FFCP PHASE1:Hg19::chr3:112280466..112280546,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:112280466..112280546,- to FFCP PHASE1:Hg19::chr3:112280466..112280546,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=64422 | |EntrezGene=64422 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20962 | |HGNC=20962 | ||
|TSSclassifier=strong | |||
|UniProt=F8WDI0,Q9NT62 | |UniProt=F8WDI0,Q9NT62 | ||
|association_with_transcript=0bp_to_ENST00000465980,ENST00000496423,NM_022488,uc003dzc.2,uc003dzd.2,uc010hqe.2_5end | |||
|cluster_id=chr3:112280466..112280546,- | |||
|coexpression_cluster_id=C26 | |||
|description=CAGE_peak_2_at_ATG3_5end | |||
|id=chr3:112280466..112280546,- | |||
|ontology_enrichment_celltype=CL:0000763!1.90e-38!112;CL:0000049!1.90e-38!112;CL:0000766!3.61e-38!76;CL:0000037!9.59e-37!172;CL:0000566!9.59e-37!172;CL:0002032!4.09e-35!165;CL:0000837!4.09e-35!165;CL:0000839!5.05e-35!70;CL:0000557!9.31e-35!71;CL:0000738!1.97e-34!140;CL:0002009!2.71e-33!65;CL:0000988!2.78e-32!182;CL:0002194!3.44e-32!63;CL:0000576!3.44e-32!63;CL:0000040!3.44e-32!63;CL:0000559!3.44e-32!63;CL:0002031!1.66e-29!124;CL:0000860!1.33e-27!45;CL:0002087!4.04e-27!119;CL:0002057!2.54e-26!42;CL:0000134!4.38e-14!358;CL:0002320!1.33e-12!365;CL:0000219!9.43e-09!390;CL:0002393!9.17e-07!9;CL:0002397!9.17e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.24e-19;33!CL:0002057;4.24e-19;33!CL:0000473;9.18e-19;39!CL:0000234;9.18e-19;39!CL:0000576;3.02e-18;48!CL:0000766;1.77e-16;69!CL:0000763;7.69e-11;100!CL:0000738;7.60e-09;136!CL:0002087;1.50e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,4.51e-38,72;CL:0000763,5.18e-38,108;CL:0000049,5.18e-38,108;CL:0000037,4.35e-36,168;CL:0000839,6.09e-35,66;CL:0000557,1.18e-34,67;CL:0002032,1.79e-34,161;CL:0000837,1.79e-34,161;CL:0000738,7.46e-34,136;CL:0002009,3.00e-33,61;CL:0000988,2.45e-32,177;CL:0002194,3.77e-32,59;CL:0000576,3.77e-32,59;CL:0000040,3.77e-32,59;CL:0000559,3.77e-32,59;CL:0000473,1.72e-29,48;CL:0000234,1.72e-29,48;CL:0002031,5.84e-29,120;CL:0002087,1.41e-26,115;CL:0000860,2.54e-26,42;CL:0002057,2.54e-26,42;CL:0000134,1.51e-13,354;CL:0002320,4.31e-12,361;CL:0000219,2.50e-08,386;CL:0002393,9.17e-07,9;CL:0002397,9.17e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002057;4.41e-19;42!CL:0000049;1.58e-10;108 | |||
|ontology_enrichment_disease=DOID:2531!8.21e-07!51;DOID:0060083!8.21e-07!51 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:2531,8.21e-07,51;DOID:0060083,8.21e-07,51 | |||
|ontology_enrichment_uberon=UBERON:0002390!2.08e-37!102;UBERON:0003061!2.08e-37!102;UBERON:0002193!1.52e-32!112;UBERON:0002371!2.00e-31!80;UBERON:0001474!8.82e-30!86;UBERON:0004765!3.16e-27!101;UBERON:0001434!3.16e-27!101;UBERON:0002405!1.36e-19!115;UBERON:0002384!1.59e-11!375;UBERON:0002204!9.36e-08!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.99e-37,98;UBERON:0003061,4.99e-37,98;UBERON:0002193,4.66e-32,108;UBERON:0002371,3.86e-31,76;UBERON:0001474,2.04e-29,82;UBERON:0002405,2.23e-26,93;UBERON:0004765,4.36e-26,90;UBERON:0001434,3.10e-25,100;UBERON:0002384,4.91e-11,371 | |||
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| ||
|short_description=p2@ATG3 | |||
}} | }} |
Latest revision as of 13:48, 19 September 2015
Short description: | p2@ATG3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ATG3_5end |
Coexpression cluster: | C26_Eosinophils_Neutrophils_CD14_CD14CD16_Basophils_Monocytederived_Whole |
Association with transcript: | 0bp_to_ENST00000465980, ENST00000496423, NM_022488, uc003dzc.2, uc003dzd.2, uc010hqe.2_5end |
EntrezGene: | ATG3 |
HGNC: | 20962 |
UniProt: | F8WDI0Q9NT62 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 4.51e-38 | 72 |
myeloid cell | 5.18e-38 | 108 |
common myeloid progenitor | 5.18e-38 | 108 |
hematopoietic stem cell | 4.35e-36 | 168 |
myeloid lineage restricted progenitor cell | 6.09e-35 | 66 |
granulocyte monocyte progenitor cell | 1.18e-34 | 67 |
hematopoietic oligopotent progenitor cell | 1.79e-34 | 161 |
hematopoietic multipotent progenitor cell | 1.79e-34 | 161 |
leukocyte | 7.46e-34 | 136 |
macrophage dendritic cell progenitor | 3.00e-33 | 61 |
hematopoietic cell | 2.45e-32 | 177 |
monopoietic cell | 3.77e-32 | 59 |
monocyte | 3.77e-32 | 59 |
monoblast | 3.77e-32 | 59 |
promonocyte | 3.77e-32 | 59 |
defensive cell | 1.72e-29 | 48 |
phagocyte | 1.72e-29 | 48 |
hematopoietic lineage restricted progenitor cell | 5.84e-29 | 120 |
nongranular leukocyte | 1.41e-26 | 115 |
classical monocyte | 2.54e-26 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.54e-26 | 42 |
mesenchymal cell | 1.51e-13 | 354 |
connective tissue cell | 4.31e-12 | 361 |
motile cell | 2.50e-08 | 386 |
intermediate monocyte | 9.17e-07 | 9 |
CD14-positive, CD16-positive monocyte | 9.17e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 4.99e-37 | 98 |
blood island | 4.99e-37 | 98 |
hemolymphoid system | 4.66e-32 | 108 |
bone marrow | 3.86e-31 | 76 |
bone element | 2.04e-29 | 82 |
immune system | 2.23e-26 | 93 |
skeletal element | 4.36e-26 | 90 |
skeletal system | 3.10e-25 | 100 |
connective tissue | 4.91e-11 | 371 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 8.21e-07 | 51 |
immune system cancer | 8.21e-07 | 51 |