FFCP PHASE1:Mm9::chr4:117118403..117118419,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr4:117118403..117118419,+
|short_description=p1@ENSMUST00000136115
|description=CAGE_peak_1_at_ENSMUST00000136115_5end
|association_with_transcript=-135bp_to_...") |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene= | |EntrezGene= | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=397 | |||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-135bp_to_ENSMUST00000136115_5end | |||
|cluster_id=chr4:117118403..117118419,+ | |||
|description=CAGE_peak_1_at_ENSMUST00000136115_5end | |||
|id=chr4:117118403..117118419,+ | |||
|ontology_enrichment_celltype=CL:0000473!1.28e-10!3;CL:0000627!1.28e-10!3;CL:0000682!1.28e-10!3;CL:0000239!6.01e-09!6;CL:0000677!6.01e-09!6;CL:0000212!6.01e-09!6;CL:0000584!6.01e-09!6;CL:0000075!1.15e-07!7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000682,6.99e-27,3;CL:0000239,2.44e-23,6;CL:0000677,2.44e-23,6;CL:0000584,2.44e-23,6;CL:0000075,4.48e-20,7;CL:0000066,8.60e-17,25;CL:0002563,1.03e-15,9;CL:0002251,1.03e-15,9;CL:0000473,6.24e-12,7;CL:0002076,1.41e-09,15;CL:0000223,2.96e-07,20 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004923!1.38e-11!24;UBERON:0000344!5.04e-10!15;UBERON:0001962!6.89e-08!2;UBERON:0001961!6.89e-08!2;UBERON:0001744!6.89e-08!2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,2.13e-28,15;UBERON:0001962,3.08e-19,2;UBERON:0001961,3.08e-19,2;UBERON:0001744,3.08e-19,2;UBERON:0004923,1.06e-17,24;UBERON:0001242,9.19e-17,13;UBERON:0001262,9.19e-17,13;UBERON:0004786,9.19e-17,13;UBERON:0003350,1.03e-15,9;UBERON:0004808,1.03e-15,9;UBERON:0001277,1.03e-15,9;UBERON:0002465,3.66e-13,3;UBERON:0000485,6.25e-13,11;UBERON:0003199,1.63e-10,1;UBERON:0000160,4.40e-07,31 | |||
|phase1_expression=0,4.53668029931169,3.18499467572675,0,0,2.01455126294268,3.27057696833736,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,8.15961356246374,11.6998733344257,2.29692785646008,5.1691439539089,4.52489588640367,0,0,4.43461021310609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0914876436024097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0680364991513279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102904612379284,0,0,0,0,0,0,0,0,0,0,0,0,0.19496408711912,0,0.216138049874694,0.199141273254367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162135226775035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.356497378384721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120625849856312,0,0,0,0,0.170870880797853,0,0,0.188368457004691,0.136694227721025,0,0,0,0,0,0,0,0.108005340821801,0,0,0,0,0,0,0,0,0,0,0,0,0.506868376472335,0.234714477291508,0,0.104859344425711,0,0,0,0,0,0,0,0,0.120195449519969,0,0,0,0,0.292373642219257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135804113845862,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,4.53668029931169,3.18499467572675,0,0,2.01455126294268,3.27057696833736,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,8.15961356246374,11.6998733344257,2.29692785646008,5.1691439539089,4.52489588640367,0,0,4.43461021310609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0914876436024097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0680364991513279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102904612379284,0,0,0,0,0,0,0,0,0,0,0,0,0.19496408711912,0,0.216138049874694,0.199141273254367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162135226775035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.356497378384721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120625849856312,0,0,0,0,0.170870880797853,0,0,0.188368457004691,0.136694227721025,0,0,0,0,0,0,0,0.108005340821801,0,0,0,0,0,0,0,0,0,0,0,0,0.506868376472335,0.234714477291508,0,0.104859344425711,0,0,0,0,0,0,0,0,0.120195449519969,0,0,0,0,0.292373642219257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135804113845862,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p1@ENSMUST00000136115 | |||
}} | }} |
Latest revision as of 15:11, 4 August 2015
Short description: | p1@ENSMUST00000136115 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_ENSMUST00000136115_5end |
Coexpression cluster: | MCL_coexpression_mm9:397 |
Association with transcript: | -135bp_to_ENSMUST00000136115_5end |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
M cell of gut | 6.99e-27 | 3 |
brush border epithelial cell | 2.44e-23 | 6 |
gut absorptive cell | 2.44e-23 | 6 |
enterocyte | 2.44e-23 | 6 |
columnar/cuboidal epithelial cell | 4.48e-20 | 7 |
epithelial cell | 8.60e-17 | 25 |
intestinal epithelial cell | 1.03e-15 | 9 |
epithelial cell of alimentary canal | 1.03e-15 | 9 |
defensive cell | 6.24e-12 | 7 |
endo-epithelial cell | 1.41e-09 | 15 |
endodermal cell | 2.96e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
mucosa | 2.13e-28 | 15 |
gut-associated lymphoid tissue | 3.08e-19 | 2 |
mucosa-associated lymphoid tissue | 3.08e-19 | 2 |
lymphoid tissue | 3.08e-19 | 2 |
organ component layer | 1.06e-17 | 24 |
intestinal mucosa | 9.19e-17 | 13 |
wall of intestine | 9.19e-17 | 13 |
gastrointestinal system mucosa | 9.19e-17 | 13 |
epithelium of mucosa | 1.03e-15 | 9 |
gastrointestinal system epithelium | 1.03e-15 | 9 |
intestinal epithelium | 1.03e-15 | 9 |
lymphoid system | 3.66e-13 | 3 |
simple columnar epithelium | 6.25e-13 | 11 |
egg chamber | 1.63e-10 | 1 |
intestine | 4.40e-07 | 31 |