UBERON:0010230: Difference between revisions
From FANTOM5_SSTAR
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|located_in= | |located_in= | ||
|name=eyeball of camera-type eye | |name=eyeball of camera-type eye | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000019 | |part_of=UBERON:0000019 | ||
Latest revision as of 18:08, 12 September 2014
| Name: | eyeball of camera-type eye | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "The camera-type eye apart from its appendages/adnexa." [Wikipedia:Globe_(human_eye)] | ||
| Xrefs: |
| ||
| Synonyms: |
"bulbus oculi" EXACT [] "eye" RELATED INCONSISTENT [] "eyeball" EXACT [FMA:12513] "globe" RELATED [HP:0100886, MIAA:0000283] | ||
| Comments: | See notes for camera-type eye |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000020(sense organ),UBERON:0004121(ectoderm-derived structure) |
|---|---|
| part_of: | UBERON:0000019(camera-type eye) |
Children
| derives from: | FF:0011252 (mouse eyeball- neonate N01 sample),FF:0011264 (mouse eyeball- neonate N00 sample),FF:0011281 (mouse eyeball- neonate N02 sample),FF:0011309 (mouse eyeball- adult sample),FF:0011316 (mouse eyeball- embryo E12 sample),FF:0011335 (mouse eyeball- embryo E14 sample),FF:0011344 (mouse eyeball- embryo E15 sample),FF:0011423 (mouse eyeball- neonate N16 sample),FF:0011521 (mouse eyeball- embryo E17 sample) |
|---|---|
| part of: | UBERON:0001801 (anterior segment of eyeball),UBERON:0001802 (posterior segment of eyeball),UBERON:0012430 (tunica fibrosa of eyeball) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10030-101E3 (retina, adult, pool1)
- 10268-104D7 (eye - vitreous humor, donor1)
- 10296-104G8
- 10324-105A9
- 10440-106E8
- 10475-106I7 (retinoblastoma cell line:Y79)
- 10647-109A8 (lens epithelial cell line:SRA 01/04)
- 10671-109D5
- 10672-109D6
- 10673-109D7
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010230 (eyeball of camera-type eye), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 7.96e-70 | FFCP PHASE1:Hg19::chr2:45169233..45169244,+#_9ddbfc1e6995fa808800012abd51d2e4 | p10@SIX3 |
| 7.96e-70 | FFCP PHASE2:Hg19::chr2:45169233..45169244,+#_9ddbfc1e6995fa808800012abd51d2e4 | p10@SIX3 |
| 7.68e-69 | FFCP PHASE1:Hg19::chr8:53853672..53853682,-#_7b7ec63e6e554a2c56b3090cfea57658 | p1@BC033145 |
| 7.68e-69 | FFCP PHASE2:Hg19::chr8:53853672..53853682,-#_7b7ec63e6e554a2c56b3090cfea57658 | p1@BC033145 |
| 3.68e-57 | FFCP PHASE1:Hg19::chr14:87636652..87636657,-#_014581427ef74fe0ed45cb40c9e02fe6 | p@chr14:87636652..87636657, - |
| 3.68e-57 | FFCP PHASE2:Hg19::chr14:87636652..87636657,-#_014581427ef74fe0ed45cb40c9e02fe6 | p@chr14:87636652..87636657, - |
| 7.11e-57 | FFCP PHASE1:Hg19::chr2:45168617..45168631,-#_b30e595a1aaaafc729c036c36a009fa3 | p1@ENST00000456467 |
| 7.11e-57 | FFCP PHASE2:Hg19::chr2:45168617..45168631,-#_b30e595a1aaaafc729c036c36a009fa3 | p1@ENST00000456467 |
| 1.55e-56 | FFCP PHASE2:Hg19::chr1:26498321..26498327,-#_7b348f28d7f02318d53981e2e6975d6b | p1@ENST00000448923 |
| 1.55e-56 | FFCP PHASE1:Hg19::chr1:26498321..26498327,-#_7b348f28d7f02318d53981e2e6975d6b | p1@ENST00000448923 |
| 1.88e-56 | FFCP PHASE1:Hg19::chr2:45169172..45169177,+#_290aaba5d088c86ec53445bcdb71e047 | p11@SIX3 |
| 1.88e-56 | FFCP PHASE2:Hg19::chr2:45169172..45169177,+#_290aaba5d088c86ec53445bcdb71e047 | p11@SIX3 |
| 1.02e-52 | FFCP PHASE2:Hg19::chr2:45162900..45162914,-#_356b69d7c68127b60ea38d5fa14dab58 | p1@ENST00000432125 |
| 1.02e-52 | FFCP PHASE1:Hg19::chr2:45162900..45162914,-#_356b69d7c68127b60ea38d5fa14dab58 | p1@ENST00000432125 |
| 2.0e-52 | FFCP PHASE1:Hg19::chr1:29586692..29586705,+#_d1b9af330c5c2766a08151282cc8cc55 | p7@PTPRU |
| 2.0e-52 | FFCP PHASE2:Hg19::chr1:29586692..29586705,+#_d1b9af330c5c2766a08151282cc8cc55 | p7@PTPRU |
| 1.16e-49 | FFCP PHASE2:Hg19::chr7:115723925..115723935,-#_de03571e2604820936e0d21f719600f3 | p@chr7:115723925..115723935, - |
| 1.16e-49 | FFCP PHASE1:Hg19::chr7:115723925..115723935,-#_de03571e2604820936e0d21f719600f3 | p@chr7:115723925..115723935, - |
| 4.83e-49 | FFCP PHASE1:Hg19::chr2:45169179..45169190,+#_0a4b829317c16aa144d1bec36266c211 | p8@SIX3 |
| 4.83e-49 | FFCP PHASE2:Hg19::chr2:45169179..45169190,+#_0a4b829317c16aa144d1bec36266c211 | p8@SIX3 |
| 6.21e-49 | FFCP PHASE1:Hg19::chr18:56940663..56940691,-#_13ce65970e4ebdb7903508eac7bd9c2d | p2@RAX |
| 6.21e-49 | FFCP PHASE2:Hg19::chr18:56940663..56940691,-#_13ce65970e4ebdb7903508eac7bd9c2d | p2@RAX |
| 2.35e-48 | FFCP PHASE1:Hg19::chr2:45165994..45166012,-#_44b7b33ca305c097b4ee8a55f6bcea85 | p1@ENST00000444871 |
| 2.35e-48 | FFCP PHASE2:Hg19::chr2:45165994..45166012,-#_44b7b33ca305c097b4ee8a55f6bcea85 | p1@ENST00000444871 |
| 3.15e-48 | FFCP PHASE2:Hg19::chr14:60975644..60975673,+#_6dee04c66f5d55e824ccfa2c60e08051 | p3@SIX6 |
| 3.15e-48 | FFCP PHASE1:Hg19::chr14:60975644..60975673,+#_6dee04c66f5d55e824ccfa2c60e08051 | p3@SIX6 |
| 6.51e-47 | FFCP PHASE1:Hg19::chr2:45168856..45168867,+#_37a0024d7fee20b12d66e1e5fa694290 | p7@SIX3 |
| 6.51e-47 | FFCP PHASE2:Hg19::chr2:45168856..45168867,+#_37a0024d7fee20b12d66e1e5fa694290 | p7@SIX3 |
| 4.73e-46 | FFCP PHASE1:Hg19::chr14:60975858..60975869,+#_313247baac7d9c2805710daa4a00204b | p2@SIX6 |
| 4.73e-46 | FFCP PHASE2:Hg19::chr14:60975858..60975869,+#_313247baac7d9c2805710daa4a00204b | p2@SIX6 |
| 4.7e-45 | FFCP PHASE2:Hg19::chr2:45166504..45166533,-#_f1c04c2619b4e74ce9ee357502871628 | p2@ENST00000437916 |
| 4.7e-45 | FFCP PHASE1:Hg19::chr2:45166504..45166533,-#_f1c04c2619b4e74ce9ee357502871628 | p2@ENST00000437916 |
| 8.95e-44 | FFCP PHASE1:Hg19::chr11:31827535..31827565,-#_201278da04654fe93f0a4f703fc8d1a0 | p11@PAX6 |
| 8.95e-44 | FFCP PHASE2:Hg19::chr11:31827535..31827565,-#_201278da04654fe93f0a4f703fc8d1a0 | p11@PAX6 |
| 4.79e-42 | FFCP PHASE1:Hg19::chr8:99076582..99076599,+#_6c854e2e5ac0dcc7c95f15b40b45dd3b | p6@C8orf47 |
| 4.79e-42 | FFCP PHASE2:Hg19::chr8:99076582..99076599,+#_6c854e2e5ac0dcc7c95f15b40b45dd3b | p6@C8orf47 |
| 1.93e-41 | FFCP PHASE1:Hg19::chr9:73483992..73484003,-#_b99abc381b121ef641b507f4bd301279 | p6@TRPM3 |
| 1.93e-41 | FFCP PHASE2:Hg19::chr9:73483992..73484003,-#_b99abc381b121ef641b507f4bd301279 | p6@TRPM3 |
| 2.19e-41 | FFCP PHASE1:Hg19::chr14:60975883..60975911,+#_dcb0e2fd97c93c03afb9b178a913b7f5 | p1@SIX6 |
| 2.19e-41 | FFCP PHASE2:Hg19::chr14:60975883..60975911,+#_dcb0e2fd97c93c03afb9b178a913b7f5 | p1@SIX6 |
| 4.28e-40 | FFCP PHASE2:Hg19::chr12:97856211..97856221,+#_d3b5609c236b2a7388a18f54b52f557f | p@chr12:97856211..97856221, + |
| 4.28e-40 | FFCP PHASE1:Hg19::chr13:51913806..51913817,+#_d3b5609c236b2a7388a18f54b52f557f | p2@SERPINE3 |
| 4.28e-40 | FFCP PHASE2:Hg19::chr13:99135322..99135327,-#_d3b5609c236b2a7388a18f54b52f557f | p@chr13:99135322..99135327, - |
| 4.28e-40 | FFCP PHASE1:Hg19::chr8:53853688..53853698,-#_d3b5609c236b2a7388a18f54b52f557f | p3@BC033145 |
| 4.28e-40 | FFCP PHASE2:Hg19::chr8:53853688..53853698,-#_d3b5609c236b2a7388a18f54b52f557f | p3@BC033145 |
| 4.28e-40 | FFCP PHASE1:Hg19::chr2:45166428..45166437,-#_d3b5609c236b2a7388a18f54b52f557f | p4@ENST00000437916 |
| 4.28e-40 | FFCP PHASE1:Hg19::chr7:115723897..115723915,-#_d3b5609c236b2a7388a18f54b52f557f | p@chr7:115723897..115723915, - |
| 4.28e-40 | FFCP PHASE2:Hg19::chr2:45166428..45166437,-#_d3b5609c236b2a7388a18f54b52f557f | p4@ENST00000437916 |
| 4.28e-40 | FFCP PHASE2:Hg19::chr7:115723897..115723915,-#_d3b5609c236b2a7388a18f54b52f557f | p@chr7:115723897..115723915, - |
| 4.28e-40 | FFCP PHASE1:Hg19::chr13:99135322..99135327,-#_d3b5609c236b2a7388a18f54b52f557f | p@chr13:99135322..99135327, - |
| 4.28e-40 | FFCP PHASE2:Hg19::chr13:51913806..51913817,+#_d3b5609c236b2a7388a18f54b52f557f | p2@SERPINE3 |
| 4.28e-40 | FFCP PHASE1:Hg19::chr12:97856211..97856221,+#_d3b5609c236b2a7388a18f54b52f557f | p@chr12:97856211..97856221, + |
| 2.36e-37 | FFCP PHASE1:Hg19::chr16:82068585..82068600,+#_e740358943ccac8700de4377cce7a63c | p8@HSD17B2 |
| 2.36e-37 | FFCP PHASE2:Hg19::chr16:82068585..82068600,+#_e740358943ccac8700de4377cce7a63c | p8@HSD17B2 |
| 4.32e-37 | FFCP PHASE1:Hg19::chr1:203463245..203463294,+#_75618fe87ba813b6503a0cacbabb3b0c | p1@OPTC |
| 4.32e-37 | FFCP PHASE2:Hg19::chr1:203463245..203463294,+#_75618fe87ba813b6503a0cacbabb3b0c | p1@OPTC |
| 6.3e-37 | FFCP PHASE2:Hg19::chr13:36050976..36050990,+#_cfd83c12b7caa2b08f7168517ab2540c | p8@NBEA |
| 6.3e-37 | FFCP PHASE1:Hg19::chr13:36050976..36050990,+#_cfd83c12b7caa2b08f7168517ab2540c | p8@NBEA |
| 6.29e-36 | FFCP PHASE1:Hg19::chr2:45171888..45171968,+#_a464d31d53ca24339911baaa3102d89e | p@chr2:45171888..45171968, + |
| 6.29e-36 | FFCP PHASE2:Hg19::chr2:45171888..45171968,+#_a464d31d53ca24339911baaa3102d89e | p@chr2:45171888..45171968, + |
| 1.4e-35 | FFCP PHASE1:Hg19::chr3:150690508..150690520,-#_c2420ba6272e79bfbf0190399598df9b | p1@CLRN1 |
| 1.4e-35 | FFCP PHASE2:Hg19::chr3:150690508..150690520,-#_c2420ba6272e79bfbf0190399598df9b | p1@CLRN1 |
| 6.96e-35 | FFCP PHASE1:Hg19::chr2:45168959..45168990,+#_499221087e99e03cd8a75ae7dd3c1c0a | p6@SIX3 |
| 6.96e-35 | FFCP PHASE2:Hg19::chr2:45168959..45168990,+#_499221087e99e03cd8a75ae7dd3c1c0a | p6@SIX3 |
| 2.7e-34 | FFCP PHASE1:Hg19::chr8:99076509..99076530,+#_8c6be0625606f8dcc537d8b18eb3ec02 | p4@C8orf47 |
| 2.7e-34 | FFCP PHASE2:Hg19::chr8:99076509..99076530,+#_8c6be0625606f8dcc537d8b18eb3ec02 | p4@C8orf47 |
| 8.68e-34 | FFCP PHASE1:Hg19::chr18:56940611..56940660,-#_ab8f104b65e60f6728cf073fa80f9198 | p1@RAX |
| 8.68e-34 | FFCP PHASE2:Hg19::chr18:56940611..56940660,-#_ab8f104b65e60f6728cf073fa80f9198 | p1@RAX |
| 1.5e-32 | FFCP PHASE1:Hg19::chr2:45169039..45169058,-#_f79ac93cee9bb0c6576292036f6e5458 | p1@ENST00000419364 |
| 1.5e-32 | FFCP PHASE2:Hg19::chr2:45169039..45169058,-#_f79ac93cee9bb0c6576292036f6e5458 | p1@ENST00000419364 |
| 2.39e-32 | FFCP PHASE2:Hg19::chr14:60975914..60975925,+#_8f4399d0cb1a0cd37c6afb7a65b40943 | p5@SIX6 |
| 2.39e-32 | FFCP PHASE1:Hg19::chr14:60975914..60975925,+#_8f4399d0cb1a0cd37c6afb7a65b40943 | p5@SIX6 |
| 3.13e-32 | FFCP PHASE1:Hg19::chr11:31671561..31671580,+#_b66457bb146cfd239ea61155ac69e45b | p@chr11:31671561..31671580, + |
| 3.13e-32 | FFCP PHASE2:Hg19::chr11:31671561..31671580,+#_b66457bb146cfd239ea61155ac69e45b | p@chr11:31671561..31671580, + |
| 3.13e-32 | FFCP PHASE1:Hg19::chr2:35680607..35680613,-#_b66457bb146cfd239ea61155ac69e45b | p@chr2:35680607..35680613, - |
| 3.13e-32 | FFCP PHASE2:Hg19::chr2:35680607..35680613,-#_b66457bb146cfd239ea61155ac69e45b | p@chr2:35680607..35680613, - |
| 3.13e-32 | FFCP PHASE1:Hg19::chr11:109990513..109990520,-#_b66457bb146cfd239ea61155ac69e45b | p@chr11:109990513..109990520, - |
| 3.13e-32 | FFCP PHASE2:Hg19::chr11:109990513..109990520,-#_b66457bb146cfd239ea61155ac69e45b | p@chr11:109990513..109990520, - |
| 3.67e-32 | FFCP PHASE1:Hg19::chr7:131803806..131803815,+#_a441bc18fc5abb614a137bf82c199f62 | p@chr7:131803806..131803815, + |
| 3.67e-32 | FFCP PHASE2:Hg19::chr7:131803806..131803815,+#_a441bc18fc5abb614a137bf82c199f62 | p@chr7:131803806..131803815, + |
| 3.98e-32 | FFCP PHASE1:Hg19::chr13:36052762..36052767,-#_16a624e0b80e633c2f8386f335e6e89a | p@chr13:36052762..36052767, - |
| 3.98e-32 | FFCP PHASE2:Hg19::chr13:36052762..36052767,-#_16a624e0b80e633c2f8386f335e6e89a | p@chr13:36052762..36052767, - |
| 4.08e-32 | FFCP PHASE1:Hg19::chr16:68301840..68301845,+#_2a5091f2b8609d226c3f195265c4e8fa | p@chr16:68301840..68301845, + |
| 4.08e-32 | FFCP PHASE2:Hg19::chr16:68301840..68301845,+#_2a5091f2b8609d226c3f195265c4e8fa | p@chr16:68301840..68301845, + |
| 4.31e-32 | FFCP PHASE2:Hg19::chr5:70308745..70308754,-#_87b5da4a8ab39b11b84a6eade1cd1d78 | p@chr5:70308745..70308754, - |
| 4.31e-32 | FFCP PHASE1:Hg19::chrX:106198807..106198826,-#_87b5da4a8ab39b11b84a6eade1cd1d78 | p@chrX:106198807..106198826, - |
| 4.31e-32 | FFCP PHASE1:Hg19::chr16:58896129..58896134,-#_87b5da4a8ab39b11b84a6eade1cd1d78 | p@chr16:58896129..58896134, - |
| 4.31e-32 | FFCP PHASE2:Hg19::chr16:58896129..58896134,-#_87b5da4a8ab39b11b84a6eade1cd1d78 | p@chr16:58896129..58896134, - |
| 4.31e-32 | FFCP PHASE2:Hg19::chrX:106198807..106198826,-#_87b5da4a8ab39b11b84a6eade1cd1d78 | p@chrX:106198807..106198826, - |
| 4.31e-32 | FFCP PHASE1:Hg19::chr5:70308745..70308754,-#_87b5da4a8ab39b11b84a6eade1cd1d78 | p@chr5:70308745..70308754, - |
| 5.39e-32 | FFCP PHASE1:Hg19::chr2:45166354..45166379,-#_2468d92c5ed4b6d63c3f101973e7454d | p1@ENST00000437916 |
| 5.39e-32 | FFCP PHASE2:Hg19::chr2:45166354..45166379,-#_2468d92c5ed4b6d63c3f101973e7454d | p1@ENST00000437916 |
| 7.83e-32 | FFCP PHASE1:Hg19::chr13:24190079..24190098,+#_f07b12aa8a1243df7c6f21dfb151f0a4 | p@chr13:24190079..24190098, + |
| 7.83e-32 | FFCP PHASE2:Hg19::chr13:24190079..24190098,+#_f07b12aa8a1243df7c6f21dfb151f0a4 | p@chr13:24190079..24190098, + |
| 2.77e-31 | FFCP PHASE1:Hg19::chr2:45166478..45166502,-#_4f753206c66aef215af6f2abba029500 | p3@ENST00000437916 |
| 2.77e-31 | FFCP PHASE2:Hg19::chr2:45166478..45166502,-#_4f753206c66aef215af6f2abba029500 | p3@ENST00000437916 |
| 3.02e-31 | FFCP PHASE2:Hg19::chr22:31536360..31536389,-#_b6ac236fa4e457cdb23b7d76f73f3458 | p4@PLA2G3 |
| 3.02e-31 | FFCP PHASE1:Hg19::chr22:31536360..31536389,-#_b6ac236fa4e457cdb23b7d76f73f3458 | p4@PLA2G3 |
| 4.86e-31 | FFCP PHASE1:Hg19::chr3:69928404..69928418,+#_afb04a2ec91c3218c7b6e8c7e0d121d0 | p@chr3:69928404..69928418, + |
| 4.86e-31 | FFCP PHASE2:Hg19::chr3:69928404..69928418,+#_afb04a2ec91c3218c7b6e8c7e0d121d0 | p@chr3:69928404..69928418, + |
