45405332..45405343,+#_0bcc5e51b0fea80a33c7281fa81290da | p@chr6:45405332..45405343, + |
| 5.96e-34 | FFCP PHASE2:Hg19::chr1:119837700..119837705,+#_0bcc5e51b0fea80a33c7281fa81290da | p@chr1:119837700..119837705, + |
| 5.96e-34 | FFCP PHASE2:Hg19::chr1:93054640..93054674,-#_0bcc5e51b0fea80a33c7281fa81290da | p@chr1:93054640..93054674, - |
| 5.96e-34 | FFCP PHASE2:Hg19::chr17:63533845..63533851,-#_0bcc5e51b0fea80a33c7281fa81290da | p@chr17:63533845..63533851, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr2:118846114..118846125,+#_0bcc5e51b0fea80a33c7281fa81290da | p6@INSIG2 |
| 5.96e-34 | FFCP PHASE1:Hg19::chr6:45405393..45405412,+#_0bcc5e51b0fea80a33c7281fa81290da | p@chr6:45405393..45405412, + |
| 5.96e-34 | FFCP PHASE1:Hg19::chr17:63533845..63533851,-#_0bcc5e51b0fea80a33c7281fa81290da | p@chr17:63533845..63533851, - |
| 5.96e-34 | FFCP PHASE2:Hg19::chr2:118846114..118846125,+#_0bcc5e51b0fea80a33c7281fa81290da | p6@INSIG2 |
| 5.96e-34 | FFCP PHASE2:Hg19::chr6:45405393..45405412,+#_0bcc5e51b0fea80a33c7281fa81290da | p@chr6:45405393..45405412, + |
| 5.96e-34 | FFCP PHASE1:Hg19::chr6:45399533..45399540,+#_0bcc5e51b0fea80a33c7281fa81290da | p@chr6:45399533..45399540, + |
| 5.96e-34 | FFCP PHASE2:Hg19::chr3:139035972..139036016,-#_0bcc5e51b0fea80a33c7281fa81290da | p@chr3:139035972..139036016, - |
| 1.71e-30 | FFCP PHASE2:Hg19::chr2:75751179..75751194,+#_e39e68a690a7b2e8c228953a340643b5 | p1@BC018659 |
| 1.71e-30 | FFCP PHASE1:Hg19::chr2:75751179..75751194,+#_e39e68a690a7b2e8c228953a340643b5 | p1@BC018659 |
| 1.59e-27 | FFCP PHASE1:Hg19::chr14:29047235..29047244,+#_9f9f00b15aed320f8a35df6eec2f171c | p@chr14:29047235..29047244, + |
| 1.59e-27 | FFCP PHASE2:Hg19::chr14:29047235..29047244,+#_9f9f00b15aed320f8a35df6eec2f171c | p@chr14:29047235..29047244, + |
| 3.56e-27 | FFCP PHASE2:Hg19::chr17:171082..171101,+#_59fcbd933f4dd12753b3028f44dd0956 | p@chr17:171082..171101, + |
| 3.56e-27 | FFCP PHASE1:Hg19::chr17:171082..171101,+#_59fcbd933f4dd12753b3028f44dd0956 | p@chr17:171082..171101, + |
| 7.93e-25 | FFCP PHASE2:Hg19::chr7:27163592..27163605,-#_d8d2ecc3d8c72e0ee70c77991d4c9dc6 | p@chr7:27163592..27163605, - |
| 7.93e-25 | FFCP PHASE1:Hg19::chr7:27163592..27163605,-#_d8d2ecc3d8c72e0ee70c77991d4c9dc6 | p@chr7:27163592..27163605, - |
