FFCP PHASE1:Hg19::chr1:118364421..118364426,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:118364421..118364426,- to FFCP PHASE1:Hg19::chr1:118364421..118364426,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr1:118364421..118364426,- | |||
|description=CAGE_peak_at_chr1:118364421..118364426,- | |||
|id=chr1:118364421..118364426,- | |||
|ontology_enrichment_celltype=CL:0002139!3.51e-34!24;CL:0000115!6.45e-31!35;CL:0000213!9.59e-26!57;CL:0000215!9.59e-26!57;CL:0000071!5.00e-23!18;CL:0002546!5.00e-23!18;CL:0002078!6.44e-23!44;CL:0000222!1.81e-21!119;CL:0005020!4.73e-13!6;CL:0002138!4.73e-13!6;CL:0005022!4.73e-13!6;CL:0000220!1.93e-12!246;CL:0002321!3.24e-12!248;CL:0002543!4.73e-12!6;CL:0000076!8.50e-11!62;CL:1000413!4.76e-08!9;CL:0002144!2.94e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002139;9.96e-53;24!CL:0000115;5.79e-34;36!CL:0000071;2.68e-31;18!CL:0002078;2.53e-25;45!CL:0002138;6.30e-25;6!CL:0000213;8.80e-16;58!CL:0000215;8.80e-16;58!CL:0002543;1.62e-14;6!CL:0002144;6.55e-13;3!CL:1000413;1.20e-09;9!CL:0002544;5.25e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,6.48e-53,24;CL:0000115,8.30e-41,36;CL:0002078,3.05e-32,45;CL:0000071,1.95e-31,18;CL:0002546,1.95e-31,18;CL:0005020,5.76e-25,6;CL:0002138,5.76e-25,6;CL:0005022,5.76e-25,6;CL:0000213,1.49e-24,58;CL:0000215,1.49e-24,58;CL:0000222,1.17e-16,121;CL:0002543,2.00e-14,6;CL:0002144,3.36e-13,3;CL:0000076,1.58e-10,63;CL:1000413,1.14e-09,9;CL:0002321,8.47e-09,250;CL:0002544,4.66e-07,6 | |||
|ontology_enrichment_development_v019=CL:0002546;2.68e-31;18!CL:0005022;6.30e-25;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:5662;1.13e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:5662,1.19e-10,1 | |||
|ontology_enrichment_uberon=UBERON:0000055!9.76e-27!69;UBERON:0002049!1.89e-23!79;UBERON:0007798!1.89e-23!79;UBERON:0001986!5.00e-23!18;UBERON:0004638!5.00e-23!18;UBERON:0004852!5.00e-23!18;UBERON:0001981!2.38e-20!60;UBERON:0007500!2.38e-20!60;UBERON:0004537!2.38e-20!60;UBERON:0006965!2.38e-20!60;UBERON:0000487!5.22e-18!22;UBERON:0004535!7.84e-17!110;UBERON:0001009!4.41e-16!113;UBERON:0006914!2.60e-15!25;UBERON:0004872!2.73e-15!84;UBERON:0003914!1.83e-13!118;UBERON:0000490!5.35e-13!138;UBERON:0001637!2.80e-12!42;UBERON:0003509!2.80e-12!42;UBERON:0004572!2.80e-12!42;UBERON:0000477!1.05e-10!286;UBERON:0004111!1.55e-09!241;UBERON:0001473!1.61e-09!8;UBERON:0004536!1.61e-09!8;UBERON:0006558!1.61e-09!8;UBERON:0003915!4.76e-08!9;UBERON:0004700!4.76e-08!9;UBERON:0001917!4.76e-08!9;UBERON:0000947!5.79e-08!21;UBERON:0010191!5.79e-08!21;UBERON:0001638!1.03e-07!9;UBERON:0003920!1.03e-07!9;UBERON:0004582!1.03e-07!9;UBERON:0002465!2.09e-07!10;UBERON:0004573!2.42e-07!33;UBERON:0004571!2.42e-07!33;UBERON:0001915!2.94e-07!3;UBERON:0001982!2.94e-07!3;UBERON:0002367!3.58e-07!11;UBERON:0010147!3.58e-07!11;UBERON:0009846!3.58e-07!11;UBERON:0003353!3.58e-07!11;UBERON:0004902!3.58e-07!11;UBERON:0003820!3.58e-07!11;UBERON:0009847!3.58e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;2.68e-31;18!UBERON:0001986;2.68e-31;18!UBERON:0004852;2.68e-31;18!UBERON:0000487;1.91e-25;22!UBERON:0006914;2.78e-22;25!UBERON:0001473;9.05e-19;8!UBERON:0004536;9.05e-19;8!UBERON:0006558;9.05e-19;8!UBERON:0000490;1.00e-16;33!UBERON:0002465;4.58e-15;10!UBERON:0000055;3.00e-13;65!UBERON:0010523;6.55e-13;3!UBERON:0001915;6.55e-13;3!UBERON:0001982;6.55e-13;3!UBERON:0001638;7.41e-10;9!UBERON:0003920;7.41e-10;9!UBERON:0004582;7.41e-10;9!UBERON:0003915;1.20e-09;9!UBERON:0004700;1.20e-09;9!UBERON:0001917;1.20e-09;9!UBERON:0002049;2.07e-09;75!UBERON:0007798;2.07e-09;75!UBERON:0007500;1.21e-08;56!UBERON:0001981;1.21e-08;56!UBERON:0004537;1.21e-08;56!UBERON:0003914;2.32e-07;74!UBERON:0000947;4.32e-07;21!UBERON:0010191;4.32e-07;21!UBERON:0004535;4.55e-07;109 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,1.95e-31,18;UBERON:0001986,1.95e-31,18;UBERON:0004852,1.95e-31,18;UBERON:0000487,1.47e-25,22;UBERON:0000055,5.93e-24,68;UBERON:0006914,2.22e-22,25;UBERON:0002049,1.37e-20,78;UBERON:0007798,1.37e-20,78;UBERON:0001473,8.47e-19,8;UBERON:0004536,8.47e-19,8;UBERON:0006558,8.47e-19,8;UBERON:0002465,4.34e-15,10;UBERON:0004535,4.46e-14,109;UBERON:0007500,7.08e-14,59;UBERON:0001981,7.08e-14,59;UBERON:0004537,7.08e-14,59;UBERON:0006965,7.08e-14,59;UBERON:0001009,1.23e-13,112;UBERON:0010523,3.36e-13,3;UBERON:0001915,3.36e-13,3;UBERON:0001982,3.36e-13,3;UBERON:0001638,8.49e-10,9;UBERON:0003920,8.49e-10,9;UBERON:0004582,8.49e-10,9;UBERON:0003915,1.14e-09,9;UBERON:0004700,1.14e-09,9;UBERON:0001917,1.14e-09,9;UBERON:0004872,1.97e-09,83;UBERON:0004111,2.16e-09,240;UBERON:0003914,3.05e-09,117;UBERON:0000947,4.39e-07,21;UBERON:0010191,4.39e-07,21;UBERON:0000490,6.89e-07,148 | |||
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| ||
|short_description=p@chr1:118364421..118364426,- | |||
}} | }} |
Latest revision as of 20:13, 27 July 2015
Short description: | p@chr1:118364421..118364426, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:118364421..118364426, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 6.48e-53 | 24 |
endothelial cell | 8.30e-41 | 36 |
meso-epithelial cell | 3.05e-32 | 45 |
blood vessel endothelial cell | 1.95e-31 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.95e-31 | 18 |
lymphangioblast | 5.76e-25 | 6 |
endothelial cell of lymphatic vessel | 5.76e-25 | 6 |
vascular lymphangioblast | 5.76e-25 | 6 |
lining cell | 1.49e-24 | 58 |
barrier cell | 1.49e-24 | 58 |
mesodermal cell | 1.17e-16 | 121 |
vein endothelial cell | 2.00e-14 | 6 |
capillary endothelial cell | 3.36e-13 | 3 |
squamous epithelial cell | 1.58e-10 | 63 |
endothelial cell of artery | 1.14e-09 | 9 |
embryonic cell | 8.47e-09 | 250 |
aortic endothelial cell | 4.66e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 1.95e-31 | 18 |
endothelium | 1.95e-31 | 18 |
cardiovascular system endothelium | 1.95e-31 | 18 |
simple squamous epithelium | 1.47e-25 | 22 |
vessel | 5.93e-24 | 68 |
squamous epithelium | 2.22e-22 | 25 |
vasculature | 1.37e-20 | 78 |
vascular system | 1.37e-20 | 78 |
lymphatic vessel | 8.47e-19 | 8 |
lymph vasculature | 8.47e-19 | 8 |
lymphatic part of lymphoid system | 8.47e-19 | 8 |
lymphoid system | 4.34e-15 | 10 |
cardiovascular system | 4.46e-14 | 109 |
epithelial tube open at both ends | 7.08e-14 | 59 |
blood vessel | 7.08e-14 | 59 |
blood vasculature | 7.08e-14 | 59 |
vascular cord | 7.08e-14 | 59 |
circulatory system | 1.23e-13 | 112 |
microcirculatory vessel | 3.36e-13 | 3 |
endothelium of capillary | 3.36e-13 | 3 |
capillary | 3.36e-13 | 3 |
vein | 8.49e-10 | 9 |
venous blood vessel | 8.49e-10 | 9 |
venous system | 8.49e-10 | 9 |
endothelial tube | 1.14e-09 | 9 |
arterial system endothelium | 1.14e-09 | 9 |
endothelium of artery | 1.14e-09 | 9 |
splanchnic layer of lateral plate mesoderm | 1.97e-09 | 83 |
anatomical conduit | 2.16e-09 | 240 |
epithelial tube | 3.05e-09 | 117 |
aorta | 4.39e-07 | 21 |
aortic system | 4.39e-07 | 21 |
unilaminar epithelium | 6.89e-07 | 148 |
Ontology term | p-value | n |
---|---|---|
pleomorphic carcinoma | 1.19e-10 | 1 |