FFCP PHASE1:Mm9::chr15:85905221..85905240,+: Difference between revisions
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|id=chr15:85905221..85905240,+
|short_description=p4@Gramd4
|description=CAGE_peak_4_at_Gramd4_5end
|association_with_transcript=58bp_to_ENSMUST00000147286_5end
|E...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=223752 | |EntrezGene=223752 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=24 | |||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=58bp_to_ENSMUST00000147286_5end | |||
|cluster_id=chr15:85905221..85905240,+ | |||
|description=CAGE_peak_4_at_Gramd4_5end | |||
|id=chr15:85905221..85905240,+ | |||
|ontology_enrichment_celltype=CL:0000239!8.15e-11!6;CL:0000677!8.15e-11!6;CL:0000212!8.15e-11!6;CL:0000584!8.15e-11!6;CL:0000075!4.02e-09!7;CL:0002563!4.77e-09!9;CL:0002251!4.77e-09!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000682,2.41e-13,3;CL:0000239,8.90e-12,6;CL:0000677,8.90e-12,6;CL:0000584,8.90e-12,6;CL:0000075,4.15e-10,7;CL:0002563,7.06e-08,9;CL:0002251,7.06e-08,9;CL:0000066,1.29e-07,25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!1.07e-21!43;UBERON:0005409!1.69e-20!59;UBERON:0000344!6.28e-18!15;UBERON:0001242!6.41e-15!13;UBERON:0000060!6.41e-15!13;UBERON:0001262!6.41e-15!13;UBERON:0004786!6.41e-15!13;UBERON:0004923!2.57e-13!24;UBERON:0004119!3.25e-09!130;UBERON:0000925!3.25e-09!130;UBERON:0006595!3.25e-09!130;UBERON:0003350!4.77e-09!9;UBERON:0004808!4.77e-09!9;UBERON:0001277!4.77e-09!9;UBERON:0001007!8.73e-09!128;UBERON:0001555!8.73e-09!128;UBERON:0007026!8.73e-09!128;UBERON:0004921!1.68e-07!126;UBERON:0004185!1.68e-07!126;UBERON:0000485!3.71e-07!11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,4.13e-31,31;UBERON:0000344,1.18e-25,15;UBERON:0005409,1.34e-19,47;UBERON:0001242,2.72e-19,13;UBERON:0001262,2.72e-19,13;UBERON:0004786,2.72e-19,13;UBERON:0004923,1.13e-18,24;UBERON:0002108,8.90e-16,4;UBERON:0000331,5.51e-12,3;UBERON:0002116,5.51e-12,3;UBERON:0001204,5.51e-12,3;UBERON:0001168,5.51e-12,3;UBERON:0001962,8.97e-09,2;UBERON:0001961,8.97e-09,2;UBERON:0001744,8.97e-09,2;UBERON:0001007,2.31e-08,116;UBERON:0001555,2.31e-08,116;UBERON:0007026,2.31e-08,116;UBERON:0004119,3.63e-08,118;UBERON:0000925,3.63e-08,118;UBERON:0006595,3.63e-08,118;UBERON:0003350,7.06e-08,9;UBERON:0004808,7.06e-08,9;UBERON:0001277,7.06e-08,9 | |||
|phase1_expression=0,13.2610654902957,13.6499771816861,3.62957053568196,2.00358291978539,0.503637815735669,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75991665072747,1.83527424853736,3.44539178469012,3.01533397311352,3.878482188346,1.14014051673824,1.00812051903972,1.77384408524244,0,0,0,0.288851619751275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0,0,0,0,0,0,0,1.73036477414062,0,0,0,0,0,0,0,0,2.55457055208591,0,0,0,0,0,0,0,0,0,0,0,0,0.252722758433675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.348252166522167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.29544417878937,5.55346189993443,0,0,0,0.80673409849337,0.444756087689741,0.951128130562796,1.89811624617805,0.329397909448022,1.00534083520108,0.198956472041151,0.779856348476481,5.39291645192533,1.94524244887225,1.1948476395262,0,0,0,0,0.193952487167626,0.140271639780637,0.126473074248515,0,0,0.246794327843601,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179397413521912,0,0,0,0,0,0,0,0,0,0.157635144106191,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.516856586336442,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.21183207086382,0,0,0.161464426695906,0,0,0,2.62332752966866,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216010681643603,0,0.218362563746178,0.134864346384821,0.165306911450672,0,0.518459893167171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100826185136841,0,0.0962118416403295,0,0,0.221985953374065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222246727801615,0,0.320919209591815,0,0,0.188626341386076,0,0.0640251524048693,0,0.476293691283074,0,0.192909220463705,0,0,0,0,0,0,0,0.0846146078916765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,13.2610654902957,13.6499771816861,3.62957053568196,2.00358291978539,0.503637815735669,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75991665072747,1.83527424853736,3.44539178469012,3.01533397311352,3.878482188346,1.14014051673824,1.00812051903972,1.77384408524244,0,0,0,0.288851619751275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0,0,0,0,0,0,0,1.73036477414062,0,0,0,0,0,0,0,0,2.55457055208591,0,0,0,0,0,0,0,0,0,0,0,0,0.252722758433675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.348252166522167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.29544417878937,5.55346189993443,0,0,0,0.80673409849337,0.444756087689741,0.951128130562796,1.89811624617805,0.329397909448022,1.00534083520108,0.198956472041151,0.779856348476481,5.39291645192533,1.94524244887225,1.1948476395262,0,0,0,0,0.193952487167626,0.140271639780637,0.126473074248515,0,0,0.246794327843601,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179397413521912,0,0,0,0,0,0,0,0,0,0.157635144106191,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.516856586336442,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.21183207086382,0,0,0.161464426695906,0,0,0,2.62332752966866,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216010681643603,0,0.218362563746178,0.134864346384821,0.165306911450672,0,0.518459893167171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100826185136841,0,0.0962118416403295,0,0,0.221985953374065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222246727801615,0,0.320919209591815,0,0,0.188626341386076,0,0.0640251524048693,0,0.476293691283074,0,0.192909220463705,0,0,0,0,0,0,0,0.0846146078916765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p4@Gramd4 | |||
}} | }} |
Latest revision as of 06:37, 27 September 2015
Short description: | p4@Gramd4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Gramd4_5end |
Coexpression cluster: | MCL_coexpression_mm9:24 |
Association with transcript: | 58bp_to_ENSMUST00000147286_5end |
EntrezGene: | Gramd4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
M cell of gut | 2.41e-13 | 3 |
brush border epithelial cell | 8.90e-12 | 6 |
gut absorptive cell | 8.90e-12 | 6 |
enterocyte | 8.90e-12 | 6 |
columnar/cuboidal epithelial cell | 4.15e-10 | 7 |
intestinal epithelial cell | 7.06e-08 | 9 |
epithelial cell of alimentary canal | 7.06e-08 | 9 |
epithelial cell | 1.29e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
intestine | 4.13e-31 | 31 |
mucosa | 1.18e-25 | 15 |
gastrointestinal system | 1.34e-19 | 47 |
intestinal mucosa | 2.72e-19 | 13 |
wall of intestine | 2.72e-19 | 13 |
gastrointestinal system mucosa | 2.72e-19 | 13 |
organ component layer | 1.13e-18 | 24 |
small intestine | 8.90e-16 | 4 |
ileal mucosa | 5.51e-12 | 3 |
ileum | 5.51e-12 | 3 |
mucosa of small intestine | 5.51e-12 | 3 |
wall of small intestine | 5.51e-12 | 3 |
gut-associated lymphoid tissue | 8.97e-09 | 2 |
mucosa-associated lymphoid tissue | 8.97e-09 | 2 |
lymphoid tissue | 8.97e-09 | 2 |
digestive system | 2.31e-08 | 116 |
digestive tract | 2.31e-08 | 116 |
primitive gut | 2.31e-08 | 116 |
endoderm-derived structure | 3.63e-08 | 118 |
endoderm | 3.63e-08 | 118 |
presumptive endoderm | 3.63e-08 | 118 |
epithelium of mucosa | 7.06e-08 | 9 |
gastrointestinal system epithelium | 7.06e-08 | 9 |
intestinal epithelium | 7.06e-08 | 9 |