FFCP PHASE1:Hg19::chr2:3622840..3622882,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:3622840..3622882,+ to FFCP PHASE1:Hg19::chr2:3622840..3622882,+: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6201 | |EntrezGene=6201 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10440 | |HGNC=10440 | ||
|TSSclassifier=strong | |||
|UniProt=P62081,Q57Z92 | |UniProt=P62081,Q57Z92 | ||
|association_with_transcript=0bp_to_NM_001011,uc002qxw.2_5end | |||
|cluster_id=chr2:3622840..3622882,+ | |||
|coexpression_cluster_id=C1236 | |||
|description=CAGE_peak_1_at_RPS7_5end | |||
|id=chr2:3622840..3622882,+ | |||
|ontology_enrichment_celltype=CL:0000548!4.32e-42!679;CL:0000004!4.32e-42!679;CL:0000255!4.32e-42!679;CL:0000012!5.38e-42!682;CL:0000144!2.12e-28!625;CL:0002321!2.22e-26!248;CL:0000220!2.32e-26!246;CL:0000003!4.98e-24!722;CL:0002371!2.37e-23!591;CL:0000055!1.14e-18!180;CL:0000680!3.28e-16!57;CL:0000056!3.28e-16!57;CL:0000355!3.28e-16!57;CL:0000393!3.57e-16!60;CL:0000211!3.57e-16!60;CL:0000187!1.59e-15!54;CL:0000183!3.31e-15!59;CL:0000066!3.91e-15!254;CL:0000222!8.39e-14!119;CL:0000192!6.58e-12!42;CL:0000514!6.58e-12!42;CL:0000063!4.05e-11!578;CL:0000359!2.08e-08!32;CL:0002076!7.17e-07!43 | |||
|ontology_enrichment_celltype_v019=CL:0000187;2.45e-09;55!CL:0000192;1.54e-08;43!CL:0000393;1.62e-08;61!CL:0000211;1.62e-08;61!CL:0000359;6.03e-08;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,7.07e-27,250;CL:0000680,2.56e-16,58;CL:0000056,2.56e-16,58;CL:0000355,2.56e-16,58;CL:0000393,2.76e-16,61;CL:0000211,2.76e-16,61;CL:0000187,1.25e-15,55;CL:0000066,5.48e-15,253;CL:0000222,3.33e-14,121;CL:0000192,5.19e-12,43;CL:0000514,5.19e-12,43;CL:0000359,2.08e-08,32 | |||
|ontology_enrichment_development_v019=CL:0000355;3.05e-09;58!CL:0000514;1.54e-08;43 | |||
|ontology_enrichment_disease=DOID:14566!3.15e-14!239;DOID:162!1.61e-13!235;DOID:0050687!6.07e-07!143;DOID:2531!9.66e-07!51;DOID:0060083!9.66e-07!51 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:14566,3.15e-14,239;DOID:162,1.61e-13,235;DOID:0050687,6.07e-07,143;DOID:2531,9.66e-07,51;DOID:0060083,9.66e-07,51 | |||
|ontology_enrichment_uberon=UBERON:0000486!7.99e-17!82;UBERON:0000914!8.60e-17!83;UBERON:0002329!8.60e-17!83;UBERON:0003077!8.60e-17!83;UBERON:0003059!8.60e-17!83;UBERON:0007282!8.60e-17!83;UBERON:0009618!8.60e-17!83;UBERON:0007285!8.60e-17!83;UBERON:0003104!1.06e-16!238;UBERON:0009142!1.06e-16!238;UBERON:0004290!1.29e-16!70;UBERON:0002100!2.29e-15!216;UBERON:0005256!2.90e-15!143;UBERON:0000490!3.07e-14!138;UBERON:0001134!6.40e-14!61;UBERON:0002036!6.40e-14!61;UBERON:0003082!6.40e-14!61;UBERON:0002385!1.49e-12!63;UBERON:0001015!1.49e-12!63;UBERON:0000383!1.49e-12!63;UBERON:0002049!2.04e-08!79;UBERON:0007798!2.04e-08!79;UBERON:0001637!6.52e-08!42;UBERON:0003509!6.52e-08!42;UBERON:0004572!6.52e-08!42;UBERON:0003914!1.54e-07!118;UBERON:0001981!1.69e-07!60;UBERON:0007500!1.69e-07!60;UBERON:0004537!1.69e-07!60;UBERON:0006965!1.69e-07!60;UBERON:0000055!1.84e-07!69 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000486,5.91e-17,83;UBERON:0000490,7.67e-17,148;UBERON:0002329,9.76e-17,71;UBERON:0003059,9.76e-17,71;UBERON:0007282,9.76e-17,71;UBERON:0004290,9.76e-17,71;UBERON:0009618,9.76e-17,71;UBERON:0007503,1.49e-16,78;UBERON:0003077,5.48e-16,72;UBERON:0007285,5.48e-16,72;UBERON:0007524,1.18e-15,73;UBERON:0002100,1.95e-15,199;UBERON:0001134,4.84e-14,62;UBERON:0002036,4.84e-14,62;UBERON:0003082,4.84e-14,62;UBERON:0005256,6.30e-14,122;UBERON:0003104,1.66e-13,160;UBERON:0009142,1.66e-13,160;UBERON:0002385,1.12e-12,64;UBERON:0001015,1.12e-12,64;UBERON:0000383,1.12e-12,64;UBERON:0002049,1.14e-08,78;UBERON:0007798,1.14e-08,78;UBERON:0001637,6.52e-08,42;UBERON:0003509,6.52e-08,42;UBERON:0004572,6.52e-08,42;UBERON:0007500,8.91e-08,59;UBERON:0001981,8.91e-08,59;UBERON:0004537,8.91e-08,59;UBERON:0006965,8.91e-08,59;UBERON:0000055,1.03e-07,68;UBERON:0003102,1.73e-07,99;UBERON:0003914,2.01e-07,117 | |||
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| ||
|short_description=p1@RPS7 | |||
}} | }} |
Latest revision as of 00:48, 17 September 2015
Short description: | p1@RPS7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RPS7_5end |
Coexpression cluster: | C1236_acute_Mesenchymal_iPS_Skeletal_Bronchial_chronic_embryonic |
Association with transcript: | 0bp_to_NM_001011, uc002qxw.2_5end |
EntrezGene: | RPS7 |
HGNC: | 10440 |
UniProt: | P62081Q57Z92 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 7.07e-27 | 250 |
muscle precursor cell | 2.56e-16 | 58 |
myoblast | 2.56e-16 | 58 |
multi-potent skeletal muscle stem cell | 2.56e-16 | 58 |
electrically responsive cell | 2.76e-16 | 61 |
electrically active cell | 2.76e-16 | 61 |
muscle cell | 1.25e-15 | 55 |
epithelial cell | 5.48e-15 | 253 |
mesodermal cell | 3.33e-14 | 121 |
smooth muscle cell | 5.19e-12 | 43 |
smooth muscle myoblast | 5.19e-12 | 43 |
vascular associated smooth muscle cell | 2.08e-08 | 32 |
Ontology term | p-value | n |
---|---|---|
multilaminar epithelium | 5.91e-17 | 83 |
unilaminar epithelium | 7.67e-17 | 148 |
somite | 9.76e-17 | 71 |
presomitic mesoderm | 9.76e-17 | 71 |
presumptive segmental plate | 9.76e-17 | 71 |
dermomyotome | 9.76e-17 | 71 |
trunk paraxial mesoderm | 9.76e-17 | 71 |
epithelial vesicle | 1.49e-16 | 78 |
paraxial mesoderm | 5.48e-16 | 72 |
presumptive paraxial mesoderm | 5.48e-16 | 72 |
dense mesenchyme tissue | 1.18e-15 | 73 |
trunk | 1.95e-15 | 199 |
skeletal muscle tissue | 4.84e-14 | 62 |
striated muscle tissue | 4.84e-14 | 62 |
myotome | 4.84e-14 | 62 |
trunk mesenchyme | 6.30e-14 | 122 |
mesenchyme | 1.66e-13 | 160 |
entire embryonic mesenchyme | 1.66e-13 | 160 |
muscle tissue | 1.12e-12 | 64 |
musculature | 1.12e-12 | 64 |
musculature of body | 1.12e-12 | 64 |
vasculature | 1.14e-08 | 78 |
vascular system | 1.14e-08 | 78 |
artery | 6.52e-08 | 42 |
arterial blood vessel | 6.52e-08 | 42 |
arterial system | 6.52e-08 | 42 |
epithelial tube open at both ends | 8.91e-08 | 59 |
blood vessel | 8.91e-08 | 59 |
blood vasculature | 8.91e-08 | 59 |
vascular cord | 8.91e-08 | 59 |
vessel | 1.03e-07 | 68 |
surface structure | 1.73e-07 | 99 |
epithelial tube | 2.01e-07 | 117 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 3.15e-14 | 239 |
cancer | 1.61e-13 | 235 |
cell type cancer | 6.07e-07 | 143 |
hematologic cancer | 9.66e-07 | 51 |
immune system cancer | 9.66e-07 | 51 |