FF:10828-111C9: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005964 | |DRA_sample_Accession=CAGE@SAMD00005964 | ||
|accession_numbers=CAGE;DRX007802;DRR008674;DRZ000099;DRZ001484 | |accession_numbers=CAGE;DRX007802;DRR008674;DRZ000099;DRZ001484;DRZ011449;DRZ012834 | ||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255 | ||
Line 41: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M1%2529%2520cell%2520line%253aHYT-1.CNhs13054.10828-111C9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M1%2529%2520cell%2520line%253aHYT-1.CNhs13054.10828-111C9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M1%2529%2520cell%2520line%253aHYT-1.CNhs13054.10828-111C9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M1%2529%2520cell%2520line%253aHYT-1.CNhs13054.10828-111C9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M1%2529%2520cell%2520line%253aHYT-1.CNhs13054.10828-111C9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10828-111C9 | |id=FF:10828-111C9 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0101883 | |is_a=EFO:0002091;;FF:0000210;;FF:0101883 | ||
Line 46: | Line 51: | ||
|library_id=CNhs13054 | |library_id=CNhs13054 | ||
|library_id_phase_based=2:CNhs13054 | |library_id_phase_based=2:CNhs13054 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10828 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10828 | |||
|name=acute myeloid leukemia (FAB M1) cell line:HYT-1 | |name=acute myeloid leukemia (FAB M1) cell line:HYT-1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 53: | Line 62: | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.076655420403892,0,0,0,0,-0.00700718927860172,0.266395015964697,-0.0657118392649281,0.553520137176469,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0.395742097014724,0,0,0.330198852338113,0,0,0,0,0,0,0,0,0,0,0,0,-0.126612888968229,0.165886157503144,0,0,0,0,0,0,0,0.326214601685115,0,0,0,0.213523268164062,0,-0.0388251889215059,0,0.116530906921457,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213523268164062,0,0,0,0,0,0,0,0,0,0,-0.0703719563464448,0,0,0,0.0854359079322982,0.408970516607107,0.076655420403892,0,0.0416928196862171,0.0833856393724342,0.25799844492819,0.288327312303075,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0219746461676483,0.0833856393724342,0,0,-0.0702523362953709,-0.238250139713001,0,0,0.11146128891555,0,0,0 | |repeat_enrich_byfamily=0,0,0.076655420403892,0,0,0,0,-0.00700718927860172,0.266395015964697,-0.0657118392649281,0.553520137176469,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0.395742097014724,0,0,0.330198852338113,0,0,0,0,0,0,0,0,0,0,0,0,-0.126612888968229,0.165886157503144,0,0,0,0,0,0,0,0.326214601685115,0,0,0,0.213523268164062,0,-0.0388251889215059,0,0.116530906921457,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213523268164062,0,0,0,0,0,0,0,0,0,0,-0.0703719563464448,0,0,0,0.0854359079322982,0.408970516607107,0.076655420403892,0,0.0416928196862171,0.0833856393724342,0.25799844492819,0.288327312303075,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0219746461676483,0.0833856393724342,0,0,-0.0702523362953709,-0.238250139713001,0,0,0.11146128891555,0,0,0 | ||
|repeat_enrich_byname=0,0,0,0.0833856393724342,0.25799844492819,0,0.0833856393724342,0,0.0833856393724342,0,0,0,0,0,0,0,-0.247178875285564,0,0.471969033710586,-0.0601295031510377,0.0416928196862171,0.0833856393724342,-0.427279086909571,0,0,0,0.0603606617476625,0.153310840807784,0,0.0833856393724342,0,0,-0.128119866952565,0,-0.0504125515893149,0.0416928196862171,0.0833856393724342,0,0,0,-0.305472230898407,0.0833856393724342,-0.0674964270674785,-0.0683442610773682,0,0,0,0,-0.0717863479689027,0,-0.120879483793741,0.312031751187488,-0.221611588102807,-0.303039655428274,-0.04680465889238,0,0,0,-0.623566922266573,-1.01837891339289,0,0,0.329363814970319,-0.139656798874442,0,0.0833856393724342,-0.391044581551635,0,-0.219215767285659,-0.060281105620854,0,0.119952281312406,0,0,0,0,0,0.0833856393724342,0,0,0,0,0,-0.0574934668214365,0.166711396603812,0.143305623263521,0.213523268164062,0.463155442116975,0,-0.402640848873455,0,0,-0.373286155956567,-0.0372130099384495,0,0.404605544174757,0,0.398469518585986,0.149752765255082,-0.36778047450468,0.208951689061469,-0.147401849371139,-0.189981719549847,0,-0.0703719563464448,-0.0177460824326018,0.192953771075429,0.0252117193907133,0.066141906890382,-0.801109480723365,-0.435294021042474,0,0,0,-0.33484475967369,0,0.00883044895916951,-0.406729075104339,-0.0884618715565255,-0.496097108807147,-0.0709360324366821,-0.0357870480533007,0.282329284770562,-0.0395325284566706,0.116798199468867,-0.0210010762251823,-0.243555426820751,0,0.356033796165896,0,-0.0868196327945951,-0.429878310941426,0.274793482769336,0,0.356558968140661,0.145179007086694,0.133197507982349,-0.426162566452572,0.147177344515838,0,0,0.140012645413545,0.266395015964697,0,0,0,0,-0.0719966096620481,-0.225969139671757,-0.0193322933914824,0,-0.0348068246517634,0.0958384770521341,0.109287931033764,0,-0.350244680115345,-0.202170761610805,0,0.485089591904067,0,-0.0437222533861705,0.259679291031897,-0.0116798555312184,0.664630192406431,0.024938812560609,0.28293993502681,0.237674600712269,0.0854359079322982,0.347793856643544,0,-0.00474119310285352,-0.146319219040077,-0.88354475051838,0.392212800593679,0,0.312609883392338,0,-0.265299202920917,0,0.204970576686354,0,0.505355776406287,-0.54043375147324,1.16678321336615,0.12988928591039,0,0.101465574370539,-0.788130937773974,0,-0.239517103757006,-0.0164716176863073,0,-0.150367083334639,-0.697695966512583,-0.169957608178372,-0.138989456679195,0,-0.790080158389657,0,0,-0.138418001745528,0.159275881746516,0.153310840807784,-0.0773125796121356,0.0534086400446282,-0.141060599078319,-0.115971073434934,0.266395015964697,0,-0.56231469862029,0,0,-0.392404795653968,0,-0.353388307993936,0.848491060818578,0,-0.108622809454255,0,0,-0.177527765965176,0.549013443619948,0.116625713439235,0,0.0833856393724342,-0.034731782816954,0,0,0.0416928196862171,0,-0.088504056475733,0.0833856393724342,0.153310840807784,0,0,0,0,0,0.399911784057383,-0.354833330216448,0,-0.0128646887515205,0,0,0,0,0,0,0,0,-0.808415403371336,0.0596845011140522,0.0905058524876421,0.156761501679204,0.0833856393724342,0.0416928196862171,0,-0.13233776318104,0.191515357416181,0.0833856393724342,0.262889213013273,0,0,0,0,0.180254026175486,0,0,0,0,0.155792811110398,0.049428636707828,0,0,0,0.57665462460615,0.0833856393724342,0,0,0,-0.00229468245623288,0,0,-0.00991742582012844,0,-0.0955830460838925,0.00180375982559276,0,-0.21078647687292,0.125777642690194,-0.419000684700447,0,0,0.684708120672707,0,0,0.227862917152814,0.00101541640676789,0,0,0,0,0,0,0.493699993282781,0,0.24884092971722,0,0.0833856393724342,0,0,0,0.493699993282781,0,0,0.0833856393724342,0.0416928196862171,0,-0.625068805573859,-0.00883841728607622,0,0,0,0,0,0,0,-0.0241060230789031,-0.064842796769997,0,0,0.0100298457470123,0,0,0,0,0,0.077587503956706,0,0,0,0.0128385497929855,0,0.116530906921457,0,0.153310840807784,0,0.153310840807784,0.893517006188875,0,0,-0.12405129138573,0,0,0,0,0,0,0.0833856393724342,0,0,0,0,0,0,0.14307592992925,-0.0657118392649281,0,0.153310840807784,0,0,0,0.266395015964697,0,0.0386897051523187,0,0.213523268164062,0,0,-0.113884373708977,0,0,0,0.417440356372739,0,-0.00700718927860172,0,0,0,0,0,0.153310840807784,0.0416928196862171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0386394401088022,0,-0.28720751597291,0,0,0,-0.232628352633041,0,0,0,0,0,0,0.0103523956576901,0,0,0,0,0,0,0,0.133197507982349,0,0,0,0,0,0,0,0,0,0,0.0833856393724342,0,0,0,0,0,0,-0.0196751077986978,0,0,0,0,0,0,0,0.395742097014724,0,0,-0.0920328098005262,0,0,0.0186421170702822,0.0833856393724342,0,0,-0.109959942573762,-0.283220399823148,-0.0932514166672183,0,0,0.0833856393724342,0.220121149327519,0.213523268164062,0,-0.0482068838774634,0,0.0166082519535329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0.0416928196862171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0416928196862171,0,0,0.356033796165896,0,0,0,0.19940555880768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106761634082031,0,0,0,0,0,0.383136973848337,0,0,0,-0.213086229657044,0,0,0,0,0,0,0.266395015964697,0,0.394751919510905,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0833856393724342,0,0,0,0,0,0.0833856393724342,0,-0.191905598786332,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10508876556873,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0.0833856393724342,0,0,0,0.463155442116975,0.202068226596501,0,0,0,0,0.165886157503144,0,0,0,0,0,0,0,0.153946724904878,0,0,0,0,0,0,0,0,0,0,0.076655420403892,0,0,0.530304827159835,0,0,-0.04399709856361,0,0,0.0416928196862171,0,0,0.0137060813371,0,0,0,0,0,0,-0.0613201791501264,0,0,0,0,0,0,0,0,0,0,0.65242920337023,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0885523467907173,-0.238250139713001,0,0,0.153310840807784,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0416928196862171,0,0,0,0,0,0,0,0,0,0.0416928196862171,0,0,0,0,0,0,0,0,0,0,0,0.0416928196862171,0.0833856393724342,0.0518499352789525,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0469584980312164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0416928196862171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.493699993282781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.306873415391195,0,0,0,0,0,0,0,0,0.0833856393724342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153310840807784,0,0.0833856393724342,0,0,0,0,0,0,0,0,0,0.0833856393724342,0,0,0,0,0,0,0,0.213523268164062,0,0,0,0,0,-0.0394363470371376,0,0,0,0,0,0,0,0,0,0,0,0,0.0833856393724342,0,0,0,0,0,0.197375959755452,0,0,0,0,0,0,0,0,0,0.076655420403892,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0173885825941348,0.0896135823548835,0,0,0,0,0,0,0,-0.0393103576245667,0,0,0,0,0.0833856393724342,0,0,0,1.19327705371969,0,0,0,0,0,0,0,0,0,0,0,0.0416928196862171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.133021718161642,0,0,0,0,0,0.0833856393724342,0,0,0,0,0,0,0,0,0,0,0,0.101480921933966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106761634082031,0,0,0,0.760794431286663,0,0,0,0,0,0,0,0,0,0,0.0833856393724342,0,0,0,0,0.153310840807784,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213523268164062,0,0,0,0,0,0.330198852338113,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153310840807784,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0082451628353693,0.0416928196862171,0,0,0,0,0,0,0,0,0,0.0919474164545415,0,0,0,0,0.356033796165896,0,0,0.0416928196862171,0,0,0,0,0,0,0,0,0,0,-0.199772491678894,0,0,-0.0422874684771159,0,-0.0549639166870095,0,0,0,0,0,0.0398616064747317,0,0,0,0,0,0,0,0,0,0,0,0,0.0833856393724342,0,-0.0606830820200021,0,0,0,0,0,0,0.266395015964697,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560464334628676,0,0.153310840807784,0.607331130433647,0,0.0833856393724342,0.212656580565416,0.0833856393724342,0,0.266395015964697,0.0995548670119866,0,-0.174992895090299,0.240620388932863,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0833856393724342,0.266395015964697,0,-0.0568589461625992,0.04404736776384,0,0.0843191877665513,0,0,0.412524869211891,0,0,0,-0.0125737680011527 | |repeat_enrich_byname=0,0,0,0.0833856393724342,0.25799844492819,0,0.0833856393724342,0,0.0833856393724342,0,0,0,0,0,0,0,-0.247178875285564,0,0.471969033710586,-0.0601295031510377,0.0416928196862171,0.0833856393724342,-0.427279086909571,0,0,0,0.0603606617476625,0.153310840807784,0,0.0833856393724342,0,0,-0.128119866952565,0,-0.0504125515893149,0.0416928196862171,0.0833856393724342,0,0,0,-0.305472230898407,0.0833856393724342,-0.0674964270674785,-0.0683442610773682,0,0,0,0,-0.0717863479689027,0,-0.120879483793741,0.312031751187488,-0.221611588102807,-0.303039655428274,-0.04680465889238,0,0,0,-0.623566922266573,-1.01837891339289,0,0,0.329363814970319,-0.139656798874442,0,0.0833856393724342,-0.391044581551635,0,-0.219215767285659,-0.060281105620854,0,0.119952281312406,0,0,0,0,0,0.0833856393724342,0,0,0,0,0,-0.0574934668214365,0.166711396603812,0.143305623263521,0.213523268164062,0.463155442116975,0,-0.402640848873455,0,0,-0.373286155956567,-0.0372130099384495,0,0.404605544174757,0,0.398469518585986,0.149752765255082,-0.36778047450468,0.208951689061469,-0.147401849371139,-0.189981719549847,0,-0.0703719563464448,-0.0177460824326018,0.192953771075429,0.0252117193907133,0.066141906890382,-0.801109480723365,-0.435294021042474,0,0,0,-0.33484475967369,0,0.00883044895916951,-0.406729075104339,-0.0884618715565255,-0.496097108807147,-0.0709360324366821,-0.0357870480533007,0.282329284770562,-0.0395325284566706,0.116798199468867,-0.0210010762251823,-0.243555426820751,0,0.356033796165896,0,-0.0868196327945951,-0.429878310941426,0.274793482769336,0,0.356558968140661,0.145179007086694,0.133197507982349,-0.426162566452572,0.147177344515838,0,0,0.140012645413545,0.266395015964697,0,0,0,0,-0.0719966096620481,-0.225969139671757,-0.0193322933914824,0,-0.0348068246517634,0.0958384770521341,0.109287931033764,0,-0.350244680115345,-0.202170761610805,0,0.485089591904067,0,-0.0437222533861705,0.259679291031897,-0.0116798555312184,0.664630192406431,0.024938812560609,0.28293993502681,0.237674600712269,0.0854359079322982,0.347793856643544,0,-0.00474119310285352,-0.146319219040077,-0.88354475051838,0.392212800593679,0,0.312609883392338,0,-0.265299202920917,0,0.204970576686354,0,0.505355776406287,-0.54043375147324,1.16678321336615,0.12988928591039,0,0.101465574370539,-0.788130937773974,0,-0.239517103757006,-0.0164716176863073,0,-0.150367083334639,-0.697695966512583,-0.169957608178372,-0.138989456679195,0,-0.790080158389657,0,0,-0.138418001745528,0.159275881746516,0.153310840807784,-0.0773125796121356,0.0534086400446282,-0.141060599078319,-0.115971073434934,0.266395015964697,0,-0.56231469862029,0,0,-0.392404795653968,0,-0.353388307993936,0.848491060818578,0,-0.108622809454255,0,0,-0.177527765965176,0.549013443619948,0.116625713439235,0,0.0833856393724342,-0.034731782816954,0,0,0.0416928196862171,0,-0.088504056475733,0.0833856393724342,0.153310840807784,0,0,0,0,0,0.399911784057383,-0.354833330216448,0,-0.0128646887515205,0,0,0,0,0,0,0,0,-0.808415403371336,0.0596845011140522,0.0905058524876421,0.156761501679204,0.0833856393724342,0.0416928196862171,0,-0.13233776318104,0.191515357416181,0.0833856393724342,0.262889213013273,0,0,0,0,0.180254026175486,0,0,0,0,0.155792811110398,0.049428636707828,0,0,0,0.57665462460615,0.0833856393724342,0,0,0,-0.00229468245623288,0,0,-0.00991742582012844,0,-0.0955830460838925,0.00180375982559276,0,-0.21078647687292,0.125777642690194,-0.419000684700447,0,0,0.684708120672707,0,0,0.227862917152814,0.00101541640676789,0,0,0,0,0,0,0.493699993282781,0,0.24884092971722,0,0.0833856393724342,0,0,0,0.493699993282781,0,0,0.0833856393724342,0.0416928196862171,0,-0.625068805573859,-0.00883841728607622,0,0,0,0,0,0,0,-0.0241060230789031,-0.064842796769997,0,0,0.0100298457470123,0,0,0,0,0,0.077587503956706,0,0,0,0.0128385497929855,0,0.116530906921457,0,0.153310840807784,0,0.153310840807784,0.893517006188875,0,0,-0.12405129138573,0,0,0,0,0,0,0.0833856393724342,0,0,0,0,0,0,0.14307592992925,-0.0657118392649281,0,0.153310840807784,0,0,0,0.266395015964697,0,0.0386897051523187,0,0.213523268164062,0,0,-0.113884373708977,0,0,0,0.417440356372739,0,-0.00700718927860172,0,0,0,0,0,0.153310840807784,0.0416928196862171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0386394401088022,0,-0.28720751597291,0,0,0,-0.232628352633041,0,0,0,0,0,0,0.0103523956576901,0,0,0,0,0,0,0,0.133197507982349,0,0,0,0,0,0,0,0,0,0,0.0833856393724342,0,0,0,0,0,0,-0.0196751077986978,0,0,0,0,0,0,0,0.395742097014724,0,0,-0.0920328098005262,0,0,0.0186421170702822,0.0833856393724342,0,0,-0.109959942573762,-0.283220399823148,-0.0932514166672183,0,0,0.0833856393724342,0.220121149327519,0.213523268164062,0,-0.0482068838774634,0,0.0166082519535329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0.0416928196862171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0416928196862171,0,0,0.356033796165896,0,0,0,0.19940555880768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106761634082031,0,0,0,0,0,0.383136973848337,0,0,0,-0.213086229657044,0,0,0,0,0,0,0.266395015964697,0,0.394751919510905,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0833856393724342,0,0,0,0,0,0.0833856393724342,0,-0.191905598786332,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10508876556873,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0.0833856393724342,0,0,0,0.463155442116975,0.202068226596501,0,0,0,0,0.165886157503144,0,0,0,0,0,0,0,0.153946724904878,0,0,0,0,0,0,0,0,0,0,0.076655420403892,0,0,0.530304827159835,0,0,-0.04399709856361,0,0,0.0416928196862171,0,0,0.0137060813371,0,0,0,0,0,0,-0.0613201791501264,0,0,0,0,0,0,0,0,0,0,0.65242920337023,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0885523467907173,-0.238250139713001,0,0,0.153310840807784,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0416928196862171,0,0,0,0,0,0,0,0,0,0.0416928196862171,0,0,0,0,0,0,0,0,0,0,0,0.0416928196862171,0.0833856393724342,0.0518499352789525,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0469584980312164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0416928196862171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.493699993282781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.306873415391195,0,0,0,0,0,0,0,0,0.0833856393724342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153310840807784,0,0.0833856393724342,0,0,0,0,0,0,0,0,0,0.0833856393724342,0,0,0,0,0,0,0,0.213523268164062,0,0,0,0,0,-0.0394363470371376,0,0,0,0,0,0,0,0,0,0,0,0,0.0833856393724342,0,0,0,0,0,0.197375959755452,0,0,0,0,0,0,0,0,0,0.076655420403892,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0173885825941348,0.0896135823548835,0,0,0,0,0,0,0,-0.0393103576245667,0,0,0,0,0.0833856393724342,0,0,0,1.19327705371969,0,0,0,0,0,0,0,0,0,0,0,0.0416928196862171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.133021718161642,0,0,0,0,0,0.0833856393724342,0,0,0,0,0,0,0,0,0,0,0,0.101480921933966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106761634082031,0,0,0,0.760794431286663,0,0,0,0,0,0,0,0,0,0,0.0833856393724342,0,0,0,0,0.153310840807784,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213523268164062,0,0,0,0,0,0.330198852338113,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153310840807784,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0082451628353693,0.0416928196862171,0,0,0,0,0,0,0,0,0,0.0919474164545415,0,0,0,0,0.356033796165896,0,0,0.0416928196862171,0,0,0,0,0,0,0,0,0,0,-0.199772491678894,0,0,-0.0422874684771159,0,-0.0549639166870095,0,0,0,0,0,0.0398616064747317,0,0,0,0,0,0,0,0,0,0,0,0,0.0833856393724342,0,-0.0606830820200021,0,0,0,0,0,0,0.266395015964697,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560464334628676,0,0.153310840807784,0.607331130433647,0,0.0833856393724342,0.212656580565416,0.0833856393724342,0,0.266395015964697,0.0995548670119866,0,-0.174992895090299,0.240620388932863,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0833856393724342,0.266395015964697,0,-0.0568589461625992,0.04404736776384,0,0.0843191877665513,0,0,0.412524869211891,0,0,0,-0.0125737680011527 | ||
Line 90: | Line 100: | ||
|top_motifs=TOPORS:1.70207575047;MYB:1.56415497553;ELF1,2,4:1.52475359131;POU3F1..4:1.45147273983;FOXP1:1.37449622822;PITX1..3:1.23642195968;GATA6:1.21396394244;SPI1:1.19394278926;SPIB:1.12727590068;RUNX1..3:1.12157839999;E2F1..5:1.07319909148;HOXA9_MEIS1:1.05646555838;PAX4:1.02377827831;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.0108556332;FOXQ1:1.00580753237;YY1:0.999839417369;ALX1:0.943082028457;DMAP1_NCOR{1,2}_SMARC:0.909755219189;NANOG{mouse}:0.90078010295;POU2F1..3:0.869680010444;TEF:0.865452208616;ETS1,2:0.839643599913;NFY{A,B,C}:0.835800887912;bHLH_family:0.78455784138;HES1:0.758805647424;ONECUT1,2:0.746413285598;TLX2:0.746013257072;PAX8:0.694336711216;NRF1:0.686990235094;ZBTB16:0.672961092853;POU5F1:0.668539579625;HBP1_HMGB_SSRP1_UBTF:0.656575711111;STAT1,3:0.654725142347;FOXD3:0.62996633277;HAND1,2:0.625276524111;IKZF2:0.620638667437;VSX1,2:0.595025987994;HOX{A4,D4}:0.540262463098;ZNF143:0.503099367317;AIRE:0.476698821656;NKX6-1,2:0.469041284385;FOXP3:0.467063101256;DBP:0.446888799193;RREB1:0.424753909726;GCM1,2:0.366570600362;HIF1A:0.359297327414;CUX2:0.355574642286;RFX2..5_RFXANK_RFXAP:0.346875946074;POU1F1:0.342495900004;GZF1:0.321037848267;ARID5B:0.296791223106;TFAP4:0.287900046867;NR5A1,2:0.265807880825;CDX1,2,4:0.254215688332;PAX2:0.240264627372;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.235273726896;SOX{8,9,10}:0.215917196787;PBX1:0.195740951387;FOX{I1,J2}:0.171957890497;FOXN1:0.15762819391;TGIF1:0.14844106984;IRF1,2:0.127853047129;ELK1,4_GABP{A,B1}:0.115445030805;CEBPA,B_DDIT3:0.112009714168;ATF5_CREB3:0.103414096777;AR:0.100810675708;MYOD1:0.0759039325577;RBPJ:0.0742604565098;SOX17:0.0681634099537;MYBL2:0.0554992641416;PAX3,7:0.0380102816402;TFDP1:0.0112230988132;OCT4_SOX2{dimer}:0.00461708410236;SREBF1,2:-0.00983017900034;PDX1:-0.0114359199248;SMAD1..7,9:-0.0402893549634;BREu{core}:-0.0457221222142;ZNF148:-0.0480040224298;FOXA2:-0.0564027370407;PPARG:-0.0586139132319;NFKB1_REL_RELA:-0.0992231006536;FOSL2:-0.117262840299;PAX6:-0.131046660046;HOX{A6,A7,B6,B7}:-0.132638255049;GATA4:-0.134922499672;NR6A1:-0.137825804961;RXR{A,B,G}:-0.146563875254;ZNF423:-0.154052732911;PRRX1,2:-0.167704749309;GFI1:-0.183984252024;SOX5:-0.195474857939;AHR_ARNT_ARNT2:-0.224141959496;ZEB1:-0.226720353625;SNAI1..3:-0.229106557596;HNF4A_NR2F1,2:-0.244385606734;STAT5{A,B}:-0.258897674714;ESR1:-0.266699747611;SPZ1:-0.274599052602;MYFfamily:-0.329465944176;RXRA_VDR{dimer}:-0.330403651062;XBP1:-0.344204668451;NFE2:-0.346336527937;HNF1A:-0.353748017893;ATF4:-0.362054550953;NKX2-3_NKX2-5:-0.374793469173;POU6F1:-0.378656571397;ZNF384:-0.397454719358;TFAP2{A,C}:-0.421674374004;FOS_FOS{B,L1}_JUN{B,D}:-0.433261680869;UFEwm:-0.440054314625;FOXM1:-0.440913956049;BPTF:-0.441095171965;ZNF238:-0.447206471321;SRF:-0.4523229103;HMX1:-0.46063281343;PRDM1:-0.46347690453;SOX2:-0.465077363047;RORA:-0.472113915459;ZBTB6:-0.499339691976;MEF2{A,B,C,D}:-0.513626377323;CRX:-0.541814733029;NKX2-1,4:-0.548609574086;BACH2:-0.550261074987;CDC5L:-0.552368188434;KLF4:-0.560682936391;NFE2L2:-0.56849344497;NKX2-2,8:-0.58486716545;NFATC1..3:-0.58657219951;REST:-0.588385978498;EVI1:-0.606604059346;LMO2:-0.614128848787;MZF1:-0.6187976309;EP300:-0.622178725333;ESRRA:-0.648954159579;GTF2I:-0.663235133327;NKX3-1:-0.68954148161;NFE2L1:-0.690964204098;NKX3-2:-0.729074827411;IRF7:-0.730699169009;HLF:-0.767923383282;PATZ1:-0.77853781471;NHLH1,2:-0.783047158253;HSF1,2:-0.789901434427;NFIL3:-0.791109675655;ZFP161:-0.795029119212;EN1,2:-0.814811437071;LHX3,4:-0.82832524606;FOX{F1,F2,J1}:-0.853432055463;STAT2,4,6:-0.871725742448;HMGA1,2:-0.880684378317;PAX5:-0.882317034722;TFAP2B:-0.92563435084;ATF2:-0.936510915099;ATF6:-0.94019574412;FOX{D1,D2}:-0.96307887133;TEAD1:-0.978564351625;CREB1:-0.980139355594;TBX4,5:-0.995262080856;ZIC1..3:-1.01081099243;PAX1,9:-1.03594371796;NFIX:-1.05701188348;TLX1..3_NFIC{dimer}:-1.05949770783;EBF1:-1.06633982504;MAZ:-1.08059239124;GTF2A1,2:-1.08176042356;SP1:-1.08198064435;LEF1_TCF7_TCF7L1,2:-1.08296400817;MTE{core}:-1.08391173492;MED-1{core}:-1.0912546735;HIC1:-1.11169423528;XCPE1{core}:-1.1248742548;RFX1:-1.13582743113;TBP:-1.13822345069;FOXO1,3,4:-1.14559928705;NANOG:-1.14560517601;TFCP2:-1.25506250402;MTF1:-1.28514558993;MAFB:-1.30628832758;ALX4:-1.3121088723;FOXL1:-1.32639419113;HOX{A5,B5}:-1.33616086242;TP53:-1.41231203864;GFI1B:-1.42546915131;IKZF1:-1.43855965565;EGR1..3:-1.43880124016;NR1H4:-1.45218241929;TAL1_TCF{3,4,12}:-1.45558946129;GLI1..3:-1.66441199835;NR3C1:-1.6801121896;ADNP_IRX_SIX_ZHX:-1.83534929309;JUN:-1.96070076811;T:-2.08160488815 | |top_motifs=TOPORS:1.70207575047;MYB:1.56415497553;ELF1,2,4:1.52475359131;POU3F1..4:1.45147273983;FOXP1:1.37449622822;PITX1..3:1.23642195968;GATA6:1.21396394244;SPI1:1.19394278926;SPIB:1.12727590068;RUNX1..3:1.12157839999;E2F1..5:1.07319909148;HOXA9_MEIS1:1.05646555838;PAX4:1.02377827831;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.0108556332;FOXQ1:1.00580753237;YY1:0.999839417369;ALX1:0.943082028457;DMAP1_NCOR{1,2}_SMARC:0.909755219189;NANOG{mouse}:0.90078010295;POU2F1..3:0.869680010444;TEF:0.865452208616;ETS1,2:0.839643599913;NFY{A,B,C}:0.835800887912;bHLH_family:0.78455784138;HES1:0.758805647424;ONECUT1,2:0.746413285598;TLX2:0.746013257072;PAX8:0.694336711216;NRF1:0.686990235094;ZBTB16:0.672961092853;POU5F1:0.668539579625;HBP1_HMGB_SSRP1_UBTF:0.656575711111;STAT1,3:0.654725142347;FOXD3:0.62996633277;HAND1,2:0.625276524111;IKZF2:0.620638667437;VSX1,2:0.595025987994;HOX{A4,D4}:0.540262463098;ZNF143:0.503099367317;AIRE:0.476698821656;NKX6-1,2:0.469041284385;FOXP3:0.467063101256;DBP:0.446888799193;RREB1:0.424753909726;GCM1,2:0.366570600362;HIF1A:0.359297327414;CUX2:0.355574642286;RFX2..5_RFXANK_RFXAP:0.346875946074;POU1F1:0.342495900004;GZF1:0.321037848267;ARID5B:0.296791223106;TFAP4:0.287900046867;NR5A1,2:0.265807880825;CDX1,2,4:0.254215688332;PAX2:0.240264627372;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.235273726896;SOX{8,9,10}:0.215917196787;PBX1:0.195740951387;FOX{I1,J2}:0.171957890497;FOXN1:0.15762819391;TGIF1:0.14844106984;IRF1,2:0.127853047129;ELK1,4_GABP{A,B1}:0.115445030805;CEBPA,B_DDIT3:0.112009714168;ATF5_CREB3:0.103414096777;AR:0.100810675708;MYOD1:0.0759039325577;RBPJ:0.0742604565098;SOX17:0.0681634099537;MYBL2:0.0554992641416;PAX3,7:0.0380102816402;TFDP1:0.0112230988132;OCT4_SOX2{dimer}:0.00461708410236;SREBF1,2:-0.00983017900034;PDX1:-0.0114359199248;SMAD1..7,9:-0.0402893549634;BREu{core}:-0.0457221222142;ZNF148:-0.0480040224298;FOXA2:-0.0564027370407;PPARG:-0.0586139132319;NFKB1_REL_RELA:-0.0992231006536;FOSL2:-0.117262840299;PAX6:-0.131046660046;HOX{A6,A7,B6,B7}:-0.132638255049;GATA4:-0.134922499672;NR6A1:-0.137825804961;RXR{A,B,G}:-0.146563875254;ZNF423:-0.154052732911;PRRX1,2:-0.167704749309;GFI1:-0.183984252024;SOX5:-0.195474857939;AHR_ARNT_ARNT2:-0.224141959496;ZEB1:-0.226720353625;SNAI1..3:-0.229106557596;HNF4A_NR2F1,2:-0.244385606734;STAT5{A,B}:-0.258897674714;ESR1:-0.266699747611;SPZ1:-0.274599052602;MYFfamily:-0.329465944176;RXRA_VDR{dimer}:-0.330403651062;XBP1:-0.344204668451;NFE2:-0.346336527937;HNF1A:-0.353748017893;ATF4:-0.362054550953;NKX2-3_NKX2-5:-0.374793469173;POU6F1:-0.378656571397;ZNF384:-0.397454719358;TFAP2{A,C}:-0.421674374004;FOS_FOS{B,L1}_JUN{B,D}:-0.433261680869;UFEwm:-0.440054314625;FOXM1:-0.440913956049;BPTF:-0.441095171965;ZNF238:-0.447206471321;SRF:-0.4523229103;HMX1:-0.46063281343;PRDM1:-0.46347690453;SOX2:-0.465077363047;RORA:-0.472113915459;ZBTB6:-0.499339691976;MEF2{A,B,C,D}:-0.513626377323;CRX:-0.541814733029;NKX2-1,4:-0.548609574086;BACH2:-0.550261074987;CDC5L:-0.552368188434;KLF4:-0.560682936391;NFE2L2:-0.56849344497;NKX2-2,8:-0.58486716545;NFATC1..3:-0.58657219951;REST:-0.588385978498;EVI1:-0.606604059346;LMO2:-0.614128848787;MZF1:-0.6187976309;EP300:-0.622178725333;ESRRA:-0.648954159579;GTF2I:-0.663235133327;NKX3-1:-0.68954148161;NFE2L1:-0.690964204098;NKX3-2:-0.729074827411;IRF7:-0.730699169009;HLF:-0.767923383282;PATZ1:-0.77853781471;NHLH1,2:-0.783047158253;HSF1,2:-0.789901434427;NFIL3:-0.791109675655;ZFP161:-0.795029119212;EN1,2:-0.814811437071;LHX3,4:-0.82832524606;FOX{F1,F2,J1}:-0.853432055463;STAT2,4,6:-0.871725742448;HMGA1,2:-0.880684378317;PAX5:-0.882317034722;TFAP2B:-0.92563435084;ATF2:-0.936510915099;ATF6:-0.94019574412;FOX{D1,D2}:-0.96307887133;TEAD1:-0.978564351625;CREB1:-0.980139355594;TBX4,5:-0.995262080856;ZIC1..3:-1.01081099243;PAX1,9:-1.03594371796;NFIX:-1.05701188348;TLX1..3_NFIC{dimer}:-1.05949770783;EBF1:-1.06633982504;MAZ:-1.08059239124;GTF2A1,2:-1.08176042356;SP1:-1.08198064435;LEF1_TCF7_TCF7L1,2:-1.08296400817;MTE{core}:-1.08391173492;MED-1{core}:-1.0912546735;HIC1:-1.11169423528;XCPE1{core}:-1.1248742548;RFX1:-1.13582743113;TBP:-1.13822345069;FOXO1,3,4:-1.14559928705;NANOG:-1.14560517601;TFCP2:-1.25506250402;MTF1:-1.28514558993;MAFB:-1.30628832758;ALX4:-1.3121088723;FOXL1:-1.32639419113;HOX{A5,B5}:-1.33616086242;TP53:-1.41231203864;GFI1B:-1.42546915131;IKZF1:-1.43855965565;EGR1..3:-1.43880124016;NR1H4:-1.45218241929;TAL1_TCF{3,4,12}:-1.45558946129;GLI1..3:-1.66441199835;NR3C1:-1.6801121896;ADNP_IRX_SIX_ZHX:-1.83534929309;JUN:-1.96070076811;T:-2.08160488815 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10828-111C9;search_select_hide=table117:FF:10828-111C9 | |||
}} | }} |
Latest revision as of 15:07, 3 June 2020
Name: | acute myeloid leukemia (FAB M1) cell line:HYT-1 |
---|---|
Species: | Human (Homo sapiens) |
Library ID: | CNhs13054 |
Sample type: | cell lines |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
|
CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Download raw sequence, BAM & CTSS | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13054
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13054
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13054
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101883 acute myeloid leukemia cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
8692 (myeloid leukemia)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0101883 (acute myeloid leukemia cell line sample)
0100740 (myeloid leukemia cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)