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(Created page with "{{f5samples |id=FF:10230-103I5 |name=chicken embryo, extraembryonic tissue, day07 (HH32) |sample_id=10230 |rna_tube_id=103I5 |rna_box=103 |rna_position=I5 |sample_cell_lot=#21...")
 
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{{f5samples
{{f5samples
|id=FF:10230-103I5
|DRA_sample_Accession=chicken_CAGE@SAMD00053766
|name=chicken embryo, extraembryonic tissue, day07 (HH32)
|accession_numbers=chicken_CAGE;DRX057295;DRR063054;DRZ007549;DRZ007581
|sample_id=10230
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062,UBERON:0000478,UBERON:0005292
|rna_tube_id=103I5
|rna_box=103
|rna_position=I5
|sample_cell_lot=#21
|sample_cell_catalog=
|sample_company=
|rna_lot_number=
|rna_catalog_number=
|sample_species=Chicken (Gallus gallus)
|sample_strain=
|sample_dev_stage=HH32
|sample_tissue=extraembryonic tissue
|sample_donor(cell lot)=
|sample_sex=
|sample_age=
|sample_ethnicity=
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_cell_line=
|sample_collaboration=
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=
|rna_extraction_protocol=
|rna_weight_ug=100
|rna_concentration=1.8
|sample_note=Roughly equivalent of mouse E14.5
|profile_hcage=CNhs14210,LSID1178,release016,COMPLETED
|profile_cagescan=
|profile_srnaseq=
|profile_rnaseq=
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON:0000468,UBERON:0000478,UBERON:0000479,UBERON:0000922,UBERON:0001062,UBERON:0005292
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000101,FF:0000032,FF:0000001,FF:0000242,FF:0000216,FF:0000218
|comment=
|created_by=
|creation_date=
|def=
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
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|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|id=FF:10230-103I5
|is_a=EFO:0002091;;FF:0000218
|is_obsolete=
|library_id=CNhs14210
|name=chicken embryo, extraembryonic tissue, day07 (HH32)
|namespace=FANTOM5
|part_of=
|profile_cagescan=
|profile_hcage=CNhs14210,LSID1178,release016,COMPLETED
|profile_rnaseq=
|profile_srnaseq=
|rna_box=103
|rna_catalog_number=
|rna_concentration=1.8
|rna_extraction_protocol=
|rna_lot_number=
|rna_od260/230=
|rna_od260/280=
|rna_position=I5
|rna_rin=
|rna_sample_type=
|rna_tube_id=103I5
|rna_weight_ug=100
|sample_age=
|sample_category=tissues
|sample_cell_catalog=
|sample_cell_line=
|sample_cell_lot=#21
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_collaboration=
|sample_company=
|sample_description=
|sample_dev_stage=HH32
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_id=10230
|sample_note=Roughly equivalent of mouse E14.5
|sample_sex=
|sample_species=Gallus gallus
|sample_strain=
|sample_tissue=extraembryonic tissue
|top_motifs=
|top_motifs=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_chicken;search_select_hide=table111:FF:10230-103I5;search_select_hide=table117:FF:10230-103I5
}}
}}

Latest revision as of 09:38, 5 June 2020


Name:chicken embryo, extraembryonic tissue, day07 (HH32)
Species:Gallus gallus
Library ID:CNhs14210
Sample type:tissues
ZENBU report :link
Additional information
Sample information
strainNA
tissueextraembryonic tissue
dev stageHH32
sexNA
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationNA
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
chicken_CAGE  SAMD00053766
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs14210 chicken_CAGE DRX057295 DRR063054
Accession ID

Library idBAMCTSS
CNhs14210 DRZ007549 DRZ007581



FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
0000478 (extraembryonic structure)
0005292 (extraembryonic tissue)

FF: FANTOM5
0000101 (sample by species)
0000032 (chicken sample)
0000001 (sample)
0000242 (chicken developmental series)
0000216 (chicken extraembryonic)
0000218 (chicken embryo extraembryonic tissue day7 HH32)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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