FFCP PHASE1:Hg19::chr2:237077022..237077038,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:237077022..237077038,- to FFCP PHASE1:Hg19::chr2:237077022..237077038,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2637 | |EntrezGene=2637 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4186 | |HGNC=4186 | ||
|TSSclassifier=strong | |||
|UniProt=P52951 | |UniProt=P52951 | ||
|association_with_transcript=-10bp_to_ENST00000306318_5end | |||
|cluster_id=chr2:237077022..237077038,- | |||
|coexpression_cluster_id=C4202 | |||
|description=CAGE_peak_1_at_GBX2_5end | |||
|id=chr2:237077022..237077038,- | |||
|ontology_enrichment_celltype=CL:0000066!4.50e-20!254;CL:0000076!8.76e-15!62;CL:0000213!7.09e-13!57;CL:0000215!7.09e-13!57;CL:0000071!9.09e-12!18;CL:0002546!9.09e-12!18;CL:0002078!3.63e-11!44;CL:0000115!3.84e-11!35;CL:0002139!5.84e-11!24;CL:0002321!9.56e-09!248;CL:1000413!1.25e-08!9;CL:0000220!4.24e-08!246;CL:0000095!1.66e-07!17;CL:0000123!1.66e-07!17;CL:0002319!6.28e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0000071;7.79e-19;18!CL:1000413;2.75e-18;9!CL:0000115;1.83e-13;36!CL:0002139;2.16e-13;24!CL:0000213;2.05e-11;58!CL:0000215;2.05e-11;58!CL:0002544;2.49e-11;6!CL:0002078;5.27e-10;45!CL:0002603;1.51e-09;3!CL:0000039;1.57e-09;7!CL:0000586;1.57e-09;7!CL:0002322;2.41e-08;5!CL:0000076;1.03e-07;63 | |||
|ontology_enrichment_celltype_v019_2=CL:0000071,5.59e-19,18;CL:0002546,5.59e-19,18;CL:1000413,2.11e-18,9;CL:0000213,1.96e-16,58;CL:0000215,1.96e-16,58;CL:0000115,3.61e-15,36;CL:0002078,1.00e-14,45;CL:0002139,1.70e-13,24;CL:0000076,1.21e-12,63;CL:0000066,2.64e-12,253;CL:0002544,2.73e-11,6;CL:0000039,1.42e-09,7;CL:0000586,1.42e-09,7;CL:0002603,1.58e-09,3;CL:0000222,1.04e-08,121;CL:0002322,2.54e-08,5;CL:0002321,1.84e-07,250 | |||
|ontology_enrichment_development_v019=CL:0002546;7.79e-19;18!UBERON:0009117;7.51e-07;10!UBERON:0005564;7.51e-07;10 | |||
|ontology_enrichment_disease=DOID:0050687!8.36e-23!143;DOID:305!6.08e-20!106;DOID:162!1.94e-15!235;DOID:14566!5.16e-15!239;DOID:3095!3.68e-07!22;DOID:2994!3.68e-07!22 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003076!4.90e-12!15;UBERON:0003057!4.90e-12!15;UBERON:0001986!9.09e-12!18;UBERON:0004638!9.09e-12!18;UBERON:0004852!9.09e-12!18;UBERON:0004733!9.06e-10!12;UBERON:0002028!9.06e-10!12;UBERON:0007277!9.06e-10!12;UBERON:0004732!9.35e-09!13;UBERON:0000487!1.04e-08!22;UBERON:0003915!1.25e-08!9;UBERON:0004700!1.25e-08!9;UBERON:0001917!1.25e-08!9;UBERON:0006914!1.88e-08!25;UBERON:0000073!3.82e-08!94;UBERON:0001016!3.82e-08!94;UBERON:0002680!1.96e-07!9;UBERON:0001895!1.96e-07!9;UBERON:0010092!1.96e-07!9;UBERON:0000025!3.89e-07!194;UBERON:0001017!4.53e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;7.79e-19;18!UBERON:0001986;7.79e-19;18!UBERON:0004852;7.79e-19;18!UBERON:0003915;2.75e-18;9!UBERON:0004700;2.75e-18;9!UBERON:0001917;2.75e-18;9!UBERON:0006914;2.91e-15;25!UBERON:0000487;7.13e-15;22!UBERON:0000490;3.47e-10;33!UBERON:0004733;6.01e-10;12!UBERON:0002028;6.01e-10;12!UBERON:0004732;4.28e-09;13!UBERON:0002037;6.60e-08;6!UBERON:0002680;1.63e-07;9!UBERON:0001895;1.63e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,5.59e-19,18;UBERON:0001986,5.59e-19,18;UBERON:0004852,5.59e-19,18;UBERON:0003915,2.11e-18,9;UBERON:0004700,2.11e-18,9;UBERON:0001917,2.11e-18,9;UBERON:0006914,2.26e-15,25;UBERON:0000487,5.47e-15,22;UBERON:0003076,1.97e-12,15;UBERON:0003057,1.97e-12,15;UBERON:0004733,5.75e-10,12;UBERON:0002028,5.75e-10,12;UBERON:0007277,5.75e-10,12;UBERON:0004732,4.11e-09,13;UBERON:0002037,6.28e-08,6;UBERON:0006215,6.28e-08,6;UBERON:0002680,1.28e-07,9;UBERON:0001895,1.28e-07,9;UBERON:0010092,1.28e-07,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,25.4860590218951,5.10001728110633,26.6436513256375,0.286235987131057,0.958120975510189,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209658645508376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.7764857399674,0,2.08284300964557,7.91431118693613,9.22898759661793,1.92582629358047,6.68783892917794,0.258416759169329,0,0,0.402829317109147,2.28081631715554,0.24406205754817,4.04429388380456,3.24056779152704,0.17859945656816,0,0,3.06633274931766,3.79706263827252,1.64881569537367,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,2.2818872861778,0,0,0,0,0,0,0,0,0,0,0,0,0.250237039743928,0,0.438977620880838,0,0,0.567160915800105,1.61450672119976,1.49490172172997,0,0,0,0,0,0,0,0,0.0920498986422993,0,0,0.201504196455281,0,0,0.272746120590835,0,2.43947412259191,0.397589304964456,1.2781333715647,5.28671380578389,1.26160425437814,0,0,0,0,0,0,0,0.168584690078102,0.241011029883482,0.220587945464788,0,0.71181185733329,0.269662616320329,0.196221465125346,0.38474715694639,0,42.0725321410337,0,0,0,0,0,0,0.122988438543114,0,0.219500570817251,0,0,0,0,0,0,0,0,0.866198686566443,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0,0,0,0,0.197030760201927,0,0,3.04913549066956,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0,0,0,0,0.303127571446259,0,0,0.248107807818777,0,0,0,0,0,0,0,0,0,0,0,0.725156697549733,0,0,0,0,0,0.451199612907412,0.0770153371044148,0,0,0.422206515571503,1.13733384070897,0.340187410553031,4.31831832204279,7.71136263451447,0.541892875087706,0.501689773854853,0,0,1.34324852833307,0,0,0,0,0,0.103041011647722,0.366277859273374,0.247528499761764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14378116354295,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0.438450885253763,0,0.655894752046633,1.62328301570163,0,0,0,0,0.35667105148125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.82781454372753,0.962479855263359,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36408156524854,0,0,0,0,0,0,0,0,0,0.63337622438398,0,0,0,0,0,19.9065336103557,0,0,0,0,0,0,0,0.0927680981618513,0,0.260427761085233,0,0,0.1137934482855,0,0.472775363535873,0,0,0.173624994933292,0,0.723578631752448,0,3.98085335752409,0.295547618953547,0,0.10893846351899,1.39423744278603,0,0,0,1.52587995496613,0.108647371922008,0.31900115973192,0,0,0,0,0,0,0,0,0.189753732724185,0,0.632994193584081,3.26465616318295,0.706765357169704,0,0,0,0,0,0,0,0.943615861729479,0,0.468528891450678,0,0.782658475728359,2.18502341580683,0,0,0.30607276163049,0,6.76455387365216,0.933193722575224,0.664653872707185,0.992975867626496,0.313932918407225,0,0.853828638089378,6.1016856125781,2.77695581336209,0.489961987071888,2.43765778425127,0,0,0.580537987734511,0.584714536689484,0.574808199372465,0,0.0882561266915003,0.225980740780532,0.137041924646751,0,0,0,0,0,1.19885765749278,0.288180834308212,0,0,0,0.869767748958028,0,0.543616824294456,0.523014231561666,0.509991088181609,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,1.08089965062721,1.16495949527454,0,0,0,0.0984274815147488,0,0,0.136203406111576,0.643012593860077,0.687697182986169,0,0,0,0,1.0063040627978,0,0,0.211200673038813,0,1.53532157855556,0,0,0,0,0,0,2.39460383124975,0,0,0.339936274560377,0,0,1.80996138906171,0.79339561045614,1.71086837884329,0,0,0,0,0,0,0,1.27668251554036,0,0,0,0,0.785270481251171,0,0,0,0.573409195690071,1.22021956690538,1.17983165588629,0,0.624902039810533,0,0.285465333544967,0,0.936669811613763,1.1593682288866,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.20022211730523,0,0,13.8803388051516,0.385239660814607,0.214441591374926,1.82696004375648,0.680117776536817,0,1.22368352253234,0.179088841081487,0.308801447160972,0,5.83074181621407,0,0,0,10.0174799102048,1.21543982470953,0,0,0.132864840313363,0,0.655219697692825,0,0,0,0,0,0,0,0,0,1.53473245564382,0.323474434190045,0.157265941855896,0.327628914576042,0,0.212574920101683,0,0.558644917973244,0,0,0,0,0,0.321146125482298,0,0,0,0,0,0,0,0.392590874004102,0.707818340086442,0.366857197043358,0,4.19520305013884,2.7614397042404,1.5913297769302,0,0,0,0.785720083444267,5.89578903036348,0,0,0,0,0,1.09394961803644,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0.271878931907327,0,0.236387681767936,10.4557517778545,0,0.785577949580009,0.280272163313789,0,0,0,0.0714765441766563,0.632054446930906,0,0.347716544605159,0,0,0,0,0,0,0.170426809518315,0,0.22910686854405,0,0.955538938977433,0.111855431797792,0,0,0,0,0,0,1.63757624423474,0,0.118920090777569,0.33883824611688,0,0.150962843566674,0,0.218559560503957,3.76253837089218,0,0,1.57046773691956,0.297046400327086,1.2679671827502,0,0,0,0,0,0,0.0802413666891683,0,0,0.286679166302903,28.0833380703869,0,0,0,0,0,0,23.4669550193247,1.7482491514191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| 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| ||
|short_description=p1@GBX2 | |||
}} | }} |
Latest revision as of 02:19, 16 September 2015
Short description: | p1@GBX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GBX2_5end |
Coexpression cluster: | C4202_Hepatic_Astrocyte_testicular_teratocarcinoma_synovial_basal_prostate |
Association with transcript: | -10bp_to_ENST00000306318_5end |
EntrezGene: | GBX2 |
HGNC: | 4186 |
UniProt: | P52951 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
blood vessel endothelial cell | 5.59e-19 | 18 |
embryonic blood vessel endothelial progenitor cell | 5.59e-19 | 18 |
endothelial cell of artery | 2.11e-18 | 9 |
lining cell | 1.96e-16 | 58 |
barrier cell | 1.96e-16 | 58 |
endothelial cell | 3.61e-15 | 36 |
meso-epithelial cell | 1.00e-14 | 45 |
endothelial cell of vascular tree | 1.70e-13 | 24 |
squamous epithelial cell | 1.21e-12 | 63 |
epithelial cell | 2.64e-12 | 253 |
aortic endothelial cell | 2.73e-11 | 6 |
germ line cell | 1.42e-09 | 7 |
germ cell | 1.42e-09 | 7 |
astrocyte of the cerebellum | 1.58e-09 | 3 |
mesodermal cell | 1.04e-08 | 121 |
embryonic stem cell | 2.54e-08 | 5 |
embryonic cell | 1.84e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 5.59e-19 | 18 |
endothelium | 5.59e-19 | 18 |
cardiovascular system endothelium | 5.59e-19 | 18 |
endothelial tube | 2.11e-18 | 9 |
arterial system endothelium | 2.11e-18 | 9 |
endothelium of artery | 2.11e-18 | 9 |
squamous epithelium | 2.26e-15 | 25 |
simple squamous epithelium | 5.47e-15 | 22 |
posterior neural tube | 1.97e-12 | 15 |
chordal neural plate | 1.97e-12 | 15 |
segmental subdivision of hindbrain | 5.75e-10 | 12 |
hindbrain | 5.75e-10 | 12 |
presumptive hindbrain | 5.75e-10 | 12 |
segmental subdivision of nervous system | 4.11e-09 | 13 |
cerebellum | 6.28e-08 | 6 |
rhombic lip | 6.28e-08 | 6 |
regional part of metencephalon | 1.28e-07 | 9 |
metencephalon | 1.28e-07 | 9 |
future metencephalon | 1.28e-07 | 9 |